HEADER PROTEIN BINDING 31-MAR-20 6YI2 TITLE UVRD HELICASE RNA POLYMERASE INTERACTIONS ARE GOVERNED BY UVRDS TITLE 2 CARBOXY TERMINAL TUDOR DOMAIN. COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA HELICASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.4.12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: UVRD, ACU57_06555; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS KEYWDS DNA-REPAIR, TUDOR, UVRD, TCR, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.A.KAWALE,B.B.BURMANN REVDAT 3 14-JUN-23 6YI2 1 REMARK REVDAT 2 18-NOV-20 6YI2 1 JRNL REVDAT 1 21-OCT-20 6YI2 0 JRNL AUTH A.A.KAWALE,B.M.BURMANN JRNL TITL UVRD HELICASE-RNA POLYMERASE INTERACTIONS ARE GOVERNED BY JRNL TITL 2 UVRD'S CARBOXY-TERMINAL TUDOR DOMAIN. JRNL REF COMMUN BIOL V. 3 607 2020 JRNL REFN ESSN 2399-3642 JRNL PMID 33097771 JRNL DOI 10.1038/S42003-020-01332-2 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YI2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1292107661. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 70 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 650 UM [U-13C; U-15N] UVRD CTD, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HNCO; 3D HCCH-TOCSY; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.98.12, SPARKY 1.413 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 10 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 662 49.88 -73.57 REMARK 500 1 GLN A 705 -75.64 -158.45 REMARK 500 2 ALA A 648 54.76 -147.97 REMARK 500 2 VAL A 650 -73.59 70.75 REMARK 500 2 VAL A 654 78.14 57.58 REMARK 500 2 MET A 659 -162.35 62.15 REMARK 500 2 MET A 663 46.64 -83.99 REMARK 500 2 ASP A 667 121.90 71.92 REMARK 500 2 HIS A 695 37.37 -85.24 REMARK 500 2 GLN A 705 -68.54 -153.55 REMARK 500 2 ARG A 716 73.99 53.67 REMARK 500 3 ARG A 647 32.52 -90.23 REMARK 500 3 SER A 651 31.93 -87.74 REMARK 500 3 VAL A 654 -32.37 76.06 REMARK 500 3 ASN A 666 -167.53 -124.41 REMARK 500 3 HIS A 695 37.88 -87.18 REMARK 500 3 ARG A 716 72.37 55.63 REMARK 500 4 THR A 649 153.19 178.46 REMARK 500 4 SER A 655 61.54 -100.39 REMARK 500 4 GLN A 657 -50.38 -129.53 REMARK 500 4 ARG A 658 46.77 -107.07 REMARK 500 4 MET A 659 -45.71 73.88 REMARK 500 4 ASN A 666 52.49 -100.90 REMARK 500 4 GLN A 705 -82.90 -135.26 REMARK 500 5 LEU A 646 -71.47 -137.51 REMARK 500 5 SER A 651 -71.53 -160.06 REMARK 500 5 SER A 655 41.63 -93.98 REMARK 500 5 MET A 663 100.12 63.55 REMARK 500 5 ASN A 666 -62.84 -148.88 REMARK 500 5 HIS A 695 31.03 -95.36 REMARK 500 5 GLN A 705 -54.15 -146.64 REMARK 500 6 ALA A 648 77.12 55.84 REMARK 500 6 THR A 649 37.83 -82.87 REMARK 500 6 SER A 651 -55.52 -161.43 REMARK 500 6 VAL A 654 79.38 60.69 REMARK 500 6 ARG A 658 -77.10 -68.45 REMARK 500 6 ASP A 667 126.59 68.16 REMARK 500 6 GLN A 705 -76.04 -113.69 REMARK 500 6 ARG A 716 77.76 58.82 REMARK 500 7 ARG A 652 80.33 60.27 REMARK 500 7 SER A 655 -83.58 61.59 REMARK 500 7 ARG A 658 73.03 57.62 REMARK 500 7 MET A 663 -176.43 66.21 REMARK 500 7 GLU A 665 -76.37 -157.10 REMARK 500 7 ASP A 667 136.98 66.63 REMARK 500 7 SER A 668 37.00 -80.89 REMARK 500 7 GLN A 705 -79.19 -134.59 REMARK 500 8 ALA A 648 -80.71 65.01 REMARK 500 8 VAL A 650 -37.60 -165.63 REMARK 500 8 PRO A 653 91.19 -62.03 REMARK 500 REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 50218 RELATED DB: BMRB DBREF1 6YI2 A 645 720 UNP A0A0P7NW33_ECOLX DBREF2 6YI2 A A0A0P7NW33 645 720 SEQRES 1 A 76 ARG LEU ARG ALA THR VAL SER ARG PRO VAL SER HIS GLN SEQRES 2 A 76 ARG MET GLY THR PRO MET VAL GLU ASN ASP SER GLY TYR SEQRES 3 A 76 LYS LEU GLY GLN ARG VAL ARG HIS ALA LYS PHE GLY GLU SEQRES 4 A 76 GLY THR ILE VAL ASN MET GLU GLY SER GLY GLU HIS SER SEQRES 5 A 76 ARG LEU GLN VAL ALA PHE GLN GLY GLN GLY ILE LYS TRP SEQRES 6 A 76 LEU VAL ALA ALA TYR ALA ARG LEU GLU SER VAL HELIX 1 AA1 SER A 692 HIS A 695 5 4 HELIX 2 AA2 ALA A 712 ARG A 716 1 5 SHEET 1 AA1 5 ILE A 707 VAL A 711 0 SHEET 2 AA1 5 ARG A 697 PHE A 702 -1 N LEU A 698 O LEU A 710 SHEET 3 AA1 5 GLY A 682 GLU A 690 -1 N THR A 685 O ALA A 701 SHEET 4 AA1 5 ARG A 675 HIS A 678 -1 N VAL A 676 O GLY A 684 SHEET 5 AA1 5 GLU A 718 SER A 719 -1 O GLU A 718 N ARG A 677 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1