HEADER LYASE 01-APR-20 6YI9 TITLE CRYSTAL STRUCTURE OF THE RAT CYTOSOLIC PCK1, ACETYLATED ON LYS244 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE CARBOXYKINASE, CYTOSOLIC [GTP]; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPCK-C; COMPND 5 EC: 4.1.1.32; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: NOTE THAT LYS244 IS ACETYLATED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PCK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LYASE EXPDTA X-RAY DIFFRACTION AUTHOR P.LATORRE-MURO,J.BAEZA,R.HURTADO-GUERRERO,T.HICKS,I.DELSO, AUTHOR 2 C.HERNANDEZ-RUIZ,A.VELAZQUEZ-CAMPOY,A.J.LAWTON,J.ANGULO,J.M.DENU, AUTHOR 3 J.A.CARRODEGUAS REVDAT 4 24-JAN-24 6YI9 1 REMARK REVDAT 3 21-JUL-21 6YI9 1 JRNL REVDAT 2 30-DEC-20 6YI9 1 JRNL REVDAT 1 23-DEC-20 6YI9 0 JRNL AUTH P.LATORRE-MURO,J.BAEZA,R.HURTADO-GUERRERO,T.HICKS,I.DELSO, JRNL AUTH 2 C.HERNANDEZ-RUIZ,A.VELAZQUEZ-CAMPOY,A.J.LAWTON,J.ANGULO, JRNL AUTH 3 J.M.DENU,J.A.CARRODEGUAS JRNL TITL SELF-ACETYLATION AT THE ACTIVE SITE OF PHOSPHOENOLPYRUVATE JRNL TITL 2 CARBOXYKINASE (PCK1) CONTROLS ENZYME ACTIVITY. JRNL REF J.BIOL.CHEM. V. 296 00205 2021 JRNL REFN ESSN 1083-351X JRNL PMID 33334880 JRNL DOI 10.1074/JBC.RA120.015103 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.2 REMARK 3 NUMBER OF REFLECTIONS : 52817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2167 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4446 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4872 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 435 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.01000 REMARK 3 B22 (A**2) : 1.87000 REMARK 3 B33 (A**2) : -0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.126 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.902 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5063 ; 0.012 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 4624 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6811 ; 1.575 ; 1.776 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10853 ; 0.548 ; 1.748 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 618 ; 7.332 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;29.529 ;20.650 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 746 ;15.545 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;18.868 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 627 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5616 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 925 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2477 ; 1.896 ; 2.159 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2478 ; 1.896 ; 2.159 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3093 ; 2.855 ; 3.232 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3094 ; 2.855 ; 3.232 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2586 ; 2.802 ; 2.522 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2586 ; 2.802 ; 2.522 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3719 ; 4.330 ; 3.607 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5693 ; 8.737 ;27.262 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5692 ; 8.731 ;27.261 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6YI9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292107681. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55039 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.3 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2QF2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350 MAGNESIUM FORMATE HEPES PH 8 REMARK 280 NAF, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.19200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.83450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.61250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.83450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.19200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.61250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALY A 244 C CYS A 245 N 0.284 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 81 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 253 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 MET A 482 CG - SD - CE ANGL. DEV. = -12.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 6 -97.56 -129.40 REMARK 500 LEU A 9 39.17 -96.47 REMARK 500 ASP A 311 -51.92 -148.37 REMARK 500 PHE A 333 79.36 -112.87 REMARK 500 ASN A 344 68.77 -161.60 REMARK 500 ALA A 467 -115.77 -117.62 REMARK 500 PHE A 530 -124.97 53.11 REMARK 500 ASN A 601 -116.60 47.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 225 0.12 SIDE CHAIN REMARK 500 ARG A 226 0.13 SIDE CHAIN REMARK 500 ARG A 253 0.22 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 713 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 714 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 715 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 716 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 717 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 718 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 719 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 720 DBREF 6YI9 A 1 622 UNP P07379 PCKGC_RAT 1 622 SEQRES 1 A 622 MET PRO PRO GLN LEU HIS ASN GLY LEU ASP PHE SER ALA SEQRES 2 A 622 LYS VAL ILE GLN GLY SER LEU ASP SER LEU PRO GLN GLU SEQRES 3 A 622 VAL ARG LYS PHE VAL GLU GLY ASN ALA GLN LEU CYS GLN SEQRES 4 A 622 PRO GLU TYR ILE HIS ILE CYS ASP GLY SER GLU GLU GLU SEQRES 5 A 622 TYR GLY ARG LEU LEU ALA HIS MET GLN GLU GLU GLY VAL SEQRES 6 A 622 ILE ARG LYS LEU LYS LYS TYR ASP ASN CYS TRP LEU ALA SEQRES 7 A 622 LEU THR ASP PRO ARG ASP VAL ALA ARG ILE GLU SER LYS SEQRES 8 A 622 THR VAL ILE ILE THR GLN GLU GLN ARG ASP THR VAL PRO SEQRES 9 A 622 ILE PRO LYS SER GLY GLN SER GLN LEU GLY ARG TRP MET SEQRES 10 A 622 SER GLU GLU ASP PHE GLU LYS ALA PHE ASN ALA ARG PHE SEQRES 11 A 622 PRO GLY CYS MET LYS GLY ARG THR MET TYR VAL ILE PRO SEQRES 12 A 622 PHE SER MET GLY PRO LEU GLY SER PRO LEU ALA LYS ILE SEQRES 13 A 622 GLY ILE GLU LEU THR ASP SER PRO TYR VAL VAL ALA SER SEQRES 14 A 622 MET ARG ILE MET THR ARG MET GLY THR SER VAL LEU GLU SEQRES 15 A 622 ALA LEU GLY ASP GLY GLU PHE ILE LYS CYS LEU HIS SER SEQRES 16 A 622 VAL GLY CYS PRO LEU PRO LEU LYS LYS PRO LEU VAL ASN SEQRES 17 A 622 ASN TRP ALA CYS ASN PRO GLU LEU THR LEU ILE ALA HIS SEQRES 18 A 622 LEU PRO ASP ARG ARG GLU ILE ILE SER PHE GLY SER GLY SEQRES 19 A 622 TYR GLY GLY ASN SER LEU LEU GLY LYS ALY CYS PHE ALA SEQRES 20 A 622 LEU ARG ILE ALA SER ARG LEU ALA LYS GLU GLU GLY TRP SEQRES 21 A 622 LEU ALA GLU HIS MET LEU ILE LEU GLY ILE THR ASN PRO SEQRES 22 A 622 GLU GLY LYS LYS LYS TYR LEU ALA ALA ALA PHE PRO SER SEQRES 23 A 622 ALA CYS GLY LYS THR ASN LEU ALA MET MET ASN PRO THR SEQRES 24 A 622 LEU PRO GLY TRP LYS VAL GLU CYS VAL GLY ASP ASP ILE SEQRES 25 A 622 ALA TRP MET LYS PHE ASP ALA GLN GLY ASN LEU ARG ALA SEQRES 26 A 622 ILE ASN PRO GLU ASN GLY PHE PHE GLY VAL ALA PRO GLY SEQRES 27 A 622 THR SER VAL LYS THR ASN PRO ASN ALA ILE LYS THR ILE SEQRES 28 A 622 GLN LYS ASN THR ILE PHE THR ASN VAL ALA GLU THR SER SEQRES 29 A 622 ASP GLY GLY VAL TYR TRP GLU GLY ILE ASP GLU PRO LEU SEQRES 30 A 622 ALA PRO GLY VAL THR ILE THR SER TRP LYS ASN LYS GLU SEQRES 31 A 622 TRP ARG PRO GLN ASP GLU GLU PRO CYS ALA HIS PRO ASN SEQRES 32 A 622 SER ARG PHE CYS THR PRO ALA SER GLN CYS PRO ILE ILE SEQRES 33 A 622 ASP PRO ALA TRP GLU SER PRO GLU GLY VAL PRO ILE GLU SEQRES 34 A 622 GLY ILE ILE PHE GLY GLY ARG ARG PRO ALA GLY VAL PRO SEQRES 35 A 622 LEU VAL TYR GLU ALA LEU SER TRP GLN HIS GLY VAL PHE SEQRES 36 A 622 VAL GLY ALA ALA MET ARG SER GLU ALA THR ALA ALA ALA SEQRES 37 A 622 GLU HIS LYS GLY LYS VAL ILE MET HIS ASP PRO PHE ALA SEQRES 38 A 622 MET ARG PRO PHE PHE GLY TYR ASN PHE GLY LYS TYR LEU SEQRES 39 A 622 ALA HIS TRP LEU SER MET ALA HIS ARG PRO ALA ALA LYS SEQRES 40 A 622 LEU PRO LYS ILE PHE HIS VAL ASN TRP PHE ARG LYS ASP SEQRES 41 A 622 LYS ASN GLY LYS PHE LEU TRP PRO GLY PHE GLY GLU ASN SEQRES 42 A 622 SER ARG VAL LEU GLU TRP MET PHE GLY ARG ILE GLU GLY SEQRES 43 A 622 GLU ASP SER ALA LYS LEU THR PRO ILE GLY TYR VAL PRO SEQRES 44 A 622 LYS GLU ASP ALA LEU ASN LEU LYS GLY LEU GLY ASP VAL SEQRES 45 A 622 ASN VAL GLU GLU LEU PHE GLY ILE SER LYS GLU PHE TRP SEQRES 46 A 622 GLU LYS GLU VAL GLU GLU ILE ASP LYS TYR LEU GLU ASP SEQRES 47 A 622 GLN VAL ASN ALA ASP LEU PRO TYR GLU ILE GLU ARG GLU SEQRES 48 A 622 LEU ARG ALA LEU LYS GLN ARG ILE SER GLN MET MODRES 6YI9 ALY A 244 LYS MODIFIED RESIDUE HET ALY A 244 12 HET EDO A 701 4 HET EDO A 702 4 HET EDO A 703 4 HET EDO A 704 4 HET EDO A 705 4 HET EDO A 706 4 HET EDO A 707 4 HET EDO A 708 4 HET EDO A 709 4 HET EDO A 710 4 HET EDO A 711 4 HET EDO A 712 4 HET EDO A 713 4 HET EDO A 714 4 HET EDO A 715 4 HET EDO A 716 4 HET EDO A 717 4 HET EDO A 718 4 HET EDO A 719 4 HET EDO A 720 4 HETNAM ALY N(6)-ACETYLLYSINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 ALY C8 H16 N2 O3 FORMUL 2 EDO 20(C2 H6 O2) FORMUL 22 HOH *435(H2 O) HELIX 1 AA1 PHE A 11 ALA A 13 5 3 HELIX 2 AA2 SER A 19 LEU A 23 5 5 HELIX 3 AA3 PRO A 24 GLN A 39 1 16 HELIX 4 AA4 SER A 49 GLU A 63 1 15 HELIX 5 AA5 ILE A 88 SER A 90 5 3 HELIX 6 AA6 GLU A 98 VAL A 103 1 6 HELIX 7 AA7 SER A 118 ALA A 128 1 11 HELIX 8 AA8 SER A 163 THR A 174 1 12 HELIX 9 AA9 GLY A 177 GLY A 185 1 9 HELIX 10 AB1 ASN A 213 THR A 217 5 5 HELIX 11 AB2 PRO A 223 ARG A 225 5 3 HELIX 12 AB3 TYR A 235 LEU A 240 1 6 HELIX 13 AB4 LEU A 248 GLY A 259 1 12 HELIX 14 AB5 GLY A 289 MET A 295 1 7 HELIX 15 AB6 ASN A 344 ILE A 351 1 8 HELIX 16 AB7 SER A 411 CYS A 413 5 3 HELIX 17 AB8 SER A 449 MET A 460 1 12 HELIX 18 AB9 PRO A 479 MET A 482 5 4 HELIX 19 AC1 ASN A 489 SER A 499 1 11 HELIX 20 AC2 MET A 500 ARG A 503 5 4 HELIX 21 AC3 GLY A 529 GLU A 532 5 4 HELIX 22 AC4 ASN A 533 GLU A 545 1 13 HELIX 23 AC5 ASN A 573 PHE A 578 1 6 HELIX 24 AC6 SER A 581 VAL A 600 1 20 HELIX 25 AC7 ASN A 601 LEU A 604 5 4 HELIX 26 AC8 PRO A 605 GLN A 621 1 17 SHEET 1 AA1 9 VAL A 15 GLN A 17 0 SHEET 2 AA1 9 TYR A 42 ILE A 45 1 O ILE A 43 N ILE A 16 SHEET 3 AA1 9 THR A 138 MET A 146 1 O MET A 139 N TYR A 42 SHEET 4 AA1 9 LYS A 155 THR A 161 -1 O LYS A 155 N MET A 146 SHEET 5 AA1 9 ILE A 190 SER A 195 1 O CYS A 192 N LEU A 160 SHEET 6 AA1 9 GLU A 227 PHE A 231 1 O SER A 230 N LEU A 193 SHEET 7 AA1 9 LEU A 218 LEU A 222 -1 N ALA A 220 O ILE A 229 SHEET 8 AA1 9 THR A 92 ILE A 95 1 N ILE A 95 O HIS A 221 SHEET 9 AA1 9 TRP A 116 MET A 117 1 O MET A 117 N ILE A 94 SHEET 1 AA2 4 VAL A 15 GLN A 17 0 SHEET 2 AA2 4 TYR A 42 ILE A 45 1 O ILE A 43 N ILE A 16 SHEET 3 AA2 4 THR A 138 MET A 146 1 O MET A 139 N TYR A 42 SHEET 4 AA2 4 ARG A 175 MET A 176 -1 O ARG A 175 N SER A 145 SHEET 1 AA3 5 ARG A 67 LEU A 69 0 SHEET 2 AA3 5 CYS A 75 ALA A 78 -1 O LEU A 77 N ARG A 67 SHEET 3 AA3 5 ILE A 356 THR A 358 1 O PHE A 357 N TRP A 76 SHEET 4 AA3 5 ARG A 405 PRO A 409 -1 O ARG A 405 N THR A 358 SHEET 5 AA3 5 GLY A 331 VAL A 335 -1 N PHE A 332 O THR A 408 SHEET 1 AA4 7 LEU A 261 GLU A 263 0 SHEET 2 AA4 7 ALA A 313 PHE A 317 -1 O MET A 315 N LEU A 261 SHEET 3 AA4 7 LEU A 323 ILE A 326 -1 O ILE A 326 N TRP A 314 SHEET 4 AA4 7 VAL A 426 GLY A 434 -1 O ILE A 428 N LEU A 323 SHEET 5 AA4 7 LYS A 277 ALA A 283 1 N ALA A 281 O GLY A 430 SHEET 6 AA4 7 LEU A 266 THR A 271 -1 N ILE A 270 O LYS A 278 SHEET 7 AA4 7 LYS A 304 GLY A 309 -1 O GLU A 306 N GLY A 269 SHEET 1 AA5 6 LEU A 261 GLU A 263 0 SHEET 2 AA5 6 ALA A 313 PHE A 317 -1 O MET A 315 N LEU A 261 SHEET 3 AA5 6 LEU A 323 ILE A 326 -1 O ILE A 326 N TRP A 314 SHEET 4 AA5 6 VAL A 426 GLY A 434 -1 O ILE A 428 N LEU A 323 SHEET 5 AA5 6 LYS A 510 VAL A 514 1 O PHE A 512 N PHE A 433 SHEET 6 AA5 6 VAL A 444 GLU A 446 -1 N TYR A 445 O HIS A 513 SHEET 1 AA6 4 VAL A 368 TYR A 369 0 SHEET 2 AA6 4 ALA A 361 THR A 363 -1 N ALA A 361 O TYR A 369 SHEET 3 AA6 4 ILE A 383 THR A 384 -1 O THR A 384 N GLU A 362 SHEET 4 AA6 4 GLU A 390 TRP A 391 -1 O TRP A 391 N ILE A 383 SHEET 1 AA7 2 ARG A 461 THR A 465 0 SHEET 2 AA7 2 LYS A 473 HIS A 477 -1 O VAL A 474 N ALA A 464 SHEET 1 AA8 2 ALA A 550 THR A 553 0 SHEET 2 AA8 2 GLY A 556 PRO A 559 -1 O VAL A 558 N LYS A 551 LINK C LYS A 243 N ALY A 244 1555 1555 1.34 CISPEP 1 LEU A 200 PRO A 201 0 2.92 SITE 1 AC1 7 ALA A 86 ARG A 87 GLY A 236 GLY A 237 SITE 2 AC1 7 ALY A 244 ASN A 403 ARG A 405 SITE 1 AC2 5 TYR A 445 HIS A 452 VAL A 456 ILE A 555 SITE 2 AC2 5 HOH A 948 SITE 1 AC3 4 GLY A 259 TRP A 260 LYS A 316 PHE A 317 SITE 1 AC4 6 CYS A 288 GLY A 435 VAL A 514 ASN A 515 SITE 2 AC4 6 TRP A 516 PHE A 517 SITE 1 AC5 7 ALA A 439 GLY A 440 ARG A 518 SER A 581 SITE 2 AC5 7 HOH A 819 HOH A 882 HOH A 902 SITE 1 AC6 6 GLU A 41 TYR A 42 SER A 449 GLU A 611 SITE 2 AC6 6 ALA A 614 ARG A 618 SITE 1 AC7 5 PHE A 30 ASN A 34 PHE A 126 LEU A 193 SITE 2 AC7 5 GLU A 227 SITE 1 AC8 4 GLU A 119 ARG A 225 HOH A 821 HOH A 833 SITE 1 AC9 6 SER A 449 TRP A 450 PRO A 509 LYS A 510 SITE 2 AC9 6 ILE A 511 HOH A 860 SITE 1 AD1 5 TRP A 516 PHE A 525 TRP A 527 PRO A 528 SITE 2 AD1 5 GLY A 529 SITE 1 AD2 3 ARG A 543 TYR A 557 HOH A 843 SITE 1 AD3 4 GLU A 538 ALA A 563 LEU A 564 ASN A 565 SITE 1 AD4 4 LYS A 155 GLU A 188 GLU A 258 HOH A1026 SITE 1 AD5 8 GLY A 309 ASP A 310 ASP A 311 ASN A 327 SITE 2 AD5 8 GLY A 331 PHE A 332 ALA A 410 HOH A 806 SITE 1 AD6 3 GLY A 109 GLN A 110 GLY A 302 SITE 1 AD7 5 ASN A 601 LEU A 604 TYR A 606 GLU A 609 SITE 2 AD7 5 HOH A 854 SITE 1 AD8 5 ASP A 593 GLU A 597 LEU A 604 HOH A 810 SITE 2 AD8 5 HOH A 854 SITE 1 AD9 5 GLU A 429 LYS A 507 LEU A 508 HOH A 817 SITE 2 AD9 5 HOH A 832 SITE 1 AE1 7 ASN A 292 VAL A 335 PRO A 337 GLY A 338 SITE 2 AE1 7 THR A 339 HOH A 807 HOH A1106 SITE 1 AE2 2 ASP A 162 PRO A 164 CRYST1 60.384 85.225 119.669 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016561 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011734 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008356 0.00000