HEADER SUGAR BINDING PROTEIN 14-APR-20 6YOH TITLE LECA FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH A CATECHOL CAS NO. TITLE 2 61445-50-9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PA-I GALACTOPHILIC LECTIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PA-IL,GALACTOSE-BINDING LECTIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 GENE: LECA, PA1L, PA2570; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NON-CARBOHYDRATE GLYCOMIMETICS, PAINS, LECTIN, CATECHOLS, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.KUHAUDOMLARP,A.IMBERTY,A.TITZ,A.VARROT REVDAT 2 24-JAN-24 6YOH 1 REMARK REVDAT 1 24-FEB-21 6YOH 0 JRNL AUTH S.KUHAUDOMLARP,E.SIEBS,E.SHANINA,J.TOPIN,I.JOACHIM, JRNL AUTH 2 P.DA SILVA FIGUEIREDO CELESTINO GOMES,A.VARROT,D.ROGNAN, JRNL AUTH 3 C.RADEMACHER,A.IMBERTY,A.TITZ JRNL TITL NON-CARBOHYDRATE GLYCOMIMETICS AS INHIBITORS OF JRNL TITL 2 CALCIUM(II)-BINDING LECTINS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. 2020 JRNL REFN ESSN 1521-3773 JRNL PMID 33314528 JRNL DOI 10.1002/ANIE.202013217 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 33319 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1776 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2380 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3578 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 244 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : 0.71000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.170 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.076 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3772 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3244 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5174 ; 1.545 ; 1.633 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7548 ; 1.459 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 492 ; 7.037 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;31.501 ;24.970 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 511 ;10.736 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;20.038 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 490 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4430 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 758 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 121 B 1 121 3687 0.070 0.050 REMARK 3 2 A 1 121 C 1 121 3646 0.090 0.050 REMARK 3 3 A 1 121 D 1 121 3602 0.090 0.050 REMARK 3 4 B 1 121 C 1 121 3639 0.090 0.050 REMARK 3 5 B 1 121 D 1 121 3580 0.090 0.050 REMARK 3 6 C 1 121 D 1 121 3598 0.090 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6YOH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292108002. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35137 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 48.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.10 REMARK 200 R MERGE FOR SHELL (I) : 0.46900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1OKO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG6000, 100 MM SODIUM ACETATE PH REMARK 280 4.5, 1 M LICL, 1% DMSO MIXED IN 1:1 RATIO WITH 10MG/ML OF LECA REMARK 280 IN WATER CONTAINING 100 UM CACL2. THE MIXTURE WAS DEPOSITED ONTO REMARK 280 DRIED CATECHOL COMPOUND FOR CO-CRYSTALLISATION, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 24.11100 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.57400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 24.11100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.57400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 324 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 331 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 331 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 352 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 71 CG OD1 ND2 REMARK 470 PRO B 51 CG CD REMARK 470 ASN B 71 CG OD1 ND2 REMARK 470 GLN C 14 CG CD OE1 NE2 REMARK 470 LYS D 3 CG CD CE NZ REMARK 470 GLN D 14 CG CD OE1 NE2 REMARK 470 ASN D 71 CG OD1 ND2 REMARK 470 ASN D 89 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 78 -131.23 57.64 REMARK 500 ASN B 78 -132.63 56.88 REMARK 500 ASN C 78 -133.16 57.94 REMARK 500 PRO C 87 153.18 -49.94 REMARK 500 ASN D 78 -131.23 56.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 36 O REMARK 620 2 ASP A 100 OD2 104.6 REMARK 620 3 THR A 104 O 164.8 87.4 REMARK 620 4 ASN A 107 OD1 89.9 147.7 75.1 REMARK 620 5 ASN A 108 OD1 80.1 77.0 94.0 77.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 36 O REMARK 620 2 ASP B 100 OD2 106.3 REMARK 620 3 THR B 104 O 159.9 86.9 REMARK 620 4 ASN B 107 OD1 89.2 144.3 71.7 REMARK 620 5 ASN B 108 OD1 79.2 75.5 89.9 76.2 REMARK 620 6 HOH B 308 O 87.7 69.4 111.4 144.7 137.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR C 36 O REMARK 620 2 ASP C 100 OD2 104.0 REMARK 620 3 THR C 104 O 132.4 88.5 REMARK 620 4 THR C 104 OG1 166.5 72.5 61.0 REMARK 620 5 ASN C 107 OD1 75.2 125.6 60.9 117.7 REMARK 620 6 ASN C 108 OD1 65.9 69.4 76.8 122.8 60.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR D 36 O REMARK 620 2 ASP D 100 OD2 103.6 REMARK 620 3 THR D 104 O 156.9 92.9 REMARK 620 4 ASN D 107 OD1 86.1 147.5 71.5 REMARK 620 5 ASN D 108 OD1 76.0 78.2 91.8 74.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P4H A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P4H B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P4H D 202 DBREF 6YOH A 1 121 UNP Q05097 PA1L_PSEAE 2 122 DBREF 6YOH B 1 121 UNP Q05097 PA1L_PSEAE 2 122 DBREF 6YOH C 1 121 UNP Q05097 PA1L_PSEAE 2 122 DBREF 6YOH D 1 121 UNP Q05097 PA1L_PSEAE 2 122 SEQRES 1 A 121 ALA TRP LYS GLY GLU VAL LEU ALA ASN ASN GLU ALA GLY SEQRES 2 A 121 GLN VAL THR SER ILE ILE TYR ASN PRO GLY ASP VAL ILE SEQRES 3 A 121 THR ILE VAL ALA ALA GLY TRP ALA SER TYR GLY PRO THR SEQRES 4 A 121 GLN LYS TRP GLY PRO GLN GLY ASP ARG GLU HIS PRO ASP SEQRES 5 A 121 GLN GLY LEU ILE CYS HIS ASP ALA PHE CYS GLY ALA LEU SEQRES 6 A 121 VAL MET LYS ILE GLY ASN SER GLY THR ILE PRO VAL ASN SEQRES 7 A 121 THR GLY LEU PHE ARG TRP VAL ALA PRO ASN ASN VAL GLN SEQRES 8 A 121 GLY ALA ILE THR LEU ILE TYR ASN ASP VAL PRO GLY THR SEQRES 9 A 121 TYR GLY ASN ASN SER GLY SER PHE SER VAL ASN ILE GLY SEQRES 10 A 121 LYS ASP GLN SER SEQRES 1 B 121 ALA TRP LYS GLY GLU VAL LEU ALA ASN ASN GLU ALA GLY SEQRES 2 B 121 GLN VAL THR SER ILE ILE TYR ASN PRO GLY ASP VAL ILE SEQRES 3 B 121 THR ILE VAL ALA ALA GLY TRP ALA SER TYR GLY PRO THR SEQRES 4 B 121 GLN LYS TRP GLY PRO GLN GLY ASP ARG GLU HIS PRO ASP SEQRES 5 B 121 GLN GLY LEU ILE CYS HIS ASP ALA PHE CYS GLY ALA LEU SEQRES 6 B 121 VAL MET LYS ILE GLY ASN SER GLY THR ILE PRO VAL ASN SEQRES 7 B 121 THR GLY LEU PHE ARG TRP VAL ALA PRO ASN ASN VAL GLN SEQRES 8 B 121 GLY ALA ILE THR LEU ILE TYR ASN ASP VAL PRO GLY THR SEQRES 9 B 121 TYR GLY ASN ASN SER GLY SER PHE SER VAL ASN ILE GLY SEQRES 10 B 121 LYS ASP GLN SER SEQRES 1 C 121 ALA TRP LYS GLY GLU VAL LEU ALA ASN ASN GLU ALA GLY SEQRES 2 C 121 GLN VAL THR SER ILE ILE TYR ASN PRO GLY ASP VAL ILE SEQRES 3 C 121 THR ILE VAL ALA ALA GLY TRP ALA SER TYR GLY PRO THR SEQRES 4 C 121 GLN LYS TRP GLY PRO GLN GLY ASP ARG GLU HIS PRO ASP SEQRES 5 C 121 GLN GLY LEU ILE CYS HIS ASP ALA PHE CYS GLY ALA LEU SEQRES 6 C 121 VAL MET LYS ILE GLY ASN SER GLY THR ILE PRO VAL ASN SEQRES 7 C 121 THR GLY LEU PHE ARG TRP VAL ALA PRO ASN ASN VAL GLN SEQRES 8 C 121 GLY ALA ILE THR LEU ILE TYR ASN ASP VAL PRO GLY THR SEQRES 9 C 121 TYR GLY ASN ASN SER GLY SER PHE SER VAL ASN ILE GLY SEQRES 10 C 121 LYS ASP GLN SER SEQRES 1 D 121 ALA TRP LYS GLY GLU VAL LEU ALA ASN ASN GLU ALA GLY SEQRES 2 D 121 GLN VAL THR SER ILE ILE TYR ASN PRO GLY ASP VAL ILE SEQRES 3 D 121 THR ILE VAL ALA ALA GLY TRP ALA SER TYR GLY PRO THR SEQRES 4 D 121 GLN LYS TRP GLY PRO GLN GLY ASP ARG GLU HIS PRO ASP SEQRES 5 D 121 GLN GLY LEU ILE CYS HIS ASP ALA PHE CYS GLY ALA LEU SEQRES 6 D 121 VAL MET LYS ILE GLY ASN SER GLY THR ILE PRO VAL ASN SEQRES 7 D 121 THR GLY LEU PHE ARG TRP VAL ALA PRO ASN ASN VAL GLN SEQRES 8 D 121 GLY ALA ILE THR LEU ILE TYR ASN ASP VAL PRO GLY THR SEQRES 9 D 121 TYR GLY ASN ASN SER GLY SER PHE SER VAL ASN ILE GLY SEQRES 10 D 121 LYS ASP GLN SER HET CA A 201 1 HET P4H A 202 18 HET CA B 201 1 HET P4H B 202 18 HET CA C 201 1 HET CA D 201 1 HET P4H D 202 18 HETNAM CA CALCIUM ION HETNAM P4H [2,4-BIS(OXIDANYL)PHENYL]-[3,4-BIS(OXIDANYL) HETNAM 2 P4H PHENYL]METHANONE FORMUL 5 CA 4(CA 2+) FORMUL 6 P4H 3(C13 H10 O5) FORMUL 12 HOH *244(H2 O) SHEET 1 AA1 4 TRP A 2 LEU A 7 0 SHEET 2 AA1 4 SER A 109 LYS A 118 -1 O VAL A 114 N GLY A 4 SHEET 3 AA1 4 ILE A 26 SER A 35 -1 N SER A 35 O SER A 109 SHEET 4 AA1 4 GLY A 80 TRP A 84 -1 O TRP A 84 N ILE A 26 SHEET 1 AA2 4 GLN A 14 TYR A 20 0 SHEET 2 AA2 4 GLY A 92 TYR A 98 -1 O ILE A 94 N THR A 16 SHEET 3 AA2 4 LEU A 65 ILE A 69 -1 N VAL A 66 O ILE A 97 SHEET 4 AA2 4 ILE A 75 PRO A 76 -1 O ILE A 75 N MET A 67 SHEET 1 AA3 4 TRP B 2 LEU B 7 0 SHEET 2 AA3 4 SER B 109 LYS B 118 -1 O VAL B 114 N GLY B 4 SHEET 3 AA3 4 ILE B 26 SER B 35 -1 N SER B 35 O SER B 109 SHEET 4 AA3 4 GLY B 80 TRP B 84 -1 O TRP B 84 N ILE B 26 SHEET 1 AA4 4 GLN B 14 TYR B 20 0 SHEET 2 AA4 4 GLY B 92 TYR B 98 -1 O ILE B 94 N THR B 16 SHEET 3 AA4 4 LEU B 65 ILE B 69 -1 N VAL B 66 O ILE B 97 SHEET 4 AA4 4 ILE B 75 PRO B 76 -1 O ILE B 75 N MET B 67 SHEET 1 AA5 4 TRP C 2 LEU C 7 0 SHEET 2 AA5 4 SER C 109 LYS C 118 -1 O VAL C 114 N GLY C 4 SHEET 3 AA5 4 ILE C 26 SER C 35 -1 N SER C 35 O SER C 109 SHEET 4 AA5 4 GLY C 80 TRP C 84 -1 O TRP C 84 N ILE C 26 SHEET 1 AA6 4 GLN C 14 TYR C 20 0 SHEET 2 AA6 4 GLY C 92 TYR C 98 -1 O GLY C 92 N TYR C 20 SHEET 3 AA6 4 LEU C 65 ILE C 69 -1 N VAL C 66 O ILE C 97 SHEET 4 AA6 4 ILE C 75 PRO C 76 -1 O ILE C 75 N MET C 67 SHEET 1 AA7 4 TRP D 2 LEU D 7 0 SHEET 2 AA7 4 SER D 109 LYS D 118 -1 O VAL D 114 N GLY D 4 SHEET 3 AA7 4 ILE D 26 SER D 35 -1 N SER D 35 O SER D 109 SHEET 4 AA7 4 GLY D 80 TRP D 84 -1 O TRP D 84 N ILE D 26 SHEET 1 AA8 4 GLN D 14 TYR D 20 0 SHEET 2 AA8 4 GLY D 92 TYR D 98 -1 O ILE D 94 N THR D 16 SHEET 3 AA8 4 LEU D 65 ILE D 69 -1 N VAL D 66 O ILE D 97 SHEET 4 AA8 4 ILE D 75 PRO D 76 -1 O ILE D 75 N MET D 67 LINK O TYR A 36 CA CA A 201 1555 1555 2.18 LINK OD2 ASP A 100 CA CA A 201 1555 1555 2.52 LINK O THR A 104 CA CA A 201 1555 1555 2.22 LINK OD1 ASN A 107 CA CA A 201 1555 1555 2.39 LINK OD1 ASN A 108 CA CA A 201 1555 1555 2.38 LINK O TYR B 36 CA CA B 201 1555 1555 2.17 LINK OD2 ASP B 100 CA CA B 201 1555 1555 2.49 LINK O THR B 104 CA CA B 201 1555 1555 2.29 LINK OD1 ASN B 107 CA CA B 201 1555 1555 2.43 LINK OD1 ASN B 108 CA CA B 201 1555 1555 2.43 LINK CA CA B 201 O HOH B 308 1555 1555 2.20 LINK O TYR C 36 CA CA C 201 1555 1555 2.36 LINK OD2 ASP C 100 CA CA C 201 1555 1555 2.30 LINK O THR C 104 CA CA C 201 1555 1555 2.46 LINK OG1 THR C 104 CA CA C 201 1555 1555 3.17 LINK OD1 ASN C 107 CA CA C 201 1555 1555 2.93 LINK OD1 ASN C 108 CA CA C 201 1555 1555 2.96 LINK O TYR D 36 CA CA D 201 1555 1555 2.27 LINK OD2 ASP D 100 CA CA D 201 1555 1555 2.38 LINK O THR D 104 CA CA D 201 1555 1555 2.21 LINK OD1 ASN D 107 CA CA D 201 1555 1555 2.51 LINK OD1 ASN D 108 CA CA D 201 1555 1555 2.48 SITE 1 AC1 5 TYR A 36 ASP A 100 THR A 104 ASN A 107 SITE 2 AC1 5 ASN A 108 SITE 1 AC2 9 ASP A 59 GLY A 73 ILE A 75 PRO A 76 SITE 2 AC2 9 PRO A 87 ASN A 89 VAL A 90 PRO B 87 SITE 3 AC2 9 ASN B 89 SITE 1 AC3 6 TYR B 36 ASP B 100 THR B 104 ASN B 107 SITE 2 AC3 6 ASN B 108 HOH B 308 SITE 1 AC4 9 PRO A 87 ASN A 89 ASP B 59 SER B 72 SITE 2 AC4 9 GLY B 73 PRO B 76 PRO B 87 VAL B 90 SITE 3 AC4 9 HOH B 304 SITE 1 AC5 5 TYR C 36 ASP C 100 THR C 104 ASN C 107 SITE 2 AC5 5 ASN C 108 SITE 1 AC6 5 TYR D 36 ASP D 100 THR D 104 ASN D 107 SITE 2 AC6 5 ASN D 108 SITE 1 AC7 6 ASP D 59 THR D 74 PRO D 76 TRP D 84 SITE 2 AC7 6 VAL D 85 PRO D 87 CRYST1 48.222 76.066 107.148 90.00 90.00 90.00 P 21 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020737 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013146 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009333 0.00000