HEADER TRANSLATION 07-APR-20 6YLR TITLE TRANSLATION INITIATION FACTOR 4E IN COMPLEX WITH BN7GPPPG MRNA 5' CAP TITLE 2 ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: EUKARYOTIC TRANSLATION INITIATION FACTOR 4E; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MRNA CAP-BINDING PROTEIN,EIF-4F 25 KDA SUBUNIT; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: EIF4E; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CAP ANALOG, TRANSLATION INITIATION, N7-BENZYL DINUCLEOTIDE, KEYWDS 2 TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR D.KUBACKA,R.WOJCIK,M.R.BARANOWSKI,M.WARMINSKI,J.KOWALSKA,J.JEMIELITY REVDAT 3 24-JAN-24 6YLR 1 JRNL REVDAT 2 29-DEC-21 6YLR 1 JRNL REVDAT 1 15-APR-20 6YLR 0 JRNL AUTH R.WOJCIK,M.R.BARANOWSKI,L.MARKIEWICZ,D.KUBACKA,M.BEDNARCZYK, JRNL AUTH 2 N.BARAN,A.WOJTCZAK,P.J.SIKORSKI,J.ZUBEREK,J.KOWALSKA, JRNL AUTH 3 J.JEMIELITY JRNL TITL NOVEL N7-ARYLMETHYL SUBSTITUTED DINUCLEOTIDE MRNA 5' CAP JRNL TITL 2 ANALOGS: SYNTHESIS AND EVALUATION AS MODULATORS OF JRNL TITL 3 TRANSLATION. JRNL REF PHARMACEUTICS V. 13 2021 JRNL REFN ESSN 1999-4923 JRNL PMID 34834356 JRNL DOI 10.3390/PHARMACEUTICS13111941 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.378 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 19183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.1989 - 3.3331 1.00 2610 137 0.1791 0.2096 REMARK 3 2 3.3331 - 2.9118 1.00 2620 138 0.2246 0.2825 REMARK 3 3 2.9118 - 2.6456 1.00 2580 136 0.2584 0.2971 REMARK 3 4 2.6456 - 2.4560 1.00 2600 137 0.3065 0.3963 REMARK 3 5 2.4560 - 2.3112 1.00 2590 137 0.3290 0.4108 REMARK 3 6 2.3112 - 2.1955 0.98 2520 133 0.3431 0.3689 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.348 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.714 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2938 REMARK 3 ANGLE : 0.761 4026 REMARK 3 CHIRALITY : 0.049 436 REMARK 3 PLANARITY : 0.003 500 REMARK 3 DIHEDRAL : 9.627 2014 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 117.2151 -37.0358 20.0480 REMARK 3 T TENSOR REMARK 3 T11: 0.4284 T22: 0.5253 REMARK 3 T33: 0.3208 T12: 0.0148 REMARK 3 T13: 0.0413 T23: -0.0842 REMARK 3 L TENSOR REMARK 3 L11: 5.8595 L22: 7.9178 REMARK 3 L33: 6.2651 L12: 2.4724 REMARK 3 L13: 1.2568 L23: 2.2516 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: -0.7318 S13: 0.7423 REMARK 3 S21: 0.7235 S22: -0.3038 S23: 0.9539 REMARK 3 S31: -0.3748 S32: 0.1039 S33: 0.2208 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 123.7639 -43.0285 0.6600 REMARK 3 T TENSOR REMARK 3 T11: 0.2619 T22: 0.2759 REMARK 3 T33: 0.1344 T12: -0.0019 REMARK 3 T13: -0.0291 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.5474 L22: 2.0442 REMARK 3 L33: 1.0655 L12: -0.2553 REMARK 3 L13: -0.3157 L23: 1.2103 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: -0.0156 S13: 0.0857 REMARK 3 S21: -0.1445 S22: 0.0956 S23: 0.1183 REMARK 3 S31: -0.0994 S32: -0.0938 S33: -0.1262 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 112.3911 -45.1371 2.6195 REMARK 3 T TENSOR REMARK 3 T11: 0.2019 T22: 0.3309 REMARK 3 T33: 0.1941 T12: 0.0083 REMARK 3 T13: -0.0350 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 3.7527 L22: 3.1864 REMARK 3 L33: 1.7445 L12: 0.9154 REMARK 3 L13: -1.4358 L23: 1.2238 REMARK 3 S TENSOR REMARK 3 S11: -0.0654 S12: 0.0193 S13: 0.1362 REMARK 3 S21: -0.1207 S22: -0.0363 S23: 0.3430 REMARK 3 S31: -0.2919 S32: -0.3748 S33: 0.0286 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 112.9169 -55.0977 -3.5528 REMARK 3 T TENSOR REMARK 3 T11: 0.2471 T22: 0.3194 REMARK 3 T33: 0.2539 T12: -0.0185 REMARK 3 T13: -0.0638 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 2.9590 L22: 3.1591 REMARK 3 L33: 2.0483 L12: -0.8607 REMARK 3 L13: -0.2846 L23: 0.4122 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: 0.4028 S13: -0.3494 REMARK 3 S21: -0.3100 S22: -0.0385 S23: 0.5483 REMARK 3 S31: 0.1237 S32: -0.2793 S33: 0.0154 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 29 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 101.4615 -49.2977 16.1391 REMARK 3 T TENSOR REMARK 3 T11: 0.7673 T22: 0.8013 REMARK 3 T33: 0.7466 T12: 0.1600 REMARK 3 T13: 0.0760 T23: 0.1015 REMARK 3 L TENSOR REMARK 3 L11: 5.2564 L22: 5.0130 REMARK 3 L33: 8.9759 L12: -5.0644 REMARK 3 L13: -6.8596 L23: 6.6553 REMARK 3 S TENSOR REMARK 3 S11: -1.2450 S12: -0.8942 S13: -0.9923 REMARK 3 S21: 1.5107 S22: 1.0708 S23: 0.9296 REMARK 3 S31: 1.2601 S32: 0.0676 S33: 0.2490 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 88.4265 -27.2297 8.1553 REMARK 3 T TENSOR REMARK 3 T11: 0.4172 T22: 0.8853 REMARK 3 T33: 0.7059 T12: 0.2404 REMARK 3 T13: 0.0193 T23: 0.0913 REMARK 3 L TENSOR REMARK 3 L11: 5.4308 L22: 8.6456 REMARK 3 L33: 2.4267 L12: -4.0920 REMARK 3 L13: 3.5406 L23: -2.5490 REMARK 3 S TENSOR REMARK 3 S11: 0.0152 S12: 1.5616 S13: 0.5918 REMARK 3 S21: -0.7908 S22: -0.7074 S23: 0.6844 REMARK 3 S31: -0.2108 S32: -0.5503 S33: 0.4433 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 94.4190 -34.0977 6.4058 REMARK 3 T TENSOR REMARK 3 T11: 0.2578 T22: 0.6318 REMARK 3 T33: 0.6329 T12: 0.0881 REMARK 3 T13: 0.0399 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 4.9714 L22: 5.0653 REMARK 3 L33: 1.4549 L12: -3.2827 REMARK 3 L13: -1.7346 L23: 0.4420 REMARK 3 S TENSOR REMARK 3 S11: 0.2592 S12: 0.5162 S13: -0.1856 REMARK 3 S21: -0.6243 S22: -0.3264 S23: 0.7412 REMARK 3 S31: 0.1194 S32: -0.7184 S33: 0.2914 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 96 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 89.8050 -22.2013 19.1428 REMARK 3 T TENSOR REMARK 3 T11: 0.7348 T22: 0.9553 REMARK 3 T33: 0.9423 T12: 0.2928 REMARK 3 T13: 0.0057 T23: -0.1997 REMARK 3 L TENSOR REMARK 3 L11: 7.3990 L22: 5.6831 REMARK 3 L33: 6.0632 L12: 1.8659 REMARK 3 L13: 1.6724 L23: -0.8375 REMARK 3 S TENSOR REMARK 3 S11: -1.4786 S12: -1.4451 S13: 1.4217 REMARK 3 S21: 1.5490 S22: 1.1955 S23: -0.0612 REMARK 3 S31: -1.0680 S32: -0.2132 S33: 0.2943 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 103.9642 -25.9091 9.8637 REMARK 3 T TENSOR REMARK 3 T11: 0.4643 T22: 0.4721 REMARK 3 T33: 1.0631 T12: 0.0815 REMARK 3 T13: 0.0917 T23: -0.0968 REMARK 3 L TENSOR REMARK 3 L11: 7.1149 L22: 5.7878 REMARK 3 L33: 2.3198 L12: -1.5376 REMARK 3 L13: -1.0261 L23: -0.7581 REMARK 3 S TENSOR REMARK 3 S11: -0.3330 S12: -0.4266 S13: 1.3803 REMARK 3 S21: 0.0458 S22: 0.4502 S23: -1.3050 REMARK 3 S31: -0.5002 S32: -0.1063 S33: -0.0573 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): 98.6354 -19.5600 10.1398 REMARK 3 T TENSOR REMARK 3 T11: 0.5285 T22: 0.5694 REMARK 3 T33: 1.5211 T12: 0.0460 REMARK 3 T13: -0.0390 T23: 0.1940 REMARK 3 L TENSOR REMARK 3 L11: 8.9500 L22: 7.4874 REMARK 3 L33: 4.9674 L12: -3.6568 REMARK 3 L13: 0.2275 L23: 0.9054 REMARK 3 S TENSOR REMARK 3 S11: -0.7290 S12: 0.2073 S13: 2.1611 REMARK 3 S21: -0.2686 S22: -0.3584 S23: -1.0470 REMARK 3 S31: -1.1899 S32: 0.6960 S33: 0.8902 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 173 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 109.7012 -21.6680 17.8492 REMARK 3 T TENSOR REMARK 3 T11: 0.5134 T22: 0.5889 REMARK 3 T33: 1.3905 T12: 0.1205 REMARK 3 T13: -0.0434 T23: -0.4190 REMARK 3 L TENSOR REMARK 3 L11: 1.4447 L22: 4.2383 REMARK 3 L33: 1.0652 L12: -1.7572 REMARK 3 L13: -0.7927 L23: 0.0934 REMARK 3 S TENSOR REMARK 3 S11: -0.9019 S12: -0.6357 S13: 0.4688 REMARK 3 S21: 0.7634 S22: 0.5696 S23: -1.1575 REMARK 3 S31: -0.0233 S32: 0.1822 S33: -0.4331 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 187 THROUGH 202 ) REMARK 3 ORIGIN FOR THE GROUP (A): 106.2150 -15.9966 11.0041 REMARK 3 T TENSOR REMARK 3 T11: 1.0001 T22: 0.5056 REMARK 3 T33: 1.8524 T12: -0.0576 REMARK 3 T13: 0.0943 T23: 0.0371 REMARK 3 L TENSOR REMARK 3 L11: 0.6719 L22: 1.5147 REMARK 3 L33: 5.8956 L12: 1.0019 REMARK 3 L13: 1.8158 L23: 2.5817 REMARK 3 S TENSOR REMARK 3 S11: 0.8676 S12: -0.0159 S13: 1.3516 REMARK 3 S21: -0.6798 S22: -0.4701 S23: -0.6695 REMARK 3 S31: -1.6793 S32: -0.1100 S33: -0.1213 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 32 THROUGH 34 OR REMARK 3 (RESID 35 THROUGH 36 AND (NAME N OR NAME REMARK 3 CA OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 37 THROUGH 48 OR (RESID 49 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR (RESID 54 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR (RESID 55 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB OR NAME OG1)) REMARK 3 OR RESID 56 OR (RESID 57 THROUGH 59 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 60 OR (RESID 61 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 62 THROUGH 77 OR REMARK 3 (RESID 78 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 79 OR REMARK 3 (RESID 80 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 81 REMARK 3 THROUGH 85 OR (RESID 86 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 87 THROUGH 104 OR (RESID 105 REMARK 3 THROUGH 106 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 107 OR (RESID 108 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 RESID 109 THROUGH 114 OR (RESID 115 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 116 OR (RESID 117 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 118 OR (RESID 119 REMARK 3 THROUGH 120 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 121 OR (RESID 122 THROUGH 123 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 124 OR (RESID 125 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 126 THROUGH 161 OR (RESID 162 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 163 THROUGH 168 REMARK 3 OR (RESID 169 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 170 OR (RESID 171 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB )) OR REMARK 3 (RESID 173 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG OR NAME REMARK 3 CD OR NAME NE )) OR RESID 174 THROUGH 180 REMARK 3 OR (RESID 181 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 182 THROUGH 183 OR (RESID 184 THROUGH 185 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 186 THROUGH 188 REMARK 3 OR (RESID 189 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 190 THROUGH 192 OR (RESID 193 THROUGH 195 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 196 THROUGH 197 REMARK 3 OR (RESID 198 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 199 THROUGH 201 OR (RESID 202 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )))) REMARK 3 SELECTION : (CHAIN 'B' AND ((RESID 32 THROUGH 33 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 34 THROUGH 171 OR REMARK 3 RESID 173 THROUGH 202)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YLR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292107776. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19244 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.195 REMARK 200 RESOLUTION RANGE LOW (A) : 42.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.14730 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.86530 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1L8B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE PH 9.0, 0.1 M REMARK 280 NACL, 25 % W/V PEG 1500, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.22300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.83450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 10.61150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 27 REMARK 465 VAL A 28 REMARK 465 ALA A 29 REMARK 465 ASN A 30 REMARK 465 PRO A 31 REMARK 465 GLY A 208 REMARK 465 SER A 209 REMARK 465 MET B 27 REMARK 465 VAL B 28 REMARK 465 ASN B 50 REMARK 465 ASP B 51 REMARK 465 LYS B 52 REMARK 465 SER B 53 REMARK 465 THR B 203 REMARK 465 ALA B 204 REMARK 465 THR B 205 REMARK 465 LYS B 206 REMARK 465 SER B 207 REMARK 465 GLY B 208 REMARK 465 SER B 209 REMARK 465 THR B 210 REMARK 465 THR B 211 REMARK 465 LYS B 212 REMARK 465 ASN B 213 REMARK 465 ARG B 214 REMARK 465 PHE B 215 REMARK 465 VAL B 216 REMARK 465 VAL B 217 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 HIS A 33 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 50 CG OD1 ND2 REMARK 470 GLN A 120 CG CD OE1 NE2 REMARK 470 ARG A 123 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 ASN B 30 CG OD1 ND2 REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 ILE B 35 CG1 CG2 CD1 REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 THR B 55 CG2 REMARK 470 GLN B 57 CG CD OE1 NE2 REMARK 470 ASN B 59 CG OD1 ND2 REMARK 470 ARG B 61 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 78 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 80 CG CD OE1 NE2 REMARK 470 MET B 86 CG SD CE REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 LYS B 106 CG CD CE NZ REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 ILE B 115 CG1 CG2 CD1 REMARK 470 LEU B 117 CG CD1 CD2 REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 GLN B 120 CG CD OE1 NE2 REMARK 470 ARG B 122 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 123 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 125 CG OD1 OD2 REMARK 470 LYS B 159 CG CD CE NZ REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 GLU B 169 CG CD OE1 OE2 REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 470 ASN B 172 CG OD1 ND2 REMARK 470 ARG B 173 CZ NH1 NH2 REMARK 470 ARG B 181 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 184 CG CD CE NZ REMARK 470 GLU B 185 CG CD OE1 OE2 REMARK 470 LEU B 189 CG CD1 CD2 REMARK 470 LYS B 192 CG CD CE NZ REMARK 470 ILE B 193 CG1 CG2 CD1 REMARK 470 VAL B 194 CG1 CG2 REMARK 470 ILE B 195 CG1 CG2 CD1 REMARK 470 GLN B 198 CG CD OE1 NE2 REMARK 470 ASP B 202 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 67 21.73 -142.69 REMARK 500 ASP A 143 -122.00 59.14 REMARK 500 ASP B 67 22.05 -143.14 REMARK 500 ASP B 143 -124.27 59.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OYE B 300 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OYE A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OYE B 300 DBREF 6YLR A 28 217 UNP P63073 IF4E_MOUSE 28 217 DBREF 6YLR B 28 217 UNP P63073 IF4E_MOUSE 28 217 SEQADV 6YLR MET A 27 UNP P63073 INITIATING METHIONINE SEQADV 6YLR MET B 27 UNP P63073 INITIATING METHIONINE SEQRES 1 A 191 MET VAL ALA ASN PRO GLU HIS TYR ILE LYS HIS PRO LEU SEQRES 2 A 191 GLN ASN ARG TRP ALA LEU TRP PHE PHE LYS ASN ASP LYS SEQRES 3 A 191 SER LYS THR TRP GLN ALA ASN LEU ARG LEU ILE SER LYS SEQRES 4 A 191 PHE ASP THR VAL GLU ASP PHE TRP ALA LEU TYR ASN HIS SEQRES 5 A 191 ILE GLN LEU SER SER ASN LEU MET PRO GLY CYS ASP TYR SEQRES 6 A 191 SER LEU PHE LYS ASP GLY ILE GLU PRO MET TRP GLU ASP SEQRES 7 A 191 GLU LYS ASN LYS ARG GLY GLY ARG TRP LEU ILE THR LEU SEQRES 8 A 191 ASN LYS GLN GLN ARG ARG SER ASP LEU ASP ARG PHE TRP SEQRES 9 A 191 LEU GLU THR LEU LEU CYS LEU ILE GLY GLU SER PHE ASP SEQRES 10 A 191 ASP TYR SER ASP ASP VAL CYS GLY ALA VAL VAL ASN VAL SEQRES 11 A 191 ARG ALA LYS GLY ASP LYS ILE ALA ILE TRP THR THR GLU SEQRES 12 A 191 CYS GLU ASN ARG ASP ALA VAL THR HIS ILE GLY ARG VAL SEQRES 13 A 191 TYR LYS GLU ARG LEU GLY LEU PRO PRO LYS ILE VAL ILE SEQRES 14 A 191 GLY TYR GLN SER HIS ALA ASP THR ALA THR LYS SER GLY SEQRES 15 A 191 SER THR THR LYS ASN ARG PHE VAL VAL SEQRES 1 B 191 MET VAL ALA ASN PRO GLU HIS TYR ILE LYS HIS PRO LEU SEQRES 2 B 191 GLN ASN ARG TRP ALA LEU TRP PHE PHE LYS ASN ASP LYS SEQRES 3 B 191 SER LYS THR TRP GLN ALA ASN LEU ARG LEU ILE SER LYS SEQRES 4 B 191 PHE ASP THR VAL GLU ASP PHE TRP ALA LEU TYR ASN HIS SEQRES 5 B 191 ILE GLN LEU SER SER ASN LEU MET PRO GLY CYS ASP TYR SEQRES 6 B 191 SER LEU PHE LYS ASP GLY ILE GLU PRO MET TRP GLU ASP SEQRES 7 B 191 GLU LYS ASN LYS ARG GLY GLY ARG TRP LEU ILE THR LEU SEQRES 8 B 191 ASN LYS GLN GLN ARG ARG SER ASP LEU ASP ARG PHE TRP SEQRES 9 B 191 LEU GLU THR LEU LEU CYS LEU ILE GLY GLU SER PHE ASP SEQRES 10 B 191 ASP TYR SER ASP ASP VAL CYS GLY ALA VAL VAL ASN VAL SEQRES 11 B 191 ARG ALA LYS GLY ASP LYS ILE ALA ILE TRP THR THR GLU SEQRES 12 B 191 CYS GLU ASN ARG ASP ALA VAL THR HIS ILE GLY ARG VAL SEQRES 13 B 191 TYR LYS GLU ARG LEU GLY LEU PRO PRO LYS ILE VAL ILE SEQRES 14 B 191 GLY TYR GLN SER HIS ALA ASP THR ALA THR LYS SER GLY SEQRES 15 B 191 SER THR THR LYS ASN ARG PHE VAL VAL HET OYE A 300 58 HET OYE B 300 35 HETNAM OYE BN7GPPPG MRNA 5' CAP ANALOG HETSYN OYE [[(2~{R},3~{S},4~{R},5~{R})-5-[2-AZANYL-6- HETSYN 2 OYE OXIDANYLIDENE-7-(PHENYLMETHYL)-3~{H}-PURIN-9-YL]-3,4- HETSYN 3 OYE BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] HETSYN 4 OYE [[(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-6- HETSYN 5 OYE OXIDANYLIDENE-1~{H}-PURIN-9-YL)-3,4-BIS(OXIDANYL) HETSYN 6 OYE OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] HYDROGEN HETSYN 7 OYE PHOSPHATE FORMUL 3 OYE 2(C27 H31 N10 O18 P3 2-) FORMUL 5 HOH *192(H2 O) HELIX 1 AA1 TRP A 56 ALA A 58 5 3 HELIX 2 AA2 VAL A 69 ASN A 77 1 9 HELIX 3 AA3 LEU A 81 LEU A 85 5 5 HELIX 4 AA4 GLN A 120 GLY A 139 1 20 HELIX 5 AA5 PHE A 142 ASP A 147 5 6 HELIX 6 AA6 ASN A 172 LEU A 187 1 16 HELIX 7 AA7 HIS A 200 THR A 205 1 6 HELIX 8 AA8 TRP B 56 ALA B 58 5 3 HELIX 9 AA9 VAL B 69 ASN B 77 1 9 HELIX 10 AB1 LEU B 81 LEU B 85 5 5 HELIX 11 AB2 GLN B 120 GLY B 139 1 20 HELIX 12 AB3 PHE B 142 ASP B 147 5 6 HELIX 13 AB4 ASN B 172 LEU B 187 1 16 SHEET 1 AA1 8 LEU A 60 THR A 68 0 SHEET 2 AA1 8 PRO A 38 PHE A 48 -1 N LEU A 39 O ASP A 67 SHEET 3 AA1 8 CYS A 89 LYS A 95 -1 O SER A 92 N TRP A 46 SHEET 4 AA1 8 VAL A 149 VAL A 156 -1 O VAL A 156 N CYS A 89 SHEET 5 AA1 8 LYS A 162 THR A 167 -1 O TRP A 166 N GLY A 151 SHEET 6 AA1 8 GLY A 111 THR A 116 -1 N GLY A 111 O THR A 167 SHEET 7 AA1 8 ILE A 195 SER A 199 -1 O GLY A 196 N LEU A 114 SHEET 8 AA1 8 PHE A 215 VAL A 217 -1 O PHE A 215 N TYR A 197 SHEET 1 AA2 7 LEU B 60 THR B 68 0 SHEET 2 AA2 7 PRO B 38 PHE B 48 -1 N LEU B 39 O ASP B 67 SHEET 3 AA2 7 ASP B 90 LYS B 95 -1 O SER B 92 N TRP B 46 SHEET 4 AA2 7 VAL B 149 ASN B 155 -1 O VAL B 154 N TYR B 91 SHEET 5 AA2 7 LYS B 162 THR B 167 -1 O ALA B 164 N VAL B 153 SHEET 6 AA2 7 GLY B 111 THR B 116 -1 N GLY B 111 O THR B 167 SHEET 7 AA2 7 GLY B 196 SER B 199 -1 O GLY B 196 N LEU B 114 SITE 1 AC1 22 PHE A 48 LYS A 52 LYS A 54 TRP A 56 SITE 2 AC1 22 ASN A 59 ARG A 61 MET A 101 TRP A 102 SITE 3 AC1 22 GLU A 103 ARG A 112 ARG A 157 TRP A 166 SITE 4 AC1 22 HOH A 409 HOH A 410 HOH A 415 HOH A 417 SITE 5 AC1 22 HOH A 424 HOH A 438 HOH A 449 HOH A 475 SITE 6 AC1 22 HOH A 481 HOH A 487 SITE 1 AC2 7 TRP B 56 MET B 101 TRP B 102 GLU B 103 SITE 2 AC2 7 ARG B 112 ARG B 157 TRP B 166 CRYST1 94.047 94.047 42.446 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010633 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010633 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023559 0.00000