HEADER LYASE 03-APR-20 6YJN TITLE CRYSTAL STRUCTURE OF BETA CARBONIC ANHYDRASE FROM THE PATHOGENIC TITLE 2 BACTERIUM BURKHOLDERIA PSEUDOMALLEI. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA CARBONIC ANHYDRASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CARBONATE DEHYDRATASE,CARBONIC ANHYDRASE; COMPND 5 EC: 4.2.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 28450; SOURCE 4 GENE: CAN_1, CAN_2, BOC42_16450, CXQ84_19645, DF122_01465, SOURCE 5 ERS013345_01543, SAMEA1968934_03740; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS BETA CARBONIC ANHYDRASE, BURKHOLDERIA PSEUDOMALLEI, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ANGELI,M.FERRARONI REVDAT 3 24-JAN-24 6YJN 1 REMARK REVDAT 2 11-NOV-20 6YJN 1 REMARK REVDAT 1 10-JUN-20 6YJN 0 JRNL AUTH A.ANGELI,M.FERRARONI,M.PINTEALA,S.S.MAIER,B.C.SIMIONESCU, JRNL AUTH 2 F.CARTA,S.DEL PRETE,C.CAPASSO,C.T.SUPURAN JRNL TITL CRYSTAL STRUCTURE OF A TETRAMERIC TYPE II BETA-CARBONIC JRNL TITL 2 ANHYDRASE FROM THE PATHOGENIC BACTERIUMBURKHOLDERIA JRNL TITL 3 PSEUDOMALLEI. JRNL REF MOLECULES V. 25 2020 JRNL REFN ESSN 1420-3049 JRNL PMID 32408533 JRNL DOI 10.3390/MOLECULES25102269 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 7093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.322 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 387 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 507 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4150 REMARK 3 BIN FREE R VALUE SET COUNT : 29 REMARK 3 BIN FREE R VALUE : 0.4680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1535 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.859 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.419 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.424 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.437 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1569 ; 0.005 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2154 ; 1.454 ; 1.613 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 211 ; 7.874 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;37.273 ;22.917 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 197 ;19.725 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;16.601 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 212 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1221 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6YJN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292107740. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 5.8.0258 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7508 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 32.70 REMARK 200 R MERGE (I) : 0.28000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 8.71100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4RXY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 4000, 10% ISOPROPANOL, 100 MM REMARK 280 HEPES PH 8.5 AND 3% V/V 1,5-DIAMINOPENTENE DI-HCL., VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.21467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.42933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 37.21467 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.42933 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.21467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 74.42933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 37.21467 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 74.42933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -44.01550 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 76.23708 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -37.21467 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 -44.01550 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 76.23708 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -37.21467 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 420 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 432 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 435 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 439 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 451 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 LYS A 3 REMARK 465 ASN A 4 REMARK 465 ASP A 5 REMARK 465 HIS A 6 REMARK 465 ALA A 219 REMARK 465 SER A 220 REMARK 465 GLY A 221 REMARK 465 ALA A 222 REMARK 465 HIS A 223 REMARK 465 SER A 224 REMARK 465 ALA A 225 REMARK 465 ASP A 226 REMARK 465 ASN A 227 REMARK 465 ASP A 228 REMARK 465 VAL A 229 REMARK 465 VAL A 230 REMARK 465 ALA A 231 REMARK 465 ALA A 232 REMARK 465 ASP A 233 REMARK 465 ALA A 234 REMARK 465 ALA A 235 REMARK 465 GLN A 236 REMARK 465 LEU A 237 REMARK 465 ALA A 238 REMARK 465 GLY A 239 REMARK 465 ALA A 240 REMARK 465 VAL A 241 REMARK 465 ASP A 242 REMARK 465 LEU A 243 REMARK 465 ILE A 244 REMARK 465 ALA A 245 REMARK 465 GLN A 246 REMARK 465 THR A 247 REMARK 465 ILE A 248 REMARK 465 LYS A 249 REMARK 465 GLU A 250 REMARK 465 THR A 251 REMARK 465 LYS A 252 REMARK 465 HIS A 253 REMARK 465 ASP A 254 REMARK 465 GLY A 255 REMARK 465 CYS A 256 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 8 CG CD1 CD2 REMARK 470 SER A 9 OG REMARK 470 HIS A 10 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 11 CG CD1 CD2 REMARK 470 PHE A 12 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TRP A 18 CE3 CZ2 CZ3 CH2 REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 GLN A 28 CG CD OE1 NE2 REMARK 470 GLN A 37 CG CD OE1 NE2 REMARK 470 GLU A 40 CG CD OE1 OE2 REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 51 CG1 CG2 REMARK 470 ILE A 57 CD1 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 ILE A 70 CD1 REMARK 470 LYS A 95 CG CD CE NZ REMARK 470 ARG A 115 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 116 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 131 CZ NH1 NH2 REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 LEU A 143 CG CD1 CD2 REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 ARG A 149 NE CZ NH1 NH2 REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 VAL A 161 CG1 CG2 REMARK 470 ARG A 165 NE CZ NH1 NH2 REMARK 470 ALA A 183 CB REMARK 470 ARG A 192 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 194 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 202 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 205 CG CD OE1 NE2 REMARK 470 ASP A 207 CG OD1 OD2 REMARK 470 TYR A 210 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 212 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 217 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG PRO A 142 O HOH A 440 1.91 REMARK 500 CA GLU A 204 O HOH A 410 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 8 7.09 52.63 REMARK 500 HIS A 10 -51.41 71.31 REMARK 500 ALA A 24 -9.40 -51.93 REMARK 500 ASP A 26 -53.27 -29.57 REMARK 500 PRO A 27 74.53 -48.56 REMARK 500 TYR A 29 -3.50 -165.72 REMARK 500 ALA A 34 -7.84 -56.75 REMARK 500 GLN A 37 178.43 81.28 REMARK 500 ASP A 48 77.26 -62.50 REMARK 500 GLN A 55 -73.77 -46.10 REMARK 500 PRO A 61 170.13 -47.68 REMARK 500 ALA A 71 20.31 86.76 REMARK 500 LYS A 93 59.74 39.20 REMARK 500 ALA A 111 -91.42 -57.65 REMARK 500 LEU A 112 -57.50 -3.41 REMARK 500 HIS A 113 53.74 -102.69 REMARK 500 ASN A 114 76.74 0.10 REMARK 500 ASP A 140 12.24 -65.49 REMARK 500 TRP A 141 57.65 -113.18 REMARK 500 PRO A 142 16.61 -54.87 REMARK 500 LEU A 143 -139.27 -93.79 REMARK 500 ALA A 203 73.14 -50.87 REMARK 500 ALA A 215 21.71 -60.18 REMARK 500 ALA A 216 -64.19 -106.27 REMARK 500 LEU A 217 84.15 21.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 35 GLN A 36 -145.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 450 DISTANCE = 8.63 ANGSTROMS REMARK 525 HOH A 451 DISTANCE = 10.47 ANGSTROMS REMARK 525 HOH A 452 DISTANCE = 12.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 46 SG REMARK 620 2 ASP A 48 OD2 107.2 REMARK 620 3 HIS A 102 NE2 124.3 95.5 REMARK 620 4 CYS A 105 SG 113.1 100.2 111.8 REMARK 620 N 1 2 3 DBREF1 6YJN A 1 256 UNP A0A069AXA0_BURPE DBREF2 6YJN A A0A069AXA0 1 256 SEQRES 1 A 256 MET ASN LYS ASN ASP HIS PRO LEU SER HIS LEU PHE ASP SEQRES 2 A 256 ASN ASN ASP ALA TRP VAL LYS ARG LYS LEU ALA ASP ASP SEQRES 3 A 256 PRO GLN TYR PHE SER ARG LEU ALA ASP GLN GLN ALA PRO SEQRES 4 A 256 GLU TYR LEU TRP ILE GLY CYS SER ASP SER ARG VAL PRO SEQRES 5 A 256 ALA ASN GLN ILE ILE GLY LEU PRO PRO GLY GLU VAL PHE SEQRES 6 A 256 VAL HIS ARG ASN ILE ALA ASN VAL VAL VAL HIS THR ASP SEQRES 7 A 256 LEU ASN CYS LEU SER VAL ILE GLN PHE ALA VAL ASP LEU SEQRES 8 A 256 LEU LYS VAL LYS HIS VAL MET VAL VAL GLY HIS TYR GLY SEQRES 9 A 256 CYS SER GLY VAL ASN ALA ALA LEU HIS ASN ARG ARG VAL SEQRES 10 A 256 GLY LEU ALA ASP ASN TRP LEU HIS HIS VAL GLN ASP VAL SEQRES 11 A 256 ARG GLU LYS HIS ALA ALA LEU LEU GLU ASP TRP PRO LEU SEQRES 12 A 256 GLY GLU ALA ARG TYR ARG ARG LEU ILE GLU LEU ASN ALA SEQRES 13 A 256 ILE GLU GLN VAL VAL ASN VAL CYS ARG THR THR ILE VAL SEQRES 14 A 256 ASN ASP ALA TRP ALA ARG GLY GLN PRO LEU THR VAL HIS SEQRES 15 A 256 ALA LEU VAL TYR GLY VAL HIS ASP GLY ARG MET ARG ASN SEQRES 16 A 256 LEU GLY MET ALA VAL SER HIS ALA GLU GLN LEU ASP ALA SEQRES 17 A 256 THR TYR ARG ARG ALA VAL ALA ALA LEU SER ALA SER GLY SEQRES 18 A 256 ALA HIS SER ALA ASP ASN ASP VAL VAL ALA ALA ASP ALA SEQRES 19 A 256 ALA GLN LEU ALA GLY ALA VAL ASP LEU ILE ALA GLN THR SEQRES 20 A 256 ILE LYS GLU THR LYS HIS ASP GLY CYS HET ZN A 301 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *52(H2 O) HELIX 1 AA1 LEU A 11 ASP A 25 1 15 HELIX 2 AA2 TYR A 29 ALA A 34 1 6 HELIX 3 AA3 PRO A 52 ILE A 57 1 6 HELIX 4 AA4 ASP A 78 LYS A 93 1 16 HELIX 5 AA5 CYS A 105 HIS A 113 1 9 HELIX 6 AA6 LEU A 119 HIS A 134 1 16 HELIX 7 AA7 HIS A 134 ASP A 140 1 7 HELIX 8 AA8 GLY A 144 THR A 166 1 23 HELIX 9 AA9 THR A 166 ARG A 175 1 10 HELIX 10 AB1 GLU A 204 ALA A 215 1 12 SHEET 1 AA1 5 VAL A 64 ASN A 69 0 SHEET 2 AA1 5 TYR A 41 CYS A 46 1 N TRP A 43 O PHE A 65 SHEET 3 AA1 5 HIS A 96 HIS A 102 1 O VAL A 100 N ILE A 44 SHEET 4 AA1 5 THR A 180 TYR A 186 1 O THR A 180 N VAL A 97 SHEET 5 AA1 5 MET A 193 VAL A 200 -1 O VAL A 200 N VAL A 181 LINK SG CYS A 46 ZN ZN A 301 1555 1555 2.03 LINK OD2 ASP A 48 ZN ZN A 301 1555 1555 1.89 LINK NE2 HIS A 102 ZN ZN A 301 1555 1555 1.86 LINK SG CYS A 105 ZN ZN A 301 1555 1555 2.08 CRYST1 88.031 88.031 111.644 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011360 0.006558 0.000000 0.00000 SCALE2 0.000000 0.013117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008957 0.00000