HEADER RNA 08-APR-20 6YMC TITLE 26-MER STEM-LOOP RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (26-MER); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 4932 KEYWDS RNA, TETRA-LOOP EXPDTA X-RAY DIFFRACTION AUTHOR R.JANOWSKI,D.NIESSING REVDAT 1 20-APR-22 6YMC 0 JRNL AUTH A.NIEDNER,J.HENNIG,M.HOFWEBER,T.MONECKE,E.DAVYDOVA, JRNL AUTH 2 A.P.GERBER,I.ANOSOVA,M.MUELLER,R.HEYM,R.JANOWSKI, JRNL AUTH 3 J.-C.PAILLART,D.DORMANN,M.SATTLER,D.NIESSING JRNL TITL MULTIPLE INTRINSICALLY DISORDERED RNA-BINDING MOTIFS JRNL TITL 2 COOPERATE AS RNA-FOLDING CATALYST AND MEDIATE PHASE JRNL TITL 3 TRANSITION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 9048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 488 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 648 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 22 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1108 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.67000 REMARK 3 B22 (A**2) : 1.54000 REMARK 3 B33 (A**2) : -0.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.194 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.846 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1240 ; 0.013 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 508 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1930 ; 2.278 ; 1.276 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1236 ; 1.930 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 208 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 618 ; 0.027 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 270 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 26 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8903 30.1270 1.9292 REMARK 3 T TENSOR REMARK 3 T11: 0.1336 T22: 0.0770 REMARK 3 T33: 0.0581 T12: 0.0265 REMARK 3 T13: 0.0055 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.2535 L22: 0.1557 REMARK 3 L33: 0.1289 L12: -0.1146 REMARK 3 L13: 0.0218 L23: 0.0974 REMARK 3 S TENSOR REMARK 3 S11: -0.0309 S12: -0.0837 S13: -0.0808 REMARK 3 S21: -0.0882 S22: 0.0422 S23: 0.0128 REMARK 3 S31: -0.1282 S32: -0.0256 S33: -0.0113 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 26 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4897 37.0035 34.4727 REMARK 3 T TENSOR REMARK 3 T11: 0.0991 T22: 0.0869 REMARK 3 T33: 0.0302 T12: 0.0161 REMARK 3 T13: 0.0027 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 0.9676 L22: 0.3891 REMARK 3 L33: 0.6914 L12: 0.2610 REMARK 3 L13: 0.1984 L23: 0.5061 REMARK 3 S TENSOR REMARK 3 S11: 0.0915 S12: -0.0420 S13: -0.1327 REMARK 3 S21: -0.1464 S22: -0.0328 S23: -0.0673 REMARK 3 S31: -0.2252 S32: -0.0717 S33: -0.0587 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6YMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292107650. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9048 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NACL, 15 MM BACL2, 40 MM NA REMARK 280 CACODYLATE 7.0 44 % MPD, 12 MM SPERMINE TETRAHYDROCHLORIDE, PH REMARK 280 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 12.13500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.59000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.21500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.59000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 12.13500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.21500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A 12 O3' A A 13 P 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U A 3 O5' - P - OP2 ANGL. DEV. = -6.1 DEGREES REMARK 500 G A 6 O5' - C5' - C4' ANGL. DEV. = -5.4 DEGREES REMARK 500 U A 9 O5' - P - OP2 ANGL. DEV. = -8.3 DEGREES REMARK 500 A A 19 O5' - P - OP2 ANGL. DEV. = -7.2 DEGREES REMARK 500 G A 25 O5' - P - OP2 ANGL. DEV. = -5.7 DEGREES REMARK 500 U B 3 O5' - P - OP1 ANGL. DEV. = 16.3 DEGREES REMARK 500 U B 3 O5' - P - OP2 ANGL. DEV. = -8.3 DEGREES REMARK 500 C B 16 O5' - P - OP2 ANGL. DEV. = -6.8 DEGREES REMARK 500 A B 19 O5' - P - OP1 ANGL. DEV. = -6.3 DEGREES REMARK 500 C B 20 O5' - P - OP1 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A 101 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 3 O4 REMARK 620 2 G A 23 O6 91.5 REMARK 620 3 G A 24 O6 77.2 72.3 REMARK 620 4 G A 25 O6 83.6 143.3 71.1 REMARK 620 5 HOH A 204 O 153.5 89.7 78.0 79.7 REMARK 620 6 HOH A 231 O 123.6 144.7 115.2 55.0 60.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A 104 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 12 O6 REMARK 620 2 HOH A 207 O 71.4 REMARK 620 3 HOH A 225 O 62.6 132.9 REMARK 620 4 U B 9 OP1 108.7 146.4 52.0 REMARK 620 5 HOH B 223 O 66.5 104.8 66.3 105.7 REMARK 620 6 HOH B 224 O 144.3 126.0 98.4 74.4 78.4 REMARK 620 7 HOH B 249 O 136.9 119.5 89.7 37.9 134.1 66.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A 105 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 12 O6 REMARK 620 2 HOH A 212 O 81.4 REMARK 620 3 HOH A 222 O 72.7 143.3 REMARK 620 4 HOH A 224 O 128.9 99.4 78.3 REMARK 620 5 HOH B 210 O 64.2 62.4 123.8 157.7 REMARK 620 6 HOH B 223 O 61.1 124.9 63.1 135.4 65.2 REMARK 620 7 HOH B 228 O 137.5 73.4 142.3 89.2 73.9 107.3 REMARK 620 8 HOH B 241 O 130.8 139.6 76.5 79.2 105.9 70.9 66.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A 102 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 23 O6 REMARK 620 2 HOH A 233 O 84.1 REMARK 620 3 HOH A 238 O 80.2 74.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA A 103 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 25 O6 REMARK 620 2 HOH A 204 O 76.1 REMARK 620 3 HOH A 216 O 70.3 141.5 REMARK 620 4 HOH A 243 O 108.3 59.0 150.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA B 105 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 226 O REMARK 620 2 HOH A 234 O 98.0 REMARK 620 3 HOH A 240 O 68.3 64.0 REMARK 620 4 G B 12 O6 138.8 65.4 125.3 REMARK 620 5 HOH B 211 O 138.2 64.3 70.0 70.6 REMARK 620 6 HOH B 220 O 71.9 72.1 113.8 67.2 128.5 REMARK 620 7 HOH B 227 O 79.4 133.6 146.0 86.2 140.8 63.1 REMARK 620 8 HOH B 235 O 91.9 133.4 78.3 127.4 78.2 152.7 92.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA B 104 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 234 O REMARK 620 2 G B 11 O6 130.3 REMARK 620 3 G B 12 O6 66.8 68.1 REMARK 620 4 HOH B 211 O 63.5 82.8 70.8 REMARK 620 5 HOH B 216 O 117.9 88.7 144.8 80.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA B 101 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U B 5 O4 REMARK 620 2 U B 21 O4 93.0 REMARK 620 3 HOH B 236 O 133.7 52.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA B 102 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 7 O6 REMARK 620 2 HOH B 232 O 134.9 REMARK 620 3 HOH B 238 O 88.1 77.0 REMARK 620 4 HOH B 242 O 66.2 154.4 91.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA B 103 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 25 O6 REMARK 620 2 HOH B 201 O 81.3 REMARK 620 3 HOH B 225 O 73.0 150.0 REMARK 620 4 HOH B 240 O 79.5 127.8 62.8 REMARK 620 5 HOH B 246 O 69.8 69.9 113.7 57.9 REMARK 620 6 HOH B 248 O 124.2 89.2 118.0 63.9 55.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 105 DBREF 6YMC A 1 26 PDB 6YMC 6YMC 1 26 DBREF 6YMC B 1 26 PDB 6YMC 6YMC 1 26 SEQRES 1 A 26 U C U C U G G U U A G G A SEQRES 2 A 26 A A C U A A C U A G G G A SEQRES 1 B 26 U C U C U G G U U A G G A SEQRES 2 B 26 A A C U A A C U A G G G A HET BA A 101 1 HET BA A 102 1 HET BA A 103 1 HET BA A 104 1 HET BA A 105 1 HET BA B 101 1 HET BA B 102 1 HET BA B 103 1 HET BA B 104 1 HET BA B 105 1 HETNAM BA BARIUM ION FORMUL 3 BA 10(BA 2+) FORMUL 13 HOH *97(H2 O) LINK O4 U A 3 BA BA A 101 1555 1555 2.92 LINK O6 G A 12 BA BA A 104 1555 1555 2.78 LINK O6 G A 12 BA BA A 105 1555 1555 3.19 LINK O6 G A 23 BA BA A 101 1555 1555 2.80 LINK O6 G A 23 BA BA A 102 1555 1555 3.19 LINK O6 G A 24 BA BA A 101 1555 1555 2.78 LINK O6 G A 25 BA BA A 101 1555 1555 3.23 LINK O6 G A 25 BA BA A 103 1555 1555 3.29 LINK BA BA A 101 O HOH A 204 1555 1555 2.52 LINK BA BA A 101 O HOH A 231 1555 1555 2.98 LINK BA BA A 102 O HOH A 233 1555 1555 2.76 LINK BA BA A 102 O HOH A 238 1555 1555 2.60 LINK BA BA A 103 O HOH A 204 1555 1555 2.71 LINK BA BA A 103 O HOH A 216 1555 1555 3.23 LINK BA BA A 103 O HOH A 243 1555 1555 3.11 LINK BA BA A 104 O HOH A 207 1555 1555 2.88 LINK BA BA A 104 O HOH A 225 1555 1555 2.67 LINK BA BA A 104 OP1 U B 9 2665 1555 2.67 LINK BA BA A 104 O HOH B 223 1555 2664 2.86 LINK BA BA A 104 O HOH B 224 1555 2664 2.84 LINK BA BA A 104 O HOH B 249 1555 2664 2.92 LINK BA BA A 105 O HOH A 212 1555 1555 2.91 LINK BA BA A 105 O HOH A 222 1555 1555 2.63 LINK BA BA A 105 O HOH A 224 1555 1555 2.80 LINK BA BA A 105 O HOH B 210 1555 2664 2.69 LINK BA BA A 105 O HOH B 223 1555 2664 2.87 LINK BA BA A 105 O HOH B 228 1555 2664 2.81 LINK BA BA A 105 O HOH B 241 1555 2664 2.67 LINK O HOH A 226 BA BA B 105 2665 1555 2.82 LINK O HOH A 234 BA BA B 104 2665 1555 2.92 LINK O HOH A 234 BA BA B 105 2665 1555 2.93 LINK O HOH A 240 BA BA B 105 2665 1555 2.70 LINK O4 U B 5 BA BA B 101 1555 1555 2.86 LINK O6 G B 7 BA BA B 102 1555 1555 3.06 LINK O6 G B 11 BA BA B 104 1555 1555 2.90 LINK O6 G B 12 BA BA B 104 1555 1555 2.79 LINK O6 G B 12 BA BA B 105 1555 1555 2.88 LINK O4 U B 21 BA BA B 101 1555 1555 3.29 LINK O6 G B 25 BA BA B 103 1555 1555 3.15 LINK BA BA B 101 O HOH B 236 1555 1555 3.35 LINK BA BA B 102 O HOH B 232 1555 1555 2.90 LINK BA BA B 102 O HOH B 238 1555 1555 2.69 LINK BA BA B 102 O HOH B 242 1555 1555 3.03 LINK BA BA B 103 O HOH B 201 1555 1555 2.61 LINK BA BA B 103 O HOH B 225 1555 1555 2.78 LINK BA BA B 103 O HOH B 240 1555 1555 2.70 LINK BA BA B 103 O HOH B 246 1555 1555 2.91 LINK BA BA B 103 O HOH B 248 1555 1555 2.99 LINK BA BA B 104 O HOH B 211 1555 1555 2.84 LINK BA BA B 104 O HOH B 216 1555 1555 2.73 LINK BA BA B 105 O HOH B 211 1555 1555 2.75 LINK BA BA B 105 O HOH B 220 1555 1555 2.62 LINK BA BA B 105 O HOH B 227 1555 1555 2.93 LINK BA BA B 105 O HOH B 235 1555 1555 2.78 SITE 1 AC1 8 U A 3 G A 23 G A 24 G A 25 SITE 2 AC1 8 BA A 102 HOH A 204 HOH A 231 HOH A 238 SITE 1 AC2 4 G A 23 BA A 101 HOH A 233 HOH A 238 SITE 1 AC3 3 G A 25 HOH A 204 HOH A 231 SITE 1 AC4 7 G A 12 HOH A 207 HOH A 225 U B 9 SITE 2 AC4 7 HOH B 223 HOH B 224 HOH B 249 SITE 1 AC5 8 G A 12 HOH A 212 HOH A 222 HOH A 224 SITE 2 AC5 8 HOH B 210 HOH B 223 HOH B 228 HOH B 241 SITE 1 AC6 3 U B 5 U B 21 HOH B 202 SITE 1 AC7 5 G B 6 G B 7 HOH B 232 HOH B 238 SITE 2 AC7 5 HOH B 242 SITE 1 AC8 6 G B 25 HOH B 201 HOH B 225 HOH B 240 SITE 2 AC8 6 HOH B 246 HOH B 248 SITE 1 AC9 5 HOH A 234 G B 11 G B 12 HOH B 211 SITE 2 AC9 5 HOH B 216 SITE 1 AD1 8 HOH A 226 HOH A 234 HOH A 240 G B 12 SITE 2 AD1 8 HOH B 211 HOH B 220 HOH B 227 HOH B 235 CRYST1 24.270 52.430 107.180 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.041203 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009330 0.00000