HEADER SUGAR BINDING PROTEIN 14-APR-20 6YO3 TITLE LECA FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH A CATECHOL CAS NO. TITLE 2 67984-81-0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PA-I GALACTOPHILIC LECTIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PA-IL,GALACTOSE-BINDING LECTIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: LECA FROM PSEUDOMONAS AERUGINOSA WAS PRODUCED AS A COMPND 7 RECOMBINANT PROTEIN IN E. COLI SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 6 / 1C / PRS 101 / PAO1; SOURCE 7 GENE: LECA, PA1L, PA2570; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NON-CARBOHYDRATE GLYCOMIMETICS, PAINS, LECTIN, CATECHOLS, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.KUHAUDOMLARP,A.IMBERTY,A.TITZ REVDAT 3 24-JAN-24 6YO3 1 REMARK REVDAT 2 07-APR-21 6YO3 1 JRNL REVDAT 1 30-DEC-20 6YO3 0 JRNL AUTH S.KUHAUDOMLARP,E.SIEBS,E.SHANINA,J.TOPIN,I.JOACHIM, JRNL AUTH 2 P.DA SILVA FIGUEIREDO CELESTINO GOMES,A.VARROT,D.ROGNAN, JRNL AUTH 3 C.RADEMACHER,A.IMBERTY,A.TITZ JRNL TITL NON-CARBOHYDRATE GLYCOMIMETICS AS INHIBITORS OF JRNL TITL 2 CALCIUM(II)-BINDING LECTINS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 60 8104 2021 JRNL REFN ESSN 1521-3773 JRNL PMID 33314528 JRNL DOI 10.1002/ANIE.202013217 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 45394 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2432 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3307 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3597 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 353 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : -1.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.711 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3799 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3313 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5186 ; 1.565 ; 1.636 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7726 ; 1.430 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 7.021 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;32.517 ;25.088 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 517 ;11.173 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;16.296 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 492 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4402 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 746 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6YO3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292107658. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47830 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 45.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1OKO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG6000, 100 MM SODIUM ACETATE PH REMARK 280 4.5, 1 M LICL, 1% DMSO MIXED IN 1:1 RATIO WITH 10MG/ML OF LECA REMARK 280 IN WATER CONTAINING 100 UM CACL2. THE MIXTURE WAS DEPOSITED ONTO REMARK 280 DRIED CATECHOL COMPOUND FOR CO-CRYSTALLISATION, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 38.20653 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.31500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.01014 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 38.20653 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.31500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 64.01014 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 ASN B 88 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 78 -130.77 50.79 REMARK 500 ASN B 78 -129.05 62.56 REMARK 500 ASN B 88 141.69 -35.54 REMARK 500 ASN C 78 -136.00 60.23 REMARK 500 ARG C 83 62.50 38.89 REMARK 500 ASN D 78 -129.25 64.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 36 O REMARK 620 2 ASP A 100 OD2 106.8 REMARK 620 3 THR A 104 O 161.2 87.3 REMARK 620 4 ASN A 107 OD1 84.8 149.1 76.9 REMARK 620 5 ASN A 108 OD1 78.2 75.2 93.9 79.6 REMARK 620 6 P3K A 202 O1 89.9 132.7 89.4 74.2 152.0 REMARK 620 7 P3K A 202 O2 84.5 71.0 112.4 139.6 135.4 66.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 36 O REMARK 620 2 ASP B 100 OD2 108.1 REMARK 620 3 THR B 104 O 160.2 88.4 REMARK 620 4 ASN B 107 OD1 80.2 152.2 80.1 REMARK 620 5 ASN B 108 OD1 77.9 77.3 95.7 78.8 REMARK 620 6 EDO B 203 O1 82.5 69.4 114.4 138.4 133.4 REMARK 620 7 EDO B 203 O2 90.1 129.4 87.7 75.7 153.2 66.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR C 36 O REMARK 620 2 ASP C 100 OD2 105.6 REMARK 620 3 THR C 104 O 161.8 85.5 REMARK 620 4 ASN C 107 OD1 83.8 148.3 79.4 REMARK 620 5 ASN C 108 OD1 79.6 76.0 89.5 76.1 REMARK 620 6 P3K C 202 O1 89.8 133.9 92.6 74.9 150.1 REMARK 620 7 P3K C 202 O2 79.5 74.1 117.9 137.5 137.0 66.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR D 36 O REMARK 620 2 ASP D 100 OD2 107.3 REMARK 620 3 THR D 104 O 160.4 89.0 REMARK 620 4 ASN D 107 OD1 84.3 152.2 76.3 REMARK 620 5 ASN D 108 OD1 80.3 75.8 93.5 81.6 REMARK 620 6 EDO D 403 O2 78.4 72.1 118.0 135.7 133.6 REMARK 620 7 EDO D 403 O1 86.9 129.4 91.2 75.2 154.5 63.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P3K A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P3K C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 403 DBREF 6YO3 A 1 121 UNP Q05097 PA1L_PSEAE 2 122 DBREF 6YO3 B 1 121 UNP Q05097 PA1L_PSEAE 2 122 DBREF 6YO3 C 1 121 UNP Q05097 PA1L_PSEAE 2 122 DBREF 6YO3 D 1 121 UNP Q05097 PA1L_PSEAE 2 122 SEQRES 1 A 121 ALA TRP LYS GLY GLU VAL LEU ALA ASN ASN GLU ALA GLY SEQRES 2 A 121 GLN VAL THR SER ILE ILE TYR ASN PRO GLY ASP VAL ILE SEQRES 3 A 121 THR ILE VAL ALA ALA GLY TRP ALA SER TYR GLY PRO THR SEQRES 4 A 121 GLN LYS TRP GLY PRO GLN GLY ASP ARG GLU HIS PRO ASP SEQRES 5 A 121 GLN GLY LEU ILE CYS HIS ASP ALA PHE CYS GLY ALA LEU SEQRES 6 A 121 VAL MET LYS ILE GLY ASN SER GLY THR ILE PRO VAL ASN SEQRES 7 A 121 THR GLY LEU PHE ARG TRP VAL ALA PRO ASN ASN VAL GLN SEQRES 8 A 121 GLY ALA ILE THR LEU ILE TYR ASN ASP VAL PRO GLY THR SEQRES 9 A 121 TYR GLY ASN ASN SER GLY SER PHE SER VAL ASN ILE GLY SEQRES 10 A 121 LYS ASP GLN SER SEQRES 1 B 121 ALA TRP LYS GLY GLU VAL LEU ALA ASN ASN GLU ALA GLY SEQRES 2 B 121 GLN VAL THR SER ILE ILE TYR ASN PRO GLY ASP VAL ILE SEQRES 3 B 121 THR ILE VAL ALA ALA GLY TRP ALA SER TYR GLY PRO THR SEQRES 4 B 121 GLN LYS TRP GLY PRO GLN GLY ASP ARG GLU HIS PRO ASP SEQRES 5 B 121 GLN GLY LEU ILE CYS HIS ASP ALA PHE CYS GLY ALA LEU SEQRES 6 B 121 VAL MET LYS ILE GLY ASN SER GLY THR ILE PRO VAL ASN SEQRES 7 B 121 THR GLY LEU PHE ARG TRP VAL ALA PRO ASN ASN VAL GLN SEQRES 8 B 121 GLY ALA ILE THR LEU ILE TYR ASN ASP VAL PRO GLY THR SEQRES 9 B 121 TYR GLY ASN ASN SER GLY SER PHE SER VAL ASN ILE GLY SEQRES 10 B 121 LYS ASP GLN SER SEQRES 1 C 121 ALA TRP LYS GLY GLU VAL LEU ALA ASN ASN GLU ALA GLY SEQRES 2 C 121 GLN VAL THR SER ILE ILE TYR ASN PRO GLY ASP VAL ILE SEQRES 3 C 121 THR ILE VAL ALA ALA GLY TRP ALA SER TYR GLY PRO THR SEQRES 4 C 121 GLN LYS TRP GLY PRO GLN GLY ASP ARG GLU HIS PRO ASP SEQRES 5 C 121 GLN GLY LEU ILE CYS HIS ASP ALA PHE CYS GLY ALA LEU SEQRES 6 C 121 VAL MET LYS ILE GLY ASN SER GLY THR ILE PRO VAL ASN SEQRES 7 C 121 THR GLY LEU PHE ARG TRP VAL ALA PRO ASN ASN VAL GLN SEQRES 8 C 121 GLY ALA ILE THR LEU ILE TYR ASN ASP VAL PRO GLY THR SEQRES 9 C 121 TYR GLY ASN ASN SER GLY SER PHE SER VAL ASN ILE GLY SEQRES 10 C 121 LYS ASP GLN SER SEQRES 1 D 121 ALA TRP LYS GLY GLU VAL LEU ALA ASN ASN GLU ALA GLY SEQRES 2 D 121 GLN VAL THR SER ILE ILE TYR ASN PRO GLY ASP VAL ILE SEQRES 3 D 121 THR ILE VAL ALA ALA GLY TRP ALA SER TYR GLY PRO THR SEQRES 4 D 121 GLN LYS TRP GLY PRO GLN GLY ASP ARG GLU HIS PRO ASP SEQRES 5 D 121 GLN GLY LEU ILE CYS HIS ASP ALA PHE CYS GLY ALA LEU SEQRES 6 D 121 VAL MET LYS ILE GLY ASN SER GLY THR ILE PRO VAL ASN SEQRES 7 D 121 THR GLY LEU PHE ARG TRP VAL ALA PRO ASN ASN VAL GLN SEQRES 8 D 121 GLY ALA ILE THR LEU ILE TYR ASN ASP VAL PRO GLY THR SEQRES 9 D 121 TYR GLY ASN ASN SER GLY SER PHE SER VAL ASN ILE GLY SEQRES 10 D 121 LYS ASP GLN SER HET CA A 201 1 HET P3K A 202 10 HET CA B 201 1 HET P6G B 202 19 HET EDO B 203 4 HET CA C 201 1 HET P3K C 202 10 HET PG4 C 203 13 HET PGE D 401 10 HET CA D 402 1 HET EDO D 403 4 HETNAM CA CALCIUM ION HETNAM P3K 2,3-BIS(OXIDANYL)BENZENECARBONITRILE HETNAM P6G HEXAETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 HETSYN EDO ETHYLENE GLYCOL FORMUL 5 CA 4(CA 2+) FORMUL 6 P3K 2(C7 H5 N O2) FORMUL 8 P6G C12 H26 O7 FORMUL 9 EDO 2(C2 H6 O2) FORMUL 12 PG4 C8 H18 O5 FORMUL 13 PGE C6 H14 O4 FORMUL 16 HOH *353(H2 O) HELIX 1 AA1 THR A 104 ASN A 108 5 5 HELIX 2 AA2 THR B 104 ASN B 108 5 5 HELIX 3 AA3 ALA C 86 VAL C 90 5 5 HELIX 4 AA4 THR C 104 ASN C 108 5 5 HELIX 5 AA5 THR D 104 ASN D 108 5 5 SHEET 1 AA1 4 TRP A 2 LEU A 7 0 SHEET 2 AA1 4 SER A 109 LYS A 118 -1 O VAL A 114 N GLY A 4 SHEET 3 AA1 4 ILE A 26 SER A 35 -1 N ALA A 31 O SER A 113 SHEET 4 AA1 4 GLY A 80 TRP A 84 -1 O TRP A 84 N ILE A 26 SHEET 1 AA2 4 GLN A 14 TYR A 20 0 SHEET 2 AA2 4 GLY A 92 TYR A 98 -1 O LEU A 96 N GLN A 14 SHEET 3 AA2 4 CYS A 62 ILE A 69 -1 N VAL A 66 O ILE A 97 SHEET 4 AA2 4 GLN A 45 ASP A 47 -1 N ASP A 47 O CYS A 62 SHEET 1 AA3 4 GLN A 14 TYR A 20 0 SHEET 2 AA3 4 GLY A 92 TYR A 98 -1 O LEU A 96 N GLN A 14 SHEET 3 AA3 4 CYS A 62 ILE A 69 -1 N VAL A 66 O ILE A 97 SHEET 4 AA3 4 ILE A 75 PRO A 76 -1 O ILE A 75 N MET A 67 SHEET 1 AA4 4 TRP B 2 LEU B 7 0 SHEET 2 AA4 4 SER B 109 LYS B 118 -1 O VAL B 114 N GLY B 4 SHEET 3 AA4 4 ILE B 26 SER B 35 -1 N SER B 35 O SER B 109 SHEET 4 AA4 4 GLY B 80 TRP B 84 -1 O TRP B 84 N ILE B 26 SHEET 1 AA5 4 GLN B 14 TYR B 20 0 SHEET 2 AA5 4 GLY B 92 TYR B 98 -1 O ILE B 94 N THR B 16 SHEET 3 AA5 4 CYS B 62 ILE B 69 -1 N LYS B 68 O THR B 95 SHEET 4 AA5 4 GLN B 45 ASP B 47 -1 N ASP B 47 O CYS B 62 SHEET 1 AA6 4 GLN B 14 TYR B 20 0 SHEET 2 AA6 4 GLY B 92 TYR B 98 -1 O ILE B 94 N THR B 16 SHEET 3 AA6 4 CYS B 62 ILE B 69 -1 N LYS B 68 O THR B 95 SHEET 4 AA6 4 ILE B 75 PRO B 76 -1 O ILE B 75 N MET B 67 SHEET 1 AA7 3 SER B 121 SER B 121 0 SHEET 2 AA7 3 SER C 109 LYS C 118 -1 O LYS C 118 N SER B 121 SHEET 3 AA7 3 TRP C 2 LEU C 7 -1 N TRP C 2 O ILE C 116 SHEET 1 AA8 4 SER B 121 SER B 121 0 SHEET 2 AA8 4 SER C 109 LYS C 118 -1 O LYS C 118 N SER B 121 SHEET 3 AA8 4 ILE C 26 SER C 35 -1 N SER C 35 O SER C 109 SHEET 4 AA8 4 GLY C 80 TRP C 84 -1 O TRP C 84 N ILE C 26 SHEET 1 AA9 4 GLN C 14 TYR C 20 0 SHEET 2 AA9 4 GLY C 92 TYR C 98 -1 O ILE C 94 N THR C 16 SHEET 3 AA9 4 LEU C 65 ILE C 69 -1 N VAL C 66 O ILE C 97 SHEET 4 AA9 4 ILE C 75 PRO C 76 -1 O ILE C 75 N MET C 67 SHEET 1 AB1 4 TRP D 2 LEU D 7 0 SHEET 2 AB1 4 SER D 109 LYS D 118 -1 O VAL D 114 N GLY D 4 SHEET 3 AB1 4 ILE D 26 SER D 35 -1 N SER D 35 O SER D 109 SHEET 4 AB1 4 GLY D 80 TRP D 84 -1 O TRP D 84 N ILE D 26 SHEET 1 AB2 4 GLN D 14 TYR D 20 0 SHEET 2 AB2 4 GLY D 92 TYR D 98 -1 O LEU D 96 N GLN D 14 SHEET 3 AB2 4 CYS D 62 ILE D 69 -1 N VAL D 66 O ILE D 97 SHEET 4 AB2 4 GLN D 45 ASP D 47 -1 N ASP D 47 O CYS D 62 SHEET 1 AB3 4 GLN D 14 TYR D 20 0 SHEET 2 AB3 4 GLY D 92 TYR D 98 -1 O LEU D 96 N GLN D 14 SHEET 3 AB3 4 CYS D 62 ILE D 69 -1 N VAL D 66 O ILE D 97 SHEET 4 AB3 4 ILE D 75 PRO D 76 -1 O ILE D 75 N MET D 67 LINK O TYR A 36 CA CA A 201 1555 1555 2.27 LINK OD2 ASP A 100 CA CA A 201 1555 1555 2.53 LINK O THR A 104 CA CA A 201 1555 1555 2.25 LINK OD1 ASN A 107 CA CA A 201 1555 1555 2.37 LINK OD1 ASN A 108 CA CA A 201 1555 1555 2.41 LINK CA CA A 201 O1 P3K A 202 1555 1555 2.34 LINK CA CA A 201 O2 P3K A 202 1555 1555 2.46 LINK O TYR B 36 CA CA B 201 1555 1555 2.36 LINK OD2 ASP B 100 CA CA B 201 1555 1555 2.51 LINK O THR B 104 CA CA B 201 1555 1555 2.31 LINK OD1 ASN B 107 CA CA B 201 1555 1555 2.44 LINK OD1 ASN B 108 CA CA B 201 1555 1555 2.32 LINK CA CA B 201 O1 EDO B 203 1555 1555 2.44 LINK CA CA B 201 O2 EDO B 203 1555 1555 2.40 LINK O TYR C 36 CA CA C 201 1555 1555 2.27 LINK OD2 ASP C 100 CA CA C 201 1555 1555 2.46 LINK O THR C 104 CA CA C 201 1555 1555 2.26 LINK OD1 ASN C 107 CA CA C 201 1555 1555 2.43 LINK OD1 ASN C 108 CA CA C 201 1555 1555 2.38 LINK CA CA C 201 O1 P3K C 202 1555 1555 2.33 LINK CA CA C 201 O2 P3K C 202 1555 1555 2.43 LINK O TYR D 36 CA CA D 402 1555 1555 2.36 LINK OD2 ASP D 100 CA CA D 402 1555 1555 2.51 LINK O THR D 104 CA CA D 402 1555 1555 2.34 LINK OD1 ASN D 107 CA CA D 402 1555 1555 2.40 LINK OD1 ASN D 108 CA CA D 402 1555 1555 2.39 LINK CA CA D 402 O2 EDO D 403 1555 1555 2.58 LINK CA CA D 402 O1 EDO D 403 1555 1555 2.45 SITE 1 AC1 6 TYR A 36 ASP A 100 THR A 104 ASN A 107 SITE 2 AC1 6 ASN A 108 P3K A 202 SITE 1 AC2 11 TYR A 36 HIS A 50 CYS A 62 ASP A 100 SITE 2 AC2 11 VAL A 101 THR A 104 ASN A 107 CA A 201 SITE 3 AC2 11 HOH A 330 PRO C 102 HOH C 327 SITE 1 AC3 6 TYR B 36 ASP B 100 THR B 104 ASN B 107 SITE 2 AC3 6 ASN B 108 EDO B 203 SITE 1 AC4 8 ALA B 12 LYS B 68 GLY B 70 ASN B 71 SITE 2 AC4 8 ILE B 97 HOH B 361 HOH B 364 LYS C 3 SITE 1 AC5 6 TYR B 36 ASP B 100 THR B 104 ASN B 107 SITE 2 AC5 6 CA B 201 HOH B 349 SITE 1 AC6 6 TYR C 36 ASP C 100 THR C 104 ASN C 107 SITE 2 AC6 6 ASN C 108 P3K C 202 SITE 1 AC7 11 PRO A 102 TYR C 36 HIS C 50 CYS C 62 SITE 2 AC7 11 ASP C 100 VAL C 101 THR C 104 ASN C 107 SITE 3 AC7 11 CA C 201 HOH C 326 HOH C 329 SITE 1 AC8 5 ASP B 52 HIS C 58 ASP C 59 PHE C 61 SITE 2 AC8 5 HOH C 391 SITE 1 AC9 5 ALA A 12 LYS A 68 ILE A 97 HOH A 309 SITE 2 AC9 5 HOH D 524 SITE 1 AD1 6 TYR D 36 ASP D 100 THR D 104 ASN D 107 SITE 2 AD1 6 ASN D 108 EDO D 403 SITE 1 AD2 5 TYR D 36 ASP D 100 THR D 104 ASN D 107 SITE 2 AD2 5 CA D 402 CRYST1 88.943 48.630 128.632 90.00 95.59 90.00 I 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011243 0.000000 0.001100 0.00000 SCALE2 0.000000 0.020563 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007811 0.00000