HEADER HYDROLASE 15-APR-20 6YPB TITLE NUDIX1 HYDROLASE FROM ROSA X HYBRIDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: GERANYL DIPHOSPHATE PHOSPHOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NUDIX HYDROLASE 1,RHNUDX1; COMPND 5 EC: 3.6.1.68; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROSA HYBRID CULTIVAR; SOURCE 3 ORGANISM_TAXID: 128735; SOURCE 4 ORGAN: PETALS; SOURCE 5 GENE: NUDIX1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUDIX HYDROLASE, ROSE SCENT, SESQUITERPENES, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.DEGUT,S.RETY,C.TISNE,S.BAUDINO REVDAT 4 24-JAN-24 6YPB 1 REMARK REVDAT 3 16-DEC-20 6YPB 1 JRNL REVDAT 2 29-JUL-20 6YPB 1 JRNL REVDAT 1 22-JUL-20 6YPB 0 JRNL AUTH P.SUN,C.DEGUT,S.RETY,J.C.CAISSARD,L.HIBRAND-SAINT OYANT, JRNL AUTH 2 A.BONY,S.N.PARAMITA,C.CONART,J.L.MAGNARD,J.JEAUFFRE, JRNL AUTH 3 A.M.ABD-EL-HALIEM,J.MARIE-MAGDELAINE,T.THOUROUDE, JRNL AUTH 4 R.BALTENWECK,C.TISNE,F.FOUCHER,M.HARING,P.HUGUENEY, JRNL AUTH 5 R.C.SCHUURINK,S.BAUDINO JRNL TITL FUNCTIONAL DIVERSIFICATION IN THE NUDIX HYDROLASE GENE JRNL TITL 2 FAMILY DRIVES SESQUITERPENE BIOSYNTHESIS IN ROSA × JRNL TITL 3 WICHURANA. JRNL REF PLANT J. V. 104 185 2020 JRNL REFN ESSN 1365-313X JRNL PMID 32639596 JRNL DOI 10.1111/TPJ.14916 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 16172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0200 - 3.8900 0.99 1323 150 0.2011 0.2758 REMARK 3 2 3.8900 - 3.0900 0.99 1228 137 0.1845 0.1815 REMARK 3 3 3.0900 - 2.7000 1.00 1219 136 0.1900 0.2378 REMARK 3 4 2.7000 - 2.4500 1.00 1216 135 0.1950 0.2144 REMARK 3 5 2.4500 - 2.2800 1.00 1198 136 0.1877 0.1949 REMARK 3 6 2.2800 - 2.1400 1.00 1201 137 0.1924 0.1916 REMARK 3 7 2.1400 - 2.0300 1.00 1191 134 0.2098 0.2678 REMARK 3 8 2.0300 - 1.9500 1.00 1192 130 0.2347 0.2892 REMARK 3 9 1.9500 - 1.8700 1.00 1191 131 0.2233 0.2466 REMARK 3 10 1.8700 - 1.8100 1.00 1218 131 0.2495 0.3195 REMARK 3 11 1.8100 - 1.7500 1.00 1170 135 0.3343 0.3432 REMARK 3 12 1.7500 - 1.7000 1.00 1200 133 0.3871 0.4333 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.251 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.052 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1087 REMARK 3 ANGLE : 0.831 1482 REMARK 3 CHIRALITY : 0.048 160 REMARK 3 PLANARITY : 0.005 195 REMARK 3 DIHEDRAL : 17.154 402 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.8692 12.2280 3.6724 REMARK 3 T TENSOR REMARK 3 T11: 0.2850 T22: 0.1375 REMARK 3 T33: 0.1756 T12: -0.0241 REMARK 3 T13: -0.0228 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 7.8598 L22: 2.3613 REMARK 3 L33: 4.4929 L12: 3.0503 REMARK 3 L13: 3.3436 L23: 1.8123 REMARK 3 S TENSOR REMARK 3 S11: -0.2844 S12: 0.0312 S13: -0.4113 REMARK 3 S21: -0.4193 S22: 0.2138 S23: 0.0659 REMARK 3 S31: 0.3238 S32: -0.0845 S33: -0.0897 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.1923 10.7727 7.8574 REMARK 3 T TENSOR REMARK 3 T11: 0.2732 T22: 0.4679 REMARK 3 T33: 0.1676 T12: 0.1989 REMARK 3 T13: 0.0231 T23: 0.1341 REMARK 3 L TENSOR REMARK 3 L11: 3.7951 L22: 4.8196 REMARK 3 L33: 7.0412 L12: -1.6116 REMARK 3 L13: 0.3141 L23: -1.4013 REMARK 3 S TENSOR REMARK 3 S11: -0.0801 S12: 0.0547 S13: -0.2957 REMARK 3 S21: -1.1501 S22: -0.7800 S23: -0.7201 REMARK 3 S31: 1.4539 S32: 2.0280 S33: 0.0408 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): -38.6675 11.3316 9.5747 REMARK 3 T TENSOR REMARK 3 T11: 0.2603 T22: 0.1577 REMARK 3 T33: 0.2088 T12: -0.0321 REMARK 3 T13: -0.0176 T23: 0.0664 REMARK 3 L TENSOR REMARK 3 L11: 2.4628 L22: 1.6723 REMARK 3 L33: 2.1316 L12: 0.0671 REMARK 3 L13: -1.4063 L23: 0.4859 REMARK 3 S TENSOR REMARK 3 S11: -0.5413 S12: -0.1749 S13: -0.2016 REMARK 3 S21: 0.1343 S22: 0.4044 S23: 0.3184 REMARK 3 S31: 0.7178 S32: -0.0470 S33: 0.1239 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.8727 14.8410 15.8282 REMARK 3 T TENSOR REMARK 3 T11: 0.1626 T22: 0.1020 REMARK 3 T33: 0.1168 T12: 0.0284 REMARK 3 T13: -0.0137 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 4.6751 L22: 3.8582 REMARK 3 L33: 3.0322 L12: -2.2144 REMARK 3 L13: 2.1105 L23: -2.0287 REMARK 3 S TENSOR REMARK 3 S11: 0.0160 S12: -0.0849 S13: -0.0115 REMARK 3 S21: 0.1294 S22: 0.0019 S23: 0.0350 REMARK 3 S31: 0.0118 S32: 0.0416 S33: -0.0686 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.8364 15.7041 0.5675 REMARK 3 T TENSOR REMARK 3 T11: 0.2010 T22: 0.1110 REMARK 3 T33: 0.1642 T12: 0.0333 REMARK 3 T13: -0.0650 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 3.8728 L22: 1.2441 REMARK 3 L33: 4.6411 L12: -0.4309 REMARK 3 L13: 0.9882 L23: -0.9288 REMARK 3 S TENSOR REMARK 3 S11: 0.2705 S12: 0.2645 S13: -0.4029 REMARK 3 S21: -0.1424 S22: 0.0041 S23: -0.0737 REMARK 3 S31: 0.4397 S32: 0.0438 S33: -0.0981 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.8374 12.1781 12.7353 REMARK 3 T TENSOR REMARK 3 T11: 0.1412 T22: 0.3170 REMARK 3 T33: 0.1876 T12: 0.0634 REMARK 3 T13: -0.0068 T23: 0.0633 REMARK 3 L TENSOR REMARK 3 L11: 1.6319 L22: 3.0595 REMARK 3 L33: 4.3666 L12: -0.9195 REMARK 3 L13: 0.7951 L23: -0.9621 REMARK 3 S TENSOR REMARK 3 S11: 0.0377 S12: 0.2302 S13: 0.1212 REMARK 3 S21: -0.0772 S22: -0.2804 S23: -0.2735 REMARK 3 S31: 0.2936 S32: 0.8488 S33: 0.1638 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9745 18.8356 -1.1471 REMARK 3 T TENSOR REMARK 3 T11: 0.2645 T22: 0.4849 REMARK 3 T33: 0.2245 T12: 0.0316 REMARK 3 T13: 0.0134 T23: 0.0796 REMARK 3 L TENSOR REMARK 3 L11: 4.2866 L22: 4.7274 REMARK 3 L33: 5.4864 L12: 0.1738 REMARK 3 L13: 0.2532 L23: 0.0151 REMARK 3 S TENSOR REMARK 3 S11: 0.2234 S12: -0.0511 S13: -0.1485 REMARK 3 S21: -0.6389 S22: -0.5159 S23: -0.3450 REMARK 3 S31: -0.4511 S32: 0.2978 S33: 0.1564 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YPB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292107980. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.14.12 REMARK 200 DATA SCALING SOFTWARE : DIALS 1.14.12 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16180 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 39.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.20800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 1.79900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 4KYX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM AMMONIUM SULFATE, 100 MM SODIUM REMARK 280 ACETATE , 25% PEG400, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.37733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 68.75467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 68.75467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.37733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 257 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASN A 3 REMARK 465 GLU A 4 REMARK 465 THR A 5 REMARK 465 VAL A 6 REMARK 465 VAL A 7 REMARK 465 VAL A 8 REMARK 465 ALA A 9 REMARK 465 GLU A 10 REMARK 465 THR A 11 REMARK 465 ALA A 12 REMARK 465 SER A 36 REMARK 465 SER A 37 REMARK 465 LEU A 86 REMARK 465 ASP A 87 REMARK 465 GLU A 88 REMARK 465 ALA A 89 REMARK 465 LYS A 90 REMARK 465 THR A 150 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LEU A 84 O HOH A 203 1.56 REMARK 500 O HOH A 255 O HOH A 270 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 278 DISTANCE = 5.89 ANGSTROMS DBREF 6YPB A 1 150 UNP M4I1C6 NUDT1_ROSHC 1 150 SEQRES 1 A 150 MET GLY ASN GLU THR VAL VAL VAL ALA GLU THR ALA GLY SEQRES 2 A 150 SER ILE LYS VAL ALA VAL VAL VAL CYS LEU LEU ARG GLY SEQRES 3 A 150 GLN ASN VAL LEU LEU GLY ARG ARG ARG SER SER LEU GLY SEQRES 4 A 150 ASP SER THR PHE SER LEU PRO SER GLY HIS LEU GLU PHE SEQRES 5 A 150 GLY GLU SER PHE GLU GLU CYS ALA ALA ARG GLU LEU LYS SEQRES 6 A 150 GLU GLU THR ASP LEU ASP ILE GLY LYS ILE GLU LEU LEU SEQRES 7 A 150 THR VAL THR ASN ASN LEU PHE LEU ASP GLU ALA LYS PRO SEQRES 8 A 150 SER GLN TYR VAL ALA VAL PHE MET ARG ALA VAL LEU ALA SEQRES 9 A 150 ASP PRO ARG GLN GLU PRO GLN ASN ILE GLU PRO GLU PHE SEQRES 10 A 150 CYS ASP GLY TRP GLY TRP TYR GLU TRP ASP ASN LEU PRO SEQRES 11 A 150 LYS PRO LEU PHE TRP PRO LEU ASP ASN VAL VAL GLN ASP SEQRES 12 A 150 GLY PHE ASN PRO PHE PRO THR FORMUL 2 HOH *78(H2 O) HELIX 1 AA1 SER A 55 ASP A 69 1 15 HELIX 2 AA2 ASP A 127 LEU A 129 5 3 HELIX 3 AA3 PHE A 134 ASP A 143 1 10 SHEET 1 AA1 5 PHE A 43 SER A 44 0 SHEET 2 AA1 5 ASN A 28 ARG A 34 -1 N GLY A 32 O SER A 44 SHEET 3 AA1 5 SER A 14 ARG A 25 -1 N ARG A 25 O ASN A 28 SHEET 4 AA1 5 SER A 92 LEU A 103 1 O GLN A 93 N LYS A 16 SHEET 5 AA1 5 ILE A 72 LEU A 84 -1 N ASN A 83 O TYR A 94 SHEET 1 AA2 4 SER A 47 HIS A 49 0 SHEET 2 AA2 4 SER A 14 ARG A 25 -1 N VAL A 19 O GLY A 48 SHEET 3 AA2 4 ASN A 28 ARG A 34 -1 O ASN A 28 N ARG A 25 SHEET 4 AA2 4 CYS A 118 GLU A 125 -1 O TYR A 124 N VAL A 29 CISPEP 1 LYS A 131 PRO A 132 0 -0.19 CRYST1 48.674 48.674 103.132 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020545 0.011862 0.000000 0.00000 SCALE2 0.000000 0.023723 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009696 0.00000