HEADER VIRAL PROTEIN 15-APR-20 6YP5 TITLE SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION DOMAIN OF RESPIRATORY TITLE 2 SYNCYTIAL VIRUS PHOSPHOPROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOPROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: N-TERMINAL RESIDUES GLY119 TO SER126 ARE LEFTOVERS COMPND 6 FROM THE EXPRESSION TAG. RESIDUES GLY119 TO SER124 WERE NOT INCLUDED COMPND 7 IN THE STRUCTURE CALCULATION. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RESPIRATORY SYNCYTIAL VIRUS; SOURCE 3 ORGANISM_TAXID: 12814; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PGEX-P(127-163) KEYWDS PHOSPHOPROTEIN, RNA DEPENDENT RNA POLYMERASE COFACTOR, TETRAMER, KEYWDS 2 COILED-COIL, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.CARDONE,F.BONTEMS,B.BARDIAUX,C.SIZUN REVDAT 4 14-JUN-23 6YP5 1 REMARK REVDAT 3 24-NOV-21 6YP5 1 JRNL REVDAT 2 17-NOV-21 6YP5 1 JRNL REVDAT 1 28-APR-21 6YP5 0 JRNL AUTH C.CARDONE,C.M.CASEAU,B.BARDIAUX,A.THUREAUX,M.GALLOUX, JRNL AUTH 2 M.BAJOREK,J.F.ELEOUET,M.LITAUDON,F.BONTEMS,C.SIZUN JRNL TITL A STRUCTURAL AND DYNAMIC ANALYSIS OF THE PARTIALLY JRNL TITL 2 DISORDERED POLYMERASE-BINDING DOMAIN IN RSV PHOSPHOPROTEIN. JRNL REF BIOMOLECULES V. 11 2021 JRNL REFN ESSN 2218-273X JRNL PMID 34439894 JRNL DOI 10.3390/BIOM11081225 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YP5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292107993. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 133 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 600 UM [U-13C; U-15N] REMARK 210 PHOSPHOPROTEIN(127-163), 20 MM REMARK 210 SODIUM PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 93% H2O/7% D2O; 600 UM REMARK 210 [U-13C; U-15N] REMARK 210 PHOSPHOPROTEIN(127-163), 20 MM REMARK 210 SODIUM PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 100% D2O; 300 UM [U- REMARK 210 13C; U-15N] PHOSPHOPROTEIN(127- REMARK 210 163), 300 UM PHOSPHOPROTEIN(127- REMARK 210 163), 20 MM SODIUM PHOSPHATE, REMARK 210 100 MM SODIUM CHLORIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D HNCACB; 3D HNCO; 3D REMARK 210 HN(COCA)CB; 3D HBHA(CO)NH; 3D REMARK 210 CBCA(CO)NH; 3D HCCH-TOCSY; 2D 1H- REMARK 210 13C HSQC; 3D 1H-15N NOESY-HSQC; REMARK 210 1D 1H; 3D 1H-13C NOESY; 1H-13C REMARK 210 NOESY-HSQC WITH 13C/15N FILTER REMARK 210 IN F1 REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 2.3, CCPNMR ANALYSIS 2.4, REMARK 210 TALOS-N 4.21 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 119 REMARK 465 SER A 120 REMARK 465 GLY A 121 REMARK 465 SER A 122 REMARK 465 GLY A 123 REMARK 465 SER A 124 REMARK 465 GLY B 119 REMARK 465 SER B 120 REMARK 465 GLY B 121 REMARK 465 SER B 122 REMARK 465 GLY B 123 REMARK 465 SER B 124 REMARK 465 GLY C 119 REMARK 465 SER C 120 REMARK 465 GLY C 121 REMARK 465 SER C 122 REMARK 465 GLY C 123 REMARK 465 SER C 124 REMARK 465 GLY D 119 REMARK 465 SER D 120 REMARK 465 GLY D 121 REMARK 465 SER D 122 REMARK 465 GLY D 123 REMARK 465 SER D 124 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 149 H VAL A 153 1.51 REMARK 500 O LEU C 149 H VAL C 153 1.51 REMARK 500 O LEU B 149 H VAL B 153 1.51 REMARK 500 O LEU D 149 H VAL D 153 1.51 REMARK 500 O LEU A 152 H SER A 156 1.58 REMARK 500 O LEU C 152 H SER C 156 1.59 REMARK 500 O LEU B 152 H SER B 156 1.59 REMARK 500 O LEU D 152 H SER D 156 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 161 -174.53 -173.87 REMARK 500 1 ALA A 162 178.05 68.61 REMARK 500 1 SER B 161 -175.30 -174.98 REMARK 500 1 ALA B 162 179.11 69.36 REMARK 500 1 SER C 161 -175.32 -174.92 REMARK 500 1 ALA C 162 177.79 69.04 REMARK 500 1 SER D 161 -175.11 -174.91 REMARK 500 1 ALA D 162 178.13 69.08 REMARK 500 2 ASN A 128 -57.66 174.39 REMARK 500 2 THR A 160 -39.73 -141.32 REMARK 500 2 ASN B 128 -57.63 174.12 REMARK 500 2 THR B 160 -39.49 -142.09 REMARK 500 2 ASN C 128 -57.58 174.54 REMARK 500 2 THR C 160 -39.77 -141.91 REMARK 500 2 ASN D 128 -57.57 174.33 REMARK 500 2 THR D 160 -39.89 -141.58 REMARK 500 3 ASN A 128 -58.43 174.91 REMARK 500 3 PRO A 159 153.98 -42.94 REMARK 500 3 SER A 161 -27.48 168.08 REMARK 500 3 ASN B 128 -58.50 174.37 REMARK 500 3 PRO B 159 153.94 -43.00 REMARK 500 3 SER B 161 -27.60 168.12 REMARK 500 3 ASN C 128 -58.37 175.23 REMARK 500 3 PRO C 159 153.96 -42.72 REMARK 500 3 SER C 161 -27.74 169.08 REMARK 500 3 ASN D 128 -58.49 175.12 REMARK 500 3 PRO D 159 153.69 -43.25 REMARK 500 3 SER D 161 -28.07 168.35 REMARK 500 4 ASN A 128 -53.55 174.79 REMARK 500 4 SER A 161 -148.13 -166.72 REMARK 500 4 ALA A 162 91.72 66.27 REMARK 500 4 ASN B 128 -52.98 174.95 REMARK 500 4 SER B 161 -148.19 -167.26 REMARK 500 4 ALA B 162 91.64 66.22 REMARK 500 4 ASN C 128 -53.29 175.02 REMARK 500 4 SER C 161 -148.10 -166.98 REMARK 500 4 ALA C 162 91.78 66.27 REMARK 500 4 ASN D 128 -53.44 174.78 REMARK 500 4 SER D 161 -147.52 -166.16 REMARK 500 4 ALA D 162 91.89 66.01 REMARK 500 5 ASN A 128 -80.49 73.55 REMARK 500 5 THR A 160 -68.22 62.41 REMARK 500 5 SER A 161 -156.28 -89.24 REMARK 500 5 ASN B 128 -80.53 73.33 REMARK 500 5 THR B 160 -68.83 65.28 REMARK 500 5 SER B 161 -156.26 -89.59 REMARK 500 5 ASN C 128 -80.57 73.40 REMARK 500 5 THR C 160 -68.90 65.33 REMARK 500 5 SER C 161 -156.28 -89.70 REMARK 500 5 ASN D 128 -80.52 73.57 REMARK 500 REMARK 500 THIS ENTRY HAS 241 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34513 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION DOMAIN OF RESPIRATORY REMARK 900 SYNCYTIAL VIRUS PHOSPHOPROTEIN DBREF 6YP5 A 127 163 UNP G8FRA5 G8FRA5_9MONO 127 163 DBREF 6YP5 B 127 163 UNP G8FRA5 G8FRA5_9MONO 127 163 DBREF 6YP5 C 127 163 UNP G8FRA5 G8FRA5_9MONO 127 163 DBREF 6YP5 D 127 163 UNP G8FRA5 G8FRA5_9MONO 127 163 SEQADV 6YP5 GLY A 119 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 SER A 120 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 GLY A 121 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 SER A 122 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 GLY A 123 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 SER A 124 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 GLY A 125 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 SER A 126 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 GLY B 119 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 SER B 120 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 GLY B 121 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 SER B 122 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 GLY B 123 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 SER B 124 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 GLY B 125 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 SER B 126 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 GLY C 119 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 SER C 120 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 GLY C 121 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 SER C 122 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 GLY C 123 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 SER C 124 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 GLY C 125 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 SER C 126 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 GLY D 119 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 SER D 120 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 GLY D 121 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 SER D 122 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 GLY D 123 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 SER D 124 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 GLY D 125 UNP G8FRA5 EXPRESSION TAG SEQADV 6YP5 SER D 126 UNP G8FRA5 EXPRESSION TAG SEQRES 1 A 45 GLY SER GLY SER GLY SER GLY SER THR ASN ASP ASN ILE SEQRES 2 A 45 THR ALA ARG LEU ASP ARG ILE ASP GLU LYS LEU SER GLU SEQRES 3 A 45 ILE LEU GLY MET LEU HIS THR LEU VAL VAL ALA SER ALA SEQRES 4 A 45 GLY PRO THR SER ALA ARG SEQRES 1 B 45 GLY SER GLY SER GLY SER GLY SER THR ASN ASP ASN ILE SEQRES 2 B 45 THR ALA ARG LEU ASP ARG ILE ASP GLU LYS LEU SER GLU SEQRES 3 B 45 ILE LEU GLY MET LEU HIS THR LEU VAL VAL ALA SER ALA SEQRES 4 B 45 GLY PRO THR SER ALA ARG SEQRES 1 C 45 GLY SER GLY SER GLY SER GLY SER THR ASN ASP ASN ILE SEQRES 2 C 45 THR ALA ARG LEU ASP ARG ILE ASP GLU LYS LEU SER GLU SEQRES 3 C 45 ILE LEU GLY MET LEU HIS THR LEU VAL VAL ALA SER ALA SEQRES 4 C 45 GLY PRO THR SER ALA ARG SEQRES 1 D 45 GLY SER GLY SER GLY SER GLY SER THR ASN ASP ASN ILE SEQRES 2 D 45 THR ALA ARG LEU ASP ARG ILE ASP GLU LYS LEU SER GLU SEQRES 3 D 45 ILE LEU GLY MET LEU HIS THR LEU VAL VAL ALA SER ALA SEQRES 4 D 45 GLY PRO THR SER ALA ARG HELIX 1 AA1 THR A 127 SER A 156 1 30 HELIX 2 AA2 THR B 127 SER B 156 1 30 HELIX 3 AA3 THR C 127 SER C 156 1 30 HELIX 4 AA4 THR D 127 SER D 156 1 30 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1