HEADER TRANSFERASE 05-APR-20 6YJW TITLE STRUCTURE OF FRAGARIA ANANASSA O-METHYLTRANSFERASE CRYSTALLIZED WITH TITLE 2 PAS POLYPEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: O-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRAGARIA ANANASSA; SOURCE 3 ORGANISM_COMMON: STRAWBERRY; SOURCE 4 ORGANISM_TAXID: 3747; SOURCE 5 GENE: OMT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PASK75 KEYWDS PAS POLYPEPTIDE, P/A200, PRECIPITANT, PROLINE-ALANINE RICH SEQUENCE, KEYWDS 2 PROTEIN CRYSTALLIZATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SCHIEFNER,A.SKERRA REVDAT 2 24-JAN-24 6YJW 1 REMARK REVDAT 1 22-JUL-20 6YJW 0 JRNL AUTH A.SCHIEFNER,R.WALSER,M.GEBAUER,A.SKERRA JRNL TITL PROLINE/ALANINE-RICH SEQUENCE (PAS) POLYPEPTIDES AS AN JRNL TITL 2 ALTERNATIVE TO PEG PRECIPITANTS FOR PROTEIN CRYSTALLIZATION. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 76 320 2020 JRNL REFN ESSN 2053-230X JRNL PMID 32627748 JRNL DOI 10.1107/S2053230X20008328 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 53735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2974 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3942 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 204 REMARK 3 BIN FREE R VALUE : 0.2860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5398 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 414 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : 1.20000 REMARK 3 B33 (A**2) : -1.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.354 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5693 ; 0.013 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 5327 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7715 ; 1.560 ; 1.666 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12473 ; 0.957 ; 1.662 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 720 ; 6.252 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 232 ;34.509 ;24.138 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 977 ;15.297 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.088 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 744 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6281 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1019 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 13 365 B 13 365 10904 0.060 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3468 -22.5841 17.6171 REMARK 3 T TENSOR REMARK 3 T11: 0.0395 T22: 0.0472 REMARK 3 T33: 0.0216 T12: -0.0059 REMARK 3 T13: -0.0018 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.0965 L22: 1.4225 REMARK 3 L33: 1.0429 L12: -0.4835 REMARK 3 L13: -0.4798 L23: 0.3562 REMARK 3 S TENSOR REMARK 3 S11: -0.0759 S12: -0.0897 S13: 0.0010 REMARK 3 S21: 0.0099 S22: 0.1078 S23: -0.1595 REMARK 3 S31: 0.1197 S32: 0.1564 S33: -0.0319 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 501 REMARK 3 ORIGIN FOR THE GROUP (A): -19.1365 -9.1521 24.6001 REMARK 3 T TENSOR REMARK 3 T11: 0.0323 T22: 0.0910 REMARK 3 T33: 0.0708 T12: 0.0123 REMARK 3 T13: 0.0145 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 1.2814 L22: 1.0648 REMARK 3 L33: 0.9727 L12: -0.3238 REMARK 3 L13: 0.0112 L23: -0.0347 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: -0.1165 S13: 0.1425 REMARK 3 S21: 0.0864 S22: 0.0826 S23: 0.1845 REMARK 3 S31: -0.1061 S32: -0.2306 S33: -0.0579 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6YJW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292107676. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56709 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 34.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.894 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 8.62 REMARK 200 R MERGE FOR SHELL (I) : 1.01400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6I71 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5 % (W/V) PA200 0.1 M HEPES/NAOH REMARK 280 0.2 M MGCL2, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.46600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.44850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.66600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.44850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.46600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.66600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 4 REMARK 465 LYS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 GLY A 12 REMARK 465 MET B 4 REMARK 465 LYS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 HIS B 11 REMARK 465 GLY B 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 95 NH2 ARG B 95 3555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 138 CD GLU A 138 OE2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 267 -61.42 -104.58 REMARK 500 ILE B 267 -60.14 -103.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 348 0.12 SIDE CHAIN REMARK 500 ARG B 348 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 695 DISTANCE = 5.99 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 405 DBREF 6YJW A 14 365 UNP Q9M602 Q9M602_FRAAN 14 365 DBREF 6YJW B 14 365 UNP Q9M602 Q9M602_FRAAN 14 365 SEQADV 6YJW MET A 4 UNP Q9M602 INITIATING METHIONINE SEQADV 6YJW LYS A 5 UNP Q9M602 EXPRESSION TAG SEQADV 6YJW HIS A 6 UNP Q9M602 EXPRESSION TAG SEQADV 6YJW HIS A 7 UNP Q9M602 EXPRESSION TAG SEQADV 6YJW HIS A 8 UNP Q9M602 EXPRESSION TAG SEQADV 6YJW HIS A 9 UNP Q9M602 EXPRESSION TAG SEQADV 6YJW HIS A 10 UNP Q9M602 EXPRESSION TAG SEQADV 6YJW HIS A 11 UNP Q9M602 EXPRESSION TAG SEQADV 6YJW GLY A 12 UNP Q9M602 EXPRESSION TAG SEQADV 6YJW ALA A 13 UNP Q9M602 EXPRESSION TAG SEQADV 6YJW MET B 4 UNP Q9M602 INITIATING METHIONINE SEQADV 6YJW LYS B 5 UNP Q9M602 EXPRESSION TAG SEQADV 6YJW HIS B 6 UNP Q9M602 EXPRESSION TAG SEQADV 6YJW HIS B 7 UNP Q9M602 EXPRESSION TAG SEQADV 6YJW HIS B 8 UNP Q9M602 EXPRESSION TAG SEQADV 6YJW HIS B 9 UNP Q9M602 EXPRESSION TAG SEQADV 6YJW HIS B 10 UNP Q9M602 EXPRESSION TAG SEQADV 6YJW HIS B 11 UNP Q9M602 EXPRESSION TAG SEQADV 6YJW GLY B 12 UNP Q9M602 EXPRESSION TAG SEQADV 6YJW ALA B 13 UNP Q9M602 EXPRESSION TAG SEQRES 1 A 362 MET LYS HIS HIS HIS HIS HIS HIS GLY ALA VAL SER ASP SEQRES 2 A 362 GLU GLU ALA ASN LEU PHE ALA MET GLN LEU ALA SER ALA SEQRES 3 A 362 SER VAL LEU PRO MET VAL LEU LYS ALA ALA ILE GLU LEU SEQRES 4 A 362 ASP LEU LEU GLU ILE MET ALA LYS ALA GLY PRO GLY SER SEQRES 5 A 362 PHE LEU SER PRO SER ASP LEU ALA SER GLN LEU PRO THR SEQRES 6 A 362 LYS ASN PRO GLU ALA PRO VAL MET LEU ASP ARG MET LEU SEQRES 7 A 362 ARG LEU LEU ALA SER TYR SER ILE LEU THR CYS SER LEU SEQRES 8 A 362 ARG THR LEU PRO ASP GLY LYS VAL GLU ARG LEU TYR CYS SEQRES 9 A 362 LEU GLY PRO VAL CYS LYS PHE LEU THR LYS ASN GLU ASP SEQRES 10 A 362 GLY VAL SER ILE ALA ALA LEU CYS LEU MET ASN GLN ASP SEQRES 11 A 362 LYS VAL LEU VAL GLU SER TRP TYR HIS LEU LYS ASP ALA SEQRES 12 A 362 VAL LEU ASP GLY GLY ILE PRO PHE ASN LYS ALA TYR GLY SEQRES 13 A 362 MET THR ALA PHE ASP TYR HIS GLY THR ASP PRO ARG PHE SEQRES 14 A 362 ASN LYS VAL PHE ASN LYS GLY MET ALA ASP HIS SER THR SEQRES 15 A 362 ILE THR MET LYS LYS ILE LEU GLU THR TYR LYS GLY PHE SEQRES 16 A 362 GLU GLY LEU LYS SER ILE VAL ASP VAL GLY GLY GLY THR SEQRES 17 A 362 GLY ALA VAL VAL ASN MET ILE VAL SER LYS TYR PRO SER SEQRES 18 A 362 ILE LYS GLY ILE ASN PHE ASP LEU PRO HIS VAL ILE GLU SEQRES 19 A 362 ASP ALA PRO GLN TYR PRO GLY VAL GLN HIS VAL GLY GLY SEQRES 20 A 362 ASP MET PHE VAL SER VAL PRO LYS GLY ASN ALA ILE PHE SEQRES 21 A 362 MET LYS TRP ILE CYS HIS ASP TRP SER ASP GLU HIS CYS SEQRES 22 A 362 ILE LYS PHE LEU LYS ASN CYS TYR ALA ALA LEU PRO ASP SEQRES 23 A 362 ASP GLY LYS VAL ILE LEU ALA GLU CYS ILE LEU PRO VAL SEQRES 24 A 362 ALA PRO ASP THR SER LEU ALA THR LYS GLY VAL VAL HIS SEQRES 25 A 362 MET ASP VAL ILE MET LEU ALA HIS ASN PRO GLY GLY LYS SEQRES 26 A 362 GLU ARG THR GLU GLN GLU PHE GLU ALA LEU ALA LYS GLY SEQRES 27 A 362 SER GLY PHE GLN GLY ILE ARG VAL CYS CYS ASP ALA PHE SEQRES 28 A 362 ASN THR TYR VAL ILE GLU PHE LEU LYS LYS ILE SEQRES 1 B 362 MET LYS HIS HIS HIS HIS HIS HIS GLY ALA VAL SER ASP SEQRES 2 B 362 GLU GLU ALA ASN LEU PHE ALA MET GLN LEU ALA SER ALA SEQRES 3 B 362 SER VAL LEU PRO MET VAL LEU LYS ALA ALA ILE GLU LEU SEQRES 4 B 362 ASP LEU LEU GLU ILE MET ALA LYS ALA GLY PRO GLY SER SEQRES 5 B 362 PHE LEU SER PRO SER ASP LEU ALA SER GLN LEU PRO THR SEQRES 6 B 362 LYS ASN PRO GLU ALA PRO VAL MET LEU ASP ARG MET LEU SEQRES 7 B 362 ARG LEU LEU ALA SER TYR SER ILE LEU THR CYS SER LEU SEQRES 8 B 362 ARG THR LEU PRO ASP GLY LYS VAL GLU ARG LEU TYR CYS SEQRES 9 B 362 LEU GLY PRO VAL CYS LYS PHE LEU THR LYS ASN GLU ASP SEQRES 10 B 362 GLY VAL SER ILE ALA ALA LEU CYS LEU MET ASN GLN ASP SEQRES 11 B 362 LYS VAL LEU VAL GLU SER TRP TYR HIS LEU LYS ASP ALA SEQRES 12 B 362 VAL LEU ASP GLY GLY ILE PRO PHE ASN LYS ALA TYR GLY SEQRES 13 B 362 MET THR ALA PHE ASP TYR HIS GLY THR ASP PRO ARG PHE SEQRES 14 B 362 ASN LYS VAL PHE ASN LYS GLY MET ALA ASP HIS SER THR SEQRES 15 B 362 ILE THR MET LYS LYS ILE LEU GLU THR TYR LYS GLY PHE SEQRES 16 B 362 GLU GLY LEU LYS SER ILE VAL ASP VAL GLY GLY GLY THR SEQRES 17 B 362 GLY ALA VAL VAL ASN MET ILE VAL SER LYS TYR PRO SER SEQRES 18 B 362 ILE LYS GLY ILE ASN PHE ASP LEU PRO HIS VAL ILE GLU SEQRES 19 B 362 ASP ALA PRO GLN TYR PRO GLY VAL GLN HIS VAL GLY GLY SEQRES 20 B 362 ASP MET PHE VAL SER VAL PRO LYS GLY ASN ALA ILE PHE SEQRES 21 B 362 MET LYS TRP ILE CYS HIS ASP TRP SER ASP GLU HIS CYS SEQRES 22 B 362 ILE LYS PHE LEU LYS ASN CYS TYR ALA ALA LEU PRO ASP SEQRES 23 B 362 ASP GLY LYS VAL ILE LEU ALA GLU CYS ILE LEU PRO VAL SEQRES 24 B 362 ALA PRO ASP THR SER LEU ALA THR LYS GLY VAL VAL HIS SEQRES 25 B 362 MET ASP VAL ILE MET LEU ALA HIS ASN PRO GLY GLY LYS SEQRES 26 B 362 GLU ARG THR GLU GLN GLU PHE GLU ALA LEU ALA LYS GLY SEQRES 27 B 362 SER GLY PHE GLN GLY ILE ARG VAL CYS CYS ASP ALA PHE SEQRES 28 B 362 ASN THR TYR VAL ILE GLU PHE LEU LYS LYS ILE HET SAH A 401 26 HET EPE A 402 15 HET EDO A 403 4 HET EDO A 404 4 HET SAH B 401 26 HET EPE B 402 15 HET EDO B 403 4 HET EDO B 404 4 HET EDO B 405 4 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EPE HEPES HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SAH 2(C14 H20 N6 O5 S) FORMUL 4 EPE 2(C8 H18 N2 O4 S) FORMUL 5 EDO 5(C2 H6 O2) FORMUL 12 HOH *414(H2 O) HELIX 1 AA1 SER A 15 SER A 28 1 14 HELIX 2 AA2 SER A 30 LEU A 42 1 13 HELIX 3 AA3 ASP A 43 ALA A 51 1 9 HELIX 4 AA4 SER A 58 SER A 64 1 7 HELIX 5 AA5 GLU A 72 TYR A 87 1 16 HELIX 6 AA6 PRO A 110 LEU A 115 5 6 HELIX 7 AA7 ILE A 124 GLN A 132 1 9 HELIX 8 AA8 ASP A 133 GLU A 138 1 6 HELIX 9 AA9 SER A 139 TYR A 141 5 3 HELIX 10 AB1 HIS A 142 GLY A 150 1 9 HELIX 11 AB2 ILE A 152 GLY A 159 1 8 HELIX 12 AB3 THR A 161 GLY A 167 1 7 HELIX 13 AB4 ASP A 169 LEU A 192 1 24 HELIX 14 AB5 GLY A 212 TYR A 222 1 11 HELIX 15 AB6 LEU A 232 GLU A 237 1 6 HELIX 16 AB7 ILE A 267 TRP A 271 5 5 HELIX 17 AB8 SER A 272 LEU A 287 1 16 HELIX 18 AB9 SER A 307 ASN A 324 1 18 HELIX 19 AC1 THR A 331 SER A 342 1 12 HELIX 20 AC2 SER B 15 SER B 28 1 14 HELIX 21 AC3 SER B 30 LEU B 42 1 13 HELIX 22 AC4 ASP B 43 ALA B 51 1 9 HELIX 23 AC5 SER B 58 SER B 64 1 7 HELIX 24 AC6 GLU B 72 TYR B 87 1 16 HELIX 25 AC7 PRO B 110 LEU B 115 5 6 HELIX 26 AC8 ILE B 124 GLN B 132 1 9 HELIX 27 AC9 ASP B 133 TYR B 141 1 9 HELIX 28 AD1 HIS B 142 GLY B 150 1 9 HELIX 29 AD2 ILE B 152 GLY B 159 1 8 HELIX 30 AD3 THR B 161 GLY B 167 1 7 HELIX 31 AD4 ASP B 169 LEU B 192 1 24 HELIX 32 AD5 GLY B 212 TYR B 222 1 11 HELIX 33 AD6 LEU B 232 GLU B 237 1 6 HELIX 34 AD7 ILE B 267 TRP B 271 5 5 HELIX 35 AD8 SER B 272 LEU B 287 1 16 HELIX 36 AD9 SER B 307 ASN B 324 1 18 HELIX 37 AE1 THR B 331 SER B 342 1 12 SHEET 1 AA1 2 LEU A 90 THR A 96 0 SHEET 2 AA1 2 VAL A 102 LEU A 108 -1 O GLU A 103 N ARG A 95 SHEET 1 AA2 7 VAL A 245 GLY A 249 0 SHEET 2 AA2 7 LYS A 226 ASP A 231 1 N ASN A 229 O VAL A 248 SHEET 3 AA2 7 SER A 203 VAL A 207 1 N ASP A 206 O PHE A 230 SHEET 4 AA2 7 ALA A 261 LYS A 265 1 O PHE A 263 N VAL A 205 SHEET 5 AA2 7 LYS A 292 GLU A 297 1 O ILE A 294 N ILE A 262 SHEET 6 AA2 7 THR A 356 LEU A 362 -1 O ILE A 359 N LEU A 295 SHEET 7 AA2 7 GLY A 346 ALA A 353 -1 N ARG A 348 O GLU A 360 SHEET 1 AA3 2 LEU B 90 THR B 96 0 SHEET 2 AA3 2 VAL B 102 LEU B 108 -1 O GLU B 103 N ARG B 95 SHEET 1 AA4 7 VAL B 245 GLY B 249 0 SHEET 2 AA4 7 LYS B 226 ASP B 231 1 N ASN B 229 O VAL B 248 SHEET 3 AA4 7 SER B 203 VAL B 207 1 N ASP B 206 O PHE B 230 SHEET 4 AA4 7 ALA B 261 LYS B 265 1 O PHE B 263 N VAL B 205 SHEET 5 AA4 7 LYS B 292 GLU B 297 1 O ILE B 294 N ILE B 262 SHEET 6 AA4 7 THR B 356 LEU B 362 -1 O ILE B 359 N LEU B 295 SHEET 7 AA4 7 GLY B 346 ALA B 353 -1 N CYS B 350 O VAL B 358 SSBOND 1 CYS A 350 CYS A 351 1555 1555 2.16 SSBOND 2 CYS B 350 CYS B 351 1555 1555 2.12 SITE 1 AC1 17 MET A 180 SER A 184 GLY A 208 ASP A 231 SITE 2 AC1 17 VAL A 235 ASP A 251 MET A 252 LYS A 265 SITE 3 AC1 17 ILE A 267 ASP A 270 HOH A 504 HOH A 551 SITE 4 AC1 17 HOH A 565 HOH A 614 HOH A 621 HOH A 624 SITE 5 AC1 17 HOH A 637 SITE 1 AC2 8 ASP A 164 ASP A 251 HIS A 275 LYS A 278 SITE 2 AC2 8 HOH A 567 HOH A 575 HOH A 590 GLY B 167 SITE 1 AC3 7 LYS A 37 GLU A 41 ASP A 133 LYS A 134 SITE 2 AC3 7 ARG A 171 HOH A 511 HOH A 535 SITE 1 AC4 6 ARG A 79 ARG A 82 ARG A 104 LEU B 300 SITE 2 AC4 6 HOH B 544 HOH B 567 SITE 1 AC5 17 PHE B 163 MET B 180 SER B 184 GLY B 208 SITE 2 AC5 17 ASP B 231 VAL B 235 ASP B 251 MET B 252 SITE 3 AC5 17 LYS B 265 ILE B 267 ASP B 270 HOH B 527 SITE 4 AC5 17 HOH B 541 HOH B 574 HOH B 589 HOH B 600 SITE 5 AC5 17 HOH B 630 SITE 1 AC6 7 LEU B 232 ASP B 251 PHE B 253 HIS B 275 SITE 2 AC6 7 LYS B 278 HOH B 583 HOH B 605 SITE 1 AC7 5 LYS B 37 GLU B 41 ASP B 133 LYS B 134 SITE 2 AC7 5 HOH B 523 SITE 1 AC8 6 MET B 130 LEU B 136 PHE B 176 HOH B 576 SITE 2 AC8 6 HOH B 588 HOH B 596 SITE 1 AC9 7 LEU A 300 HOH A 545 HOH A 592 ARG B 79 SITE 2 AC9 7 ARG B 82 HOH B 612 HOH B 652 CRYST1 70.932 89.332 150.897 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014098 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011194 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006627 0.00000