HEADER PROTEIN BINDING 02-APR-20 6YJ0 TITLE SOLUTION NMR STRUCTURE OF TITIN N2A REGION IG DOMAIN I83 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TITIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CONNECTIN; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 VARIANT: N2A; SOURCE 6 TISSUE: MUSCLE; SOURCE 7 CELL: MYOCYTE; SOURCE 8 GENE: TTN; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 11 EXPRESSION_SYSTEM_VARIANT: BL21*; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PET151/D-TOPO KEYWDS CALCIUM BINDING ACTIN BINDING MUSCLE I-BAND, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 40 AUTHOR M.PFUHL,M.GAGE REVDAT 3 14-JUN-23 6YJ0 1 REMARK REVDAT 2 28-APR-21 6YJ0 1 JRNL REVDAT 1 14-APR-21 6YJ0 0 JRNL AUTH C.KELLY,N.PACE,M.GAGE,M.PFUHL JRNL TITL SOLUTION NMR STRUCTURE OF TITIN N2A REGION IG DOMAIN I83 AND JRNL TITL 2 ITS INTERACTION WITH METAL IONS. JRNL REF J.MOL.BIOL. V. 433 66977 2021 JRNL REFN ESSN 1089-8638 JRNL PMID 33811919 JRNL DOI 10.1016/J.JMB.2021.166977 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.35 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STANDARD SIMULATED ANNEALING REMARK 4 REMARK 4 6YJ0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292107319. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-95% 15N] DOMAIN I83 REMARK 210 FROM MOUSE TITIN, 90% H2O/10% REMARK 210 D2O; 0.8 MM [U-95% 13C; U-95% REMARK 210 15N] DOMAIN I83 FROM MOUSE TITIN, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2.4, ARIA 2.3.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 40 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 15 87.86 55.69 REMARK 500 1 ILE A 16 148.18 -38.98 REMARK 500 1 SER A 52 49.52 -164.22 REMARK 500 1 ASN A 70 78.92 67.47 REMARK 500 1 GLU A 86 160.54 -45.00 REMARK 500 1 ARG A 88 -9.19 -142.94 REMARK 500 2 ASP A 3 -44.91 175.17 REMARK 500 2 ARG A 15 87.65 57.02 REMARK 500 2 ILE A 16 148.24 -39.20 REMARK 500 2 GLN A 25 -156.16 -84.51 REMARK 500 2 SER A 52 47.92 -164.13 REMARK 500 2 ASN A 70 79.87 63.76 REMARK 500 2 GLU A 86 170.48 -46.15 REMARK 500 2 ARG A 88 -15.10 -143.43 REMARK 500 2 GLU A 90 -177.43 -61.77 REMARK 500 3 ILE A 2 137.06 56.46 REMARK 500 3 ARG A 15 87.29 57.02 REMARK 500 3 ILE A 16 148.37 -39.34 REMARK 500 3 GLN A 25 -156.32 -83.91 REMARK 500 3 SER A 52 44.33 -166.12 REMARK 500 3 ASN A 70 79.29 63.82 REMARK 500 3 GLU A 86 166.27 -45.07 REMARK 500 3 ARG A 88 -9.36 -142.45 REMARK 500 4 ASP A 3 -178.32 -51.32 REMARK 500 4 ARG A 15 88.60 55.42 REMARK 500 4 ILE A 16 148.00 -38.44 REMARK 500 4 SER A 52 47.76 -161.39 REMARK 500 4 LYS A 54 -57.56 -121.40 REMARK 500 4 ASN A 70 79.00 67.66 REMARK 500 4 GLU A 86 164.58 -44.77 REMARK 500 4 ARG A 88 -5.76 -143.09 REMARK 500 5 ARG A 15 87.13 57.05 REMARK 500 5 ILE A 16 148.45 -39.29 REMARK 500 5 GLN A 25 -138.36 -82.60 REMARK 500 5 SER A 52 61.08 -166.80 REMARK 500 5 GLN A 53 25.69 49.85 REMARK 500 5 LYS A 54 -57.92 -130.49 REMARK 500 5 GLU A 86 162.61 -45.09 REMARK 500 5 ARG A 88 -4.46 -142.53 REMARK 500 6 ASP A 3 163.86 -45.87 REMARK 500 6 ARG A 15 87.42 56.24 REMARK 500 6 ILE A 16 147.73 -39.29 REMARK 500 6 SER A 52 44.79 -164.46 REMARK 500 6 ASN A 70 79.53 62.95 REMARK 500 6 GLU A 86 158.50 -44.66 REMARK 500 6 ARG A 88 -6.38 -142.01 REMARK 500 7 ASP A 3 -44.36 -178.10 REMARK 500 7 ARG A 15 87.29 56.50 REMARK 500 7 ILE A 16 148.51 -39.08 REMARK 500 7 SER A 52 44.88 -164.07 REMARK 500 REMARK 500 THIS ENTRY HAS 299 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 21 ARG A 15 0.29 SIDE CHAIN REMARK 500 21 ARG A 58 0.29 SIDE CHAIN REMARK 500 21 ARG A 62 0.30 SIDE CHAIN REMARK 500 21 ARG A 84 0.27 SIDE CHAIN REMARK 500 21 ARG A 88 0.30 SIDE CHAIN REMARK 500 21 ARG A 92 0.22 SIDE CHAIN REMARK 500 22 ARG A 15 0.30 SIDE CHAIN REMARK 500 22 ARG A 58 0.30 SIDE CHAIN REMARK 500 22 ARG A 62 0.31 SIDE CHAIN REMARK 500 22 ARG A 84 0.31 SIDE CHAIN REMARK 500 22 ARG A 88 0.30 SIDE CHAIN REMARK 500 22 ARG A 92 0.09 SIDE CHAIN REMARK 500 22 ARG A 102 0.09 SIDE CHAIN REMARK 500 23 ARG A 15 0.28 SIDE CHAIN REMARK 500 23 ARG A 58 0.23 SIDE CHAIN REMARK 500 23 ARG A 62 0.29 SIDE CHAIN REMARK 500 23 ARG A 84 0.31 SIDE CHAIN REMARK 500 23 ARG A 88 0.30 SIDE CHAIN REMARK 500 23 ARG A 92 0.10 SIDE CHAIN REMARK 500 23 ARG A 102 0.16 SIDE CHAIN REMARK 500 24 ARG A 15 0.28 SIDE CHAIN REMARK 500 24 ARG A 58 0.23 SIDE CHAIN REMARK 500 24 ARG A 62 0.20 SIDE CHAIN REMARK 500 24 ARG A 84 0.23 SIDE CHAIN REMARK 500 24 ARG A 92 0.30 SIDE CHAIN REMARK 500 24 ARG A 102 0.28 SIDE CHAIN REMARK 500 25 ARG A 15 0.30 SIDE CHAIN REMARK 500 25 ARG A 58 0.22 SIDE CHAIN REMARK 500 25 ARG A 62 0.30 SIDE CHAIN REMARK 500 25 ARG A 84 0.11 SIDE CHAIN REMARK 500 25 ARG A 92 0.13 SIDE CHAIN REMARK 500 25 ARG A 102 0.29 SIDE CHAIN REMARK 500 26 ARG A 15 0.09 SIDE CHAIN REMARK 500 26 ARG A 58 0.13 SIDE CHAIN REMARK 500 26 ARG A 62 0.31 SIDE CHAIN REMARK 500 26 ARG A 84 0.30 SIDE CHAIN REMARK 500 26 ARG A 88 0.31 SIDE CHAIN REMARK 500 26 ARG A 92 0.31 SIDE CHAIN REMARK 500 26 ARG A 102 0.25 SIDE CHAIN REMARK 500 27 ARG A 58 0.29 SIDE CHAIN REMARK 500 27 ARG A 62 0.30 SIDE CHAIN REMARK 500 27 ARG A 84 0.17 SIDE CHAIN REMARK 500 27 ARG A 88 0.28 SIDE CHAIN REMARK 500 27 ARG A 102 0.14 SIDE CHAIN REMARK 500 28 ARG A 58 0.30 SIDE CHAIN REMARK 500 28 ARG A 62 0.25 SIDE CHAIN REMARK 500 28 ARG A 84 0.10 SIDE CHAIN REMARK 500 28 ARG A 102 0.30 SIDE CHAIN REMARK 500 29 ARG A 15 0.14 SIDE CHAIN REMARK 500 29 ARG A 58 0.30 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 116 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 50015 RELATED DB: BMRB DBREF 6YJ0 A 7 97 UNP A2ASS6 TITIN_MOUSE 9719 9809 SEQADV 6YJ0 GLY A 1 UNP A2ASS6 EXPRESSION TAG SEQADV 6YJ0 ILE A 2 UNP A2ASS6 EXPRESSION TAG SEQADV 6YJ0 ASP A 3 UNP A2ASS6 EXPRESSION TAG SEQADV 6YJ0 PRO A 4 UNP A2ASS6 EXPRESSION TAG SEQADV 6YJ0 PHE A 5 UNP A2ASS6 EXPRESSION TAG SEQADV 6YJ0 THR A 6 UNP A2ASS6 EXPRESSION TAG SEQADV 6YJ0 LYS A 98 UNP A2ASS6 EXPRESSION TAG SEQADV 6YJ0 GLY A 99 UNP A2ASS6 EXPRESSION TAG SEQADV 6YJ0 GLU A 100 UNP A2ASS6 EXPRESSION TAG SEQADV 6YJ0 LEU A 101 UNP A2ASS6 EXPRESSION TAG SEQADV 6YJ0 ARG A 102 UNP A2ASS6 EXPRESSION TAG SEQADV 6YJ0 SER A 103 UNP A2ASS6 EXPRESSION TAG SEQADV 6YJ0 GLY A 104 UNP A2ASS6 EXPRESSION TAG SEQADV 6YJ0 CYS A 105 UNP A2ASS6 EXPRESSION TAG SEQRES 1 A 105 GLY ILE ASP PRO PHE THR ALA GLU PRO ILE GLN PHE THR SEQRES 2 A 105 LYS ARG ILE GLN ASN ILE VAL VAL SER GLU HIS GLN SER SEQRES 3 A 105 ALA THR PHE GLU CYS GLU VAL SER PHE ASP ASP ALA ILE SEQRES 4 A 105 VAL THR TRP TYR LYS GLY PRO THR GLU LEU THR GLU SER SEQRES 5 A 105 GLN LYS TYR ASN PHE ARG ASN ASP GLY ARG CYS HIS TYR SEQRES 6 A 105 MET THR ILE HIS ASN VAL THR PRO ASP ASP GLU GLY VAL SEQRES 7 A 105 TYR SER VAL ILE ALA ARG LEU GLU PRO ARG GLY GLU ALA SEQRES 8 A 105 ARG SER THR ALA GLU LEU LYS GLY GLU LEU ARG SER GLY SEQRES 9 A 105 CYS HELIX 1 AA1 THR A 72 GLU A 76 5 5 SHEET 1 AA1 5 ILE A 19 SER A 22 0 SHEET 2 AA1 5 ALA A 91 GLU A 100 1 O LYS A 98 N VAL A 21 SHEET 3 AA1 5 GLY A 77 ARG A 84 -1 N GLY A 77 O LEU A 97 SHEET 4 AA1 5 ILE A 39 LYS A 44 -1 N ILE A 39 O ARG A 84 SHEET 5 AA1 5 THR A 47 GLU A 48 -1 O THR A 47 N LYS A 44 SHEET 1 AA2 3 SER A 26 GLU A 32 0 SHEET 2 AA2 3 CYS A 63 HIS A 69 -1 O ILE A 68 N ALA A 27 SHEET 3 AA2 3 TYR A 55 ASP A 60 -1 N ASP A 60 O CYS A 63 CISPEP 1 GLU A 86 PRO A 87 21 -4.87 CISPEP 2 GLU A 86 PRO A 87 22 -5.15 CISPEP 3 GLU A 86 PRO A 87 23 -4.98 CISPEP 4 GLU A 86 PRO A 87 24 -4.67 CISPEP 5 GLU A 86 PRO A 87 25 -4.91 CISPEP 6 GLU A 86 PRO A 87 26 -4.74 CISPEP 7 GLU A 86 PRO A 87 27 -5.10 CISPEP 8 GLU A 86 PRO A 87 28 -5.07 CISPEP 9 GLU A 86 PRO A 87 29 -4.91 CISPEP 10 GLU A 86 PRO A 87 30 -4.83 CISPEP 11 GLU A 86 PRO A 87 31 -4.95 CISPEP 12 GLU A 86 PRO A 87 32 -5.03 CISPEP 13 GLU A 86 PRO A 87 33 -4.83 CISPEP 14 GLU A 86 PRO A 87 34 -5.01 CISPEP 15 GLU A 86 PRO A 87 35 -4.38 CISPEP 16 GLU A 86 PRO A 87 36 -5.06 CISPEP 17 GLU A 86 PRO A 87 37 -4.78 CISPEP 18 GLU A 86 PRO A 87 38 -4.81 CISPEP 19 GLU A 86 PRO A 87 39 -4.94 CISPEP 20 GLU A 86 PRO A 87 40 -5.14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1