HEADER HYDROLASE 03-APR-20 6YJM TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF ADAMTS-5 IN COMPLEX WITH TITLE 2 THE INHIBITOR GLPG1972 COMPND MOL_ID: 1; COMPND 2 MOLECULE: A DISINTEGRIN AND METALLOPROTEINASE WITH THROMBOSPONDIN COMPND 3 MOTIFS 5; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: ADAMTS-5,A DISINTEGRIN AND METALLOPROTEINASE WITH COMPND 6 THROMBOSPONDIN MOTIFS 11,ADAMTS-11,ADMP-2,AGGRECANASE-2; COMPND 7 EC: 3.4.24.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: THE THREE LAST AMINO ACIDS OF THE SEQUENCE (VPR) ARE COMPND 11 PART OF AN ENGINEERED THROMBIN ENZYME CLEAVAGE SITE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADAMTS5, ADAMTS11, ADMP2; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ZINC METALLOPROTEINASE, AGGRECANASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GOEPFERT,P.LEONARD,N.TRIBALLEAU,D.FLEURY,P.MOLLAT,M.LAMERS REVDAT 3 24-JAN-24 6YJM 1 REMARK REVDAT 2 03-NOV-21 6YJM 1 JRNL REVDAT 1 14-APR-21 6YJM 0 JRNL AUTH F.BREBION,R.GOSMINI,P.DEPREZ,M.VARIN,C.PEIXOTO,L.ALVEY, JRNL AUTH 2 H.JARY,N.BIENVENU,N.TRIBALLEAU,R.BLANQUE,C.COTTEREAUX, JRNL AUTH 3 T.CHRISTOPHE,N.VANDERVOORT,P.MOLLAT,R.TOUITOU,P.LEONARD, JRNL AUTH 4 F.DE CEUNINCK,I.BOTEZ,A.MONJARDET,E.VAN DER AAR,D.AMANTINI JRNL TITL DISCOVERY OF GLPG1972/S201086, A POTENT, SELECTIVE, AND JRNL TITL 2 ORALLY BIOAVAILABLE ADAMTS-5 INHIBITOR FOR THE TREATMENT OF JRNL TITL 3 OSTEOARTHRITIS. JRNL REF J.MED.CHEM. V. 64 2937 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 33719441 JRNL DOI 10.1021/ACS.JMEDCHEM.0C02008 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 86.2 REMARK 3 NUMBER OF REFLECTIONS : 13962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 737 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 558 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 48.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3275 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.253 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.305 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.005 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.903 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.862 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6YJM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292107416. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15333 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 18.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.2 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3LJT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.0, 300% V/V JEFFAMINE REMARK 280 ED-2001 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.12000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 262 REMARK 465 ILE A 263 REMARK 465 ASP A 323 REMARK 465 LYS A 324 REMARK 465 ASP A 325 REMARK 465 ARG A 484 REMARK 465 SER B 262 REMARK 465 ILE B 263 REMARK 465 SER B 264 REMARK 465 GLY B 322 REMARK 465 ASP B 323 REMARK 465 LYS B 324 REMARK 465 ASP B 325 REMARK 465 LEU B 481 REMARK 465 VAL B 482 REMARK 465 PRO B 483 REMARK 465 ARG B 484 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 GLN A 347 CG CD OE1 NE2 REMARK 470 HIS A 373 N CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 374 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 462 CD OE1 OE2 REMARK 470 ARG B 285 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 308 CG CD OE1 OE2 REMARK 470 HIS B 374 CB CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 424 CD CE NZ REMARK 470 LYS B 454 CG CD CE NZ REMARK 470 LYS B 478 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 402 -44.87 -136.68 REMARK 500 LYS A 450 76.55 -160.06 REMARK 500 LYS A 478 68.35 -155.11 REMARK 500 LEU B 402 -43.78 -137.48 REMARK 500 LYS B 450 76.28 -160.09 REMARK 500 LYS B 478 72.72 -157.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 270 OE2 REMARK 620 2 ASP A 353 OD1 74.4 REMARK 620 3 ASP A 353 OD2 121.8 47.9 REMARK 620 4 ASP A 360 OD1 84.2 84.2 95.8 REMARK 620 5 ASP A 360 OD2 78.3 130.2 142.5 52.0 REMARK 620 6 CYS A 471 O 162.3 117.1 72.4 83.8 84.1 REMARK 620 7 ASP A 474 OD1 105.1 83.5 66.2 162.0 144.3 90.1 REMARK 620 8 HOH A 608 O 91.0 148.2 132.5 123.0 71.3 84.7 73.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 270 OE1 REMARK 620 2 GLU A 270 OE2 52.5 REMARK 620 3 ASP A 353 O 154.2 153.3 REMARK 620 4 ASP A 353 OD1 121.8 73.6 81.3 REMARK 620 5 ASP A 474 OD2 87.5 102.9 83.3 84.7 REMARK 620 6 HOH A 610 O 92.9 92.2 88.2 110.9 161.0 REMARK 620 7 HOH A 612 O 70.0 122.5 84.2 154.2 72.5 89.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 369 OD1 REMARK 620 2 LEU A 370 O 90.1 REMARK 620 3 CYS A 376 O 92.5 89.8 REMARK 620 4 THR A 378 O 167.6 82.9 97.6 REMARK 620 5 GLU A 398 OE1 101.1 105.2 159.6 71.2 REMARK 620 6 HOH A 639 O 93.9 167.3 78.0 95.1 85.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 410 NE2 REMARK 620 2 HIS A 414 NE2 97.0 REMARK 620 3 HIS A 420 NE2 111.3 99.0 REMARK 620 4 OU5 A 505 N5 126.5 119.8 100.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 270 OE1 REMARK 620 2 ASP B 353 OD1 72.3 REMARK 620 3 ASP B 353 OD2 117.2 45.5 REMARK 620 4 ASP B 360 OD1 91.3 79.9 86.1 REMARK 620 5 ASP B 360 OD2 83.4 126.4 136.0 53.2 REMARK 620 6 CYS B 471 O 167.3 116.0 72.7 81.3 84.0 REMARK 620 7 ASP B 474 OD1 105.7 88.5 70.5 155.5 144.7 84.6 REMARK 620 8 HOH B 605 O 91.3 146.1 134.0 131.1 78.7 86.0 67.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 270 OE1 REMARK 620 2 GLU B 270 OE2 52.3 REMARK 620 3 ASP B 353 O 149.4 156.7 REMARK 620 4 ASP B 353 OD1 76.0 127.2 76.1 REMARK 620 5 ASP B 474 OD2 105.3 93.3 87.1 90.5 REMARK 620 6 HOH B 607 O 90.5 88.1 84.2 103.6 161.1 REMARK 620 7 HOH B 614 O 131.9 79.8 78.5 148.5 70.0 91.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 369 OD1 REMARK 620 2 LEU B 370 O 84.9 REMARK 620 3 CYS B 376 O 90.7 87.1 REMARK 620 4 THR B 378 O 163.0 84.0 101.6 REMARK 620 5 GLU B 398 OE1 92.6 98.2 174.1 76.3 REMARK 620 6 HOH B 630 O 84.5 169.1 90.4 106.9 85.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 410 NE2 REMARK 620 2 HIS B 414 NE2 97.5 REMARK 620 3 HIS B 420 NE2 115.1 105.7 REMARK 620 4 OU5 B 505 N5 123.4 115.6 99.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OU5 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OU5 B 505 DBREF 6YJM A 264 481 UNP Q9UNA0 ATS5_HUMAN 264 481 DBREF 6YJM B 264 481 UNP Q9UNA0 ATS5_HUMAN 264 481 SEQADV 6YJM SER A 262 UNP Q9UNA0 EXPRESSION TAG SEQADV 6YJM ILE A 263 UNP Q9UNA0 EXPRESSION TAG SEQADV 6YJM LYS A 282 UNP Q9UNA0 LEU 282 ENGINEERED MUTATION SEQADV 6YJM VAL A 482 UNP Q9UNA0 EXPRESSION TAG SEQADV 6YJM PRO A 483 UNP Q9UNA0 EXPRESSION TAG SEQADV 6YJM ARG A 484 UNP Q9UNA0 EXPRESSION TAG SEQADV 6YJM SER B 262 UNP Q9UNA0 EXPRESSION TAG SEQADV 6YJM ILE B 263 UNP Q9UNA0 EXPRESSION TAG SEQADV 6YJM LYS B 282 UNP Q9UNA0 LEU 282 ENGINEERED MUTATION SEQADV 6YJM VAL B 482 UNP Q9UNA0 EXPRESSION TAG SEQADV 6YJM PRO B 483 UNP Q9UNA0 EXPRESSION TAG SEQADV 6YJM ARG B 484 UNP Q9UNA0 EXPRESSION TAG SEQRES 1 A 223 SER ILE SER ARG ALA ARG GLN VAL GLU LEU LEU LEU VAL SEQRES 2 A 223 ALA ASP ALA SER MET ALA ARG LYS TYR GLY ARG GLY LEU SEQRES 3 A 223 GLN HIS TYR LEU LEU THR LEU ALA SER ILE ALA ASN ARG SEQRES 4 A 223 LEU TYR SER HIS ALA SER ILE GLU ASN HIS ILE ARG LEU SEQRES 5 A 223 ALA VAL VAL LYS VAL VAL VAL LEU GLY ASP LYS ASP LYS SEQRES 6 A 223 SER LEU GLU VAL SER LYS ASN ALA ALA THR THR LEU LYS SEQRES 7 A 223 ASN PHE CYS LYS TRP GLN HIS GLN HIS ASN GLN LEU GLY SEQRES 8 A 223 ASP ASP HIS GLU GLU HIS TYR ASP ALA ALA ILE LEU PHE SEQRES 9 A 223 THR ARG GLU ASP LEU CYS GLY HIS HIS SER CYS ASP THR SEQRES 10 A 223 LEU GLY MET ALA ASP VAL GLY THR ILE CYS SER PRO GLU SEQRES 11 A 223 ARG SER CYS ALA VAL ILE GLU ASP ASP GLY LEU HIS ALA SEQRES 12 A 223 ALA PHE THR VAL ALA HIS GLU ILE GLY HIS LEU LEU GLY SEQRES 13 A 223 LEU SER HIS ASP ASP SER LYS PHE CYS GLU GLU THR PHE SEQRES 14 A 223 GLY SER THR GLU ASP LYS ARG LEU MET SER SER ILE LEU SEQRES 15 A 223 THR SER ILE ASP ALA SER LYS PRO TRP SER LYS CYS THR SEQRES 16 A 223 SER ALA THR ILE THR GLU PHE LEU ASP ASP GLY HIS GLY SEQRES 17 A 223 ASN CYS LEU LEU ASP LEU PRO ARG LYS GLN ILE LEU VAL SEQRES 18 A 223 PRO ARG SEQRES 1 B 223 SER ILE SER ARG ALA ARG GLN VAL GLU LEU LEU LEU VAL SEQRES 2 B 223 ALA ASP ALA SER MET ALA ARG LYS TYR GLY ARG GLY LEU SEQRES 3 B 223 GLN HIS TYR LEU LEU THR LEU ALA SER ILE ALA ASN ARG SEQRES 4 B 223 LEU TYR SER HIS ALA SER ILE GLU ASN HIS ILE ARG LEU SEQRES 5 B 223 ALA VAL VAL LYS VAL VAL VAL LEU GLY ASP LYS ASP LYS SEQRES 6 B 223 SER LEU GLU VAL SER LYS ASN ALA ALA THR THR LEU LYS SEQRES 7 B 223 ASN PHE CYS LYS TRP GLN HIS GLN HIS ASN GLN LEU GLY SEQRES 8 B 223 ASP ASP HIS GLU GLU HIS TYR ASP ALA ALA ILE LEU PHE SEQRES 9 B 223 THR ARG GLU ASP LEU CYS GLY HIS HIS SER CYS ASP THR SEQRES 10 B 223 LEU GLY MET ALA ASP VAL GLY THR ILE CYS SER PRO GLU SEQRES 11 B 223 ARG SER CYS ALA VAL ILE GLU ASP ASP GLY LEU HIS ALA SEQRES 12 B 223 ALA PHE THR VAL ALA HIS GLU ILE GLY HIS LEU LEU GLY SEQRES 13 B 223 LEU SER HIS ASP ASP SER LYS PHE CYS GLU GLU THR PHE SEQRES 14 B 223 GLY SER THR GLU ASP LYS ARG LEU MET SER SER ILE LEU SEQRES 15 B 223 THR SER ILE ASP ALA SER LYS PRO TRP SER LYS CYS THR SEQRES 16 B 223 SER ALA THR ILE THR GLU PHE LEU ASP ASP GLY HIS GLY SEQRES 17 B 223 ASN CYS LEU LEU ASP LEU PRO ARG LYS GLN ILE LEU VAL SEQRES 18 B 223 PRO ARG HET ZN A 501 1 HET CA A 502 1 HET CA A 503 1 HET CA A 504 1 HET OU5 A 505 29 HET ZN B 501 1 HET CA B 502 1 HET CA B 503 1 HET CA B 504 1 HET OU5 B 505 29 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM OU5 (5~{S})-5-[3-[(3~{S})-4-[3,5-BIS(FLUORANYL)PHENYL]-3- HETNAM 2 OU5 METHYL-PIPERAZIN-1-YL]-3-OXIDANYLIDENE-PROPYL]-5- HETNAM 3 OU5 CYCLOPROPYL-IMIDAZOLIDINE-2,4-DIONE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 CA 6(CA 2+) FORMUL 7 OU5 2(C20 H24 F2 N4 O3) FORMUL 13 HOH *94(H2 O) HELIX 1 AA1 ASP A 276 GLY A 284 1 9 HELIX 2 AA2 GLY A 286 SER A 303 1 18 HELIX 3 AA3 HIS A 304 GLU A 308 5 5 HELIX 4 AA4 ASN A 333 ASN A 349 1 17 HELIX 5 AA5 HIS A 403 LEU A 416 1 14 HELIX 6 AA6 SER A 423 GLY A 431 1 9 HELIX 7 AA7 SER A 453 ASP A 466 1 14 HELIX 8 AA8 GLY A 469 LEU A 473 5 5 HELIX 9 AA9 ASP B 276 GLY B 284 1 9 HELIX 10 AB1 GLY B 286 SER B 303 1 18 HELIX 11 AB2 HIS B 304 GLU B 308 5 5 HELIX 12 AB3 ASN B 333 HIS B 348 1 16 HELIX 13 AB4 SER B 389 ARG B 392 5 4 HELIX 14 AB5 HIS B 403 LEU B 416 1 14 HELIX 15 AB6 SER B 423 GLY B 431 1 9 HELIX 16 AB7 SER B 453 ASP B 466 1 14 HELIX 17 AB8 GLY B 469 LEU B 473 5 5 SHEET 1 AA1 5 ILE A 311 VAL A 320 0 SHEET 2 AA1 5 ARG A 267 ALA A 275 1 N VAL A 269 O ARG A 312 SHEET 3 AA1 5 ALA A 361 THR A 366 1 O ILE A 363 N LEU A 272 SHEET 4 AA1 5 CYS A 394 GLU A 398 1 O ILE A 397 N LEU A 364 SHEET 5 AA1 5 GLY A 380 ALA A 382 -1 N MET A 381 O VAL A 396 SHEET 1 AA2 5 ILE B 311 VAL B 320 0 SHEET 2 AA2 5 ARG B 267 ALA B 275 1 N LEU B 271 O ALA B 314 SHEET 3 AA2 5 ALA B 361 THR B 366 1 O ILE B 363 N LEU B 272 SHEET 4 AA2 5 CYS B 394 GLU B 398 1 O ILE B 397 N LEU B 364 SHEET 5 AA2 5 GLY B 380 ALA B 382 -1 N MET B 381 O VAL B 396 SSBOND 1 CYS A 342 CYS A 394 1555 1555 2.03 SSBOND 2 CYS A 371 CYS A 376 1555 1555 2.03 SSBOND 3 CYS A 388 CYS A 471 1555 1555 2.03 SSBOND 4 CYS A 426 CYS A 455 1555 1555 2.03 SSBOND 5 CYS B 342 CYS B 394 1555 1555 2.03 SSBOND 6 CYS B 371 CYS B 376 1555 1555 2.03 SSBOND 7 CYS B 388 CYS B 471 1555 1555 2.03 SSBOND 8 CYS B 426 CYS B 455 1555 1555 2.03 LINK OE2 GLU A 270 CA CA A 502 1555 1555 2.44 LINK OE1 GLU A 270 CA CA A 503 1555 1555 2.46 LINK OE2 GLU A 270 CA CA A 503 1555 1555 2.51 LINK OD1 ASP A 353 CA CA A 502 1555 1555 2.59 LINK OD2 ASP A 353 CA CA A 502 1555 1555 2.79 LINK O ASP A 353 CA CA A 503 1555 1555 2.37 LINK OD1 ASP A 353 CA CA A 503 1555 1555 2.58 LINK OD1 ASP A 360 CA CA A 502 1555 1555 2.46 LINK OD2 ASP A 360 CA CA A 502 1555 1555 2.55 LINK OD1 ASP A 369 CA CA A 504 1555 1555 2.32 LINK O LEU A 370 CA CA A 504 1555 1555 2.37 LINK O CYS A 376 CA CA A 504 1555 1555 2.36 LINK O THR A 378 CA CA A 504 1555 1555 2.42 LINK OE1 GLU A 398 CA CA A 504 1555 1555 2.47 LINK NE2 HIS A 410 ZN ZN A 501 1555 1555 2.11 LINK NE2 HIS A 414 ZN ZN A 501 1555 1555 2.17 LINK NE2 HIS A 420 ZN ZN A 501 1555 1555 2.11 LINK O CYS A 471 CA CA A 502 1555 1555 2.38 LINK OD1 ASP A 474 CA CA A 502 1555 1555 2.35 LINK OD2 ASP A 474 CA CA A 503 1555 1555 2.39 LINK ZN ZN A 501 N5 OU5 A 505 1555 1555 2.06 LINK CA CA A 502 O HOH A 608 1555 1555 2.52 LINK CA CA A 503 O HOH A 610 1555 1555 2.43 LINK CA CA A 503 O HOH A 612 1555 1555 2.42 LINK CA CA A 504 O HOH A 639 1555 1555 2.42 LINK OE1 GLU B 270 CA CA B 502 1555 1555 2.43 LINK OE1 GLU B 270 CA CA B 503 1555 1555 2.49 LINK OE2 GLU B 270 CA CA B 503 1555 1555 2.49 LINK OD1 ASP B 353 CA CA B 502 1555 1555 2.89 LINK OD2 ASP B 353 CA CA B 502 1555 1555 2.78 LINK O ASP B 353 CA CA B 503 1555 1555 2.47 LINK OD1 ASP B 353 CA CA B 503 1555 1555 2.64 LINK OD1 ASP B 360 CA CA B 502 1555 1555 2.46 LINK OD2 ASP B 360 CA CA B 502 1555 1555 2.44 LINK OD1 ASP B 369 CA CA B 504 1555 1555 2.41 LINK O LEU B 370 CA CA B 504 1555 1555 2.44 LINK O CYS B 376 CA CA B 504 1555 1555 2.37 LINK O THR B 378 CA CA B 504 1555 1555 2.33 LINK OE1 GLU B 398 CA CA B 504 1555 1555 2.50 LINK NE2 HIS B 410 ZN ZN B 501 1555 1555 2.12 LINK NE2 HIS B 414 ZN ZN B 501 1555 1555 2.14 LINK NE2 HIS B 420 ZN ZN B 501 1555 1555 2.07 LINK O CYS B 471 CA CA B 502 1555 1555 2.43 LINK OD1 ASP B 474 CA CA B 502 1555 1555 2.47 LINK OD2 ASP B 474 CA CA B 503 1555 1555 2.37 LINK ZN ZN B 501 N5 OU5 B 505 1555 1555 2.26 LINK CA CA B 502 O HOH B 605 1555 1555 2.74 LINK CA CA B 503 O HOH B 607 1555 1555 2.48 LINK CA CA B 503 O HOH B 614 1555 1555 2.48 LINK CA CA B 504 O HOH B 630 1555 1555 2.61 SITE 1 AC1 4 HIS A 410 HIS A 414 HIS A 420 OU5 A 505 SITE 1 AC2 7 GLU A 270 ASP A 353 ASP A 360 CYS A 471 SITE 2 AC2 7 ASP A 474 CA A 503 HOH A 608 SITE 1 AC3 6 GLU A 270 ASP A 353 ASP A 474 CA A 502 SITE 2 AC3 6 HOH A 610 HOH A 612 SITE 1 AC4 6 ASP A 369 LEU A 370 CYS A 376 THR A 378 SITE 2 AC4 6 GLU A 398 HOH A 639 SITE 1 AC5 19 THR A 378 LEU A 379 GLY A 380 MET A 381 SITE 2 AC5 19 HIS A 403 PHE A 406 THR A 407 HIS A 410 SITE 3 AC5 19 GLU A 411 HIS A 414 HIS A 420 ARG A 437 SITE 4 AC5 19 LEU A 438 SER A 440 SER A 441 THR A 444 SITE 5 AC5 19 ILE A 446 ZN A 501 HOH A 619 SITE 1 AC6 4 HIS B 410 HIS B 414 HIS B 420 OU5 B 505 SITE 1 AC7 7 GLU B 270 ASP B 353 ASP B 360 CYS B 471 SITE 2 AC7 7 ASP B 474 CA B 503 HOH B 605 SITE 1 AC8 6 GLU B 270 ASP B 353 ASP B 474 CA B 502 SITE 2 AC8 6 HOH B 607 HOH B 614 SITE 1 AC9 6 ASP B 369 LEU B 370 CYS B 376 THR B 378 SITE 2 AC9 6 GLU B 398 HOH B 630 SITE 1 AD1 18 THR B 378 LEU B 379 GLY B 380 HIS B 403 SITE 2 AD1 18 PHE B 406 HIS B 410 GLU B 411 HIS B 420 SITE 3 AD1 18 ARG B 437 LEU B 438 SER B 440 SER B 441 SITE 4 AD1 18 LEU B 443 THR B 444 ILE B 446 ZN B 501 SITE 5 AD1 18 HOH B 603 HOH B 623 CRYST1 44.320 80.240 51.050 90.00 90.20 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022563 0.000000 0.000079 0.00000 SCALE2 0.000000 0.012463 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019589 0.00000