HEADER PLANT PROTEIN 16-APR-20 6YPO TITLE ARABIDOPSIS ASPARTATE TRANSCARBAMOYLASE BOUND TO UMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRB; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AXX17_AT3G21670; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS TRANSFERASE, CHLOROPLAST, PYRIMIDINE DE NOVO BIOSYNTHESIS, PLANT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.RAMON MAIQUES,F.DEL CANO OCHOA,L.BELLIN,T.MOHLMANN REVDAT 2 24-JAN-24 6YPO 1 REMARK REVDAT 1 03-MAR-21 6YPO 0 JRNL AUTH L.BELLIN,F.DEL CANO-OCHOA,A.VELAZQUEZ-CAMPOY,T.MOHLMANN, JRNL AUTH 2 S.RAMON-MAIQUES JRNL TITL MECHANISMS OF FEEDBACK INHIBITION AND SEQUENTIAL FIRING OF JRNL TITL 2 ACTIVE SITES IN PLANT ASPARTATE TRANSCARBAMOYLASE. JRNL REF NAT COMMUN V. 12 947 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33574254 JRNL DOI 10.1038/S41467-021-21165-9 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 21.860 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 91035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 4638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.1300 - 4.5300 0.95 4421 235 0.1213 0.1483 REMARK 3 2 4.5300 - 3.6000 0.95 4375 228 0.0976 0.1227 REMARK 3 3 3.6000 - 3.1400 0.95 4360 229 0.1253 0.1561 REMARK 3 4 3.1400 - 2.8500 0.95 4387 216 0.1352 0.1392 REMARK 3 5 2.8500 - 2.6500 0.96 4374 201 0.1483 0.1815 REMARK 3 6 2.6500 - 2.4900 0.95 4334 232 0.1613 0.1887 REMARK 3 7 2.4900 - 2.3700 0.95 4339 238 0.1710 0.1794 REMARK 3 8 2.3700 - 2.2700 0.94 4286 280 0.1721 0.1797 REMARK 3 9 2.2700 - 2.1800 0.82 3771 247 0.1805 0.1884 REMARK 3 10 2.1800 - 2.1000 0.94 4327 254 0.1770 0.1796 REMARK 3 11 2.1000 - 2.0400 0.95 4326 232 0.1873 0.1823 REMARK 3 12 2.0400 - 1.9800 0.95 4346 207 0.1958 0.2242 REMARK 3 13 1.9800 - 1.9300 0.95 4364 227 0.2071 0.2290 REMARK 3 14 1.9300 - 1.8800 0.95 4327 235 0.2162 0.2270 REMARK 3 15 1.8800 - 1.8400 0.95 4344 223 0.2238 0.2153 REMARK 3 16 1.8400 - 1.8000 0.95 4330 228 0.2446 0.2608 REMARK 3 17 1.8000 - 1.7600 0.94 4297 277 0.2488 0.2646 REMARK 3 18 1.7600 - 1.7300 0.96 4366 201 0.2762 0.2787 REMARK 3 19 1.7300 - 1.7000 0.95 4348 220 0.2905 0.2791 REMARK 3 20 1.7000 - 1.6700 0.95 4322 227 0.2861 0.3488 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.674 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5141 REMARK 3 ANGLE : 0.643 6946 REMARK 3 CHIRALITY : 0.044 783 REMARK 3 PLANARITY : 0.004 890 REMARK 3 DIHEDRAL : 7.221 4329 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YPO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292108012. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91035 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 90.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.10460 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 1.39600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.640 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5G1N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 5 MG/ML IN BUFFER 20 MM REMARK 280 TRIS PH 7.0, 0.1 M NACL, 2 % GLYCEROL AND 0.2 MM TRIS(2- REMARK 280 CARBOXYETHYL) PHOSPHINE (TCEP). CRYSTALLIZATION RESERVOIR: 22 % REMARK 280 PEG 3350, 0.1 M SODIUM SULFATE, 0.1 M BIS-TRIS PH 6.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.89500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.89500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.89500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 104.54100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 181.07032 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -104.54100 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 181.07032 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 104.54100 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 181.07032 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -104.54100 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 181.07032 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 775 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 763 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 59 REMARK 465 GLY A 60 REMARK 465 SER A 61 REMARK 465 SER A 62 REMARK 465 HIS A 63 REMARK 465 HIS A 64 REMARK 465 HIS A 65 REMARK 465 HIS A 66 REMARK 465 HIS A 67 REMARK 465 HIS A 68 REMARK 465 SER A 69 REMARK 465 SER A 70 REMARK 465 GLY A 71 REMARK 465 LEU A 72 REMARK 465 GLU A 73 REMARK 465 VAL A 74 REMARK 465 LEU A 75 REMARK 465 PHE A 76 REMARK 465 GLN A 77 REMARK 465 GLY A 78 REMARK 465 MET B 59 REMARK 465 GLY B 60 REMARK 465 SER B 61 REMARK 465 SER B 62 REMARK 465 HIS B 63 REMARK 465 HIS B 64 REMARK 465 HIS B 65 REMARK 465 HIS B 66 REMARK 465 HIS B 67 REMARK 465 HIS B 68 REMARK 465 SER B 69 REMARK 465 SER B 70 REMARK 465 GLY B 71 REMARK 465 LEU B 72 REMARK 465 GLU B 73 REMARK 465 VAL B 74 REMARK 465 LEU B 75 REMARK 465 PHE B 76 REMARK 465 GLN B 77 REMARK 465 GLY B 78 REMARK 465 PRO B 79 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B 80 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 324 HE ARG A 327 1.36 REMARK 500 HD22 ASN B 157 OE1 GLU B 160 1.48 REMARK 500 OD1 ASP A 361 HH TYR A 368 1.52 REMARK 500 HZ1 LYS B 166 O HOH B 502 1.53 REMARK 500 OD1 ASP B 361 HH TYR B 368 1.53 REMARK 500 HH22 ARG A 95 OD2 ASP A 234 1.58 REMARK 500 HZ2 LYS B 334 O HOH B 501 1.58 REMARK 500 HZ2 LYS B 166 O HOH B 504 1.59 REMARK 500 OD1 ASP A 361 OH TYR A 368 1.88 REMARK 500 OD1 ASP B 361 OH TYR B 368 2.03 REMARK 500 NZ LYS B 334 O HOH B 501 2.04 REMARK 500 NZ LYS B 166 O HOH B 502 2.07 REMARK 500 O HOH A 503 O HOH A 617 2.16 REMARK 500 O HOH B 503 O HOH B 665 2.17 REMARK 500 O HOH A 511 O HOH A 764 2.18 REMARK 500 OE1 GLU A 324 NE ARG A 327 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 631 O HOH A 652 2775 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 88 -53.66 -121.69 REMARK 500 ILE A 88 -54.17 -121.69 REMARK 500 LEU A 350 152.13 67.78 REMARK 500 LEU A 353 -123.20 -104.07 REMARK 500 LEU B 350 151.64 68.58 REMARK 500 LEU B 353 -127.46 -96.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U5P A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U5P B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 DBREF1 6YPO A 82 390 UNP A0A178VJE3_ARATH DBREF2 6YPO A A0A178VJE3 82 390 DBREF1 6YPO B 82 390 UNP A0A178VJE3_ARATH DBREF2 6YPO B A0A178VJE3 82 390 SEQADV 6YPO MET A 59 UNP A0A178VJE INITIATING METHIONINE SEQADV 6YPO GLY A 60 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO SER A 61 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO SER A 62 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO HIS A 63 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO HIS A 64 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO HIS A 65 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO HIS A 66 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO HIS A 67 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO HIS A 68 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO SER A 69 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO SER A 70 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO GLY A 71 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO LEU A 72 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO GLU A 73 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO VAL A 74 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO LEU A 75 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO PHE A 76 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO GLN A 77 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO GLY A 78 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO PRO A 79 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO HIS A 80 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO MET A 81 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO MET B 59 UNP A0A178VJE INITIATING METHIONINE SEQADV 6YPO GLY B 60 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO SER B 61 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO SER B 62 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO HIS B 63 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO HIS B 64 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO HIS B 65 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO HIS B 66 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO HIS B 67 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO HIS B 68 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO SER B 69 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO SER B 70 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO GLY B 71 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO LEU B 72 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO GLU B 73 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO VAL B 74 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO LEU B 75 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO PHE B 76 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO GLN B 77 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO GLY B 78 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO PRO B 79 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO HIS B 80 UNP A0A178VJE EXPRESSION TAG SEQADV 6YPO MET B 81 UNP A0A178VJE EXPRESSION TAG SEQRES 1 A 332 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 332 LEU GLU VAL LEU PHE GLN GLY PRO HIS MET PHE GLU LEU SEQRES 3 A 332 SER ASP VAL ILE GLU GLY LYS GLN PHE ASP ARG GLU MET SEQRES 4 A 332 LEU SER ALA ILE PHE ASP VAL ALA ARG GLU MET GLU LYS SEQRES 5 A 332 ILE GLU LYS SER SER SER GLN SER GLU ILE LEU LYS GLY SEQRES 6 A 332 TYR LEU MET ALA THR LEU PHE TYR GLU PRO SER THR ARG SEQRES 7 A 332 THR ARG LEU SER PHE GLU SER ALA MET LYS ARG LEU GLY SEQRES 8 A 332 GLY GLU VAL LEU THR THR GLU ASN ALA ARG GLU PHE SER SEQRES 9 A 332 SER ALA ALA LYS GLY GLU THR LEU GLU ASP THR ILE ARG SEQRES 10 A 332 THR VAL GLU GLY TYR SER ASP ILE ILE VAL MET ARG HIS SEQRES 11 A 332 PHE GLU SER GLY ALA ALA ARG LYS ALA ALA ALA THR ALA SEQRES 12 A 332 ASN ILE PRO VAL ILE ASN ALA GLY ASP GLY PRO GLY GLU SEQRES 13 A 332 HIS PRO THR GLN ALA LEU LEU ASP VAL TYR THR ILE GLN SEQRES 14 A 332 SER GLU ILE GLY LYS LEU ASP GLY ILE SER VAL ALA LEU SEQRES 15 A 332 VAL GLY ASP LEU ALA ASN GLY ARG THR VAL ARG SER LEU SEQRES 16 A 332 ALA TYR LEU LEU ALA LYS PHE LYS ASP VAL LYS ILE TYR SEQRES 17 A 332 PHE VAL SER PRO GLU ILE VAL LYS MET LYS ASP ASP ILE SEQRES 18 A 332 LYS ASP TYR LEU THR SER SER GLY VAL GLU TRP GLU GLU SEQRES 19 A 332 SER SER ASP LEU MET GLU VAL ALA SER LYS CYS ASP VAL SEQRES 20 A 332 VAL TYR GLN THR ARG ILE GLN ARG GLU ARG PHE GLY GLU SEQRES 21 A 332 ARG LEU ASP LEU TYR GLU ALA ALA ARG GLY LYS PHE ILE SEQRES 22 A 332 VAL ASP LYS ASP LEU LEU GLY VAL MET GLN LYS LYS ALA SEQRES 23 A 332 ILE ILE MET HIS PRO LEU PRO ARG LEU ASP GLU ILE THR SEQRES 24 A 332 ALA ASP VAL ASP ALA ASP PRO ARG ALA ALA TYR PHE ARG SEQRES 25 A 332 GLN ALA LYS ASN GLY LEU PHE ILE ARG MET ALA LEU LEU SEQRES 26 A 332 LYS LEU LEU LEU VAL GLY TRP SEQRES 1 B 332 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 332 LEU GLU VAL LEU PHE GLN GLY PRO HIS MET PHE GLU LEU SEQRES 3 B 332 SER ASP VAL ILE GLU GLY LYS GLN PHE ASP ARG GLU MET SEQRES 4 B 332 LEU SER ALA ILE PHE ASP VAL ALA ARG GLU MET GLU LYS SEQRES 5 B 332 ILE GLU LYS SER SER SER GLN SER GLU ILE LEU LYS GLY SEQRES 6 B 332 TYR LEU MET ALA THR LEU PHE TYR GLU PRO SER THR ARG SEQRES 7 B 332 THR ARG LEU SER PHE GLU SER ALA MET LYS ARG LEU GLY SEQRES 8 B 332 GLY GLU VAL LEU THR THR GLU ASN ALA ARG GLU PHE SER SEQRES 9 B 332 SER ALA ALA LYS GLY GLU THR LEU GLU ASP THR ILE ARG SEQRES 10 B 332 THR VAL GLU GLY TYR SER ASP ILE ILE VAL MET ARG HIS SEQRES 11 B 332 PHE GLU SER GLY ALA ALA ARG LYS ALA ALA ALA THR ALA SEQRES 12 B 332 ASN ILE PRO VAL ILE ASN ALA GLY ASP GLY PRO GLY GLU SEQRES 13 B 332 HIS PRO THR GLN ALA LEU LEU ASP VAL TYR THR ILE GLN SEQRES 14 B 332 SER GLU ILE GLY LYS LEU ASP GLY ILE SER VAL ALA LEU SEQRES 15 B 332 VAL GLY ASP LEU ALA ASN GLY ARG THR VAL ARG SER LEU SEQRES 16 B 332 ALA TYR LEU LEU ALA LYS PHE LYS ASP VAL LYS ILE TYR SEQRES 17 B 332 PHE VAL SER PRO GLU ILE VAL LYS MET LYS ASP ASP ILE SEQRES 18 B 332 LYS ASP TYR LEU THR SER SER GLY VAL GLU TRP GLU GLU SEQRES 19 B 332 SER SER ASP LEU MET GLU VAL ALA SER LYS CYS ASP VAL SEQRES 20 B 332 VAL TYR GLN THR ARG ILE GLN ARG GLU ARG PHE GLY GLU SEQRES 21 B 332 ARG LEU ASP LEU TYR GLU ALA ALA ARG GLY LYS PHE ILE SEQRES 22 B 332 VAL ASP LYS ASP LEU LEU GLY VAL MET GLN LYS LYS ALA SEQRES 23 B 332 ILE ILE MET HIS PRO LEU PRO ARG LEU ASP GLU ILE THR SEQRES 24 B 332 ALA ASP VAL ASP ALA ASP PRO ARG ALA ALA TYR PHE ARG SEQRES 25 B 332 GLN ALA LYS ASN GLY LEU PHE ILE ARG MET ALA LEU LEU SEQRES 26 B 332 LYS LEU LEU LEU VAL GLY TRP HET U5P A 401 31 HET GOL A 402 12 HET GOL A 403 12 HET U5P B 401 32 HET GOL B 402 13 HET GOL B 403 13 HETNAM U5P URIDINE-5'-MONOPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 U5P 2(C9 H13 N2 O9 P) FORMUL 4 GOL 4(C3 H8 O3) FORMUL 9 HOH *547(H2 O) HELIX 1 AA1 GLU A 89 PHE A 93 5 5 HELIX 2 AA2 ASP A 94 SER A 114 1 21 HELIX 3 AA3 SER A 134 LEU A 148 1 15 HELIX 4 AA4 THR A 169 GLU A 178 1 10 HELIX 5 AA5 GLY A 192 ALA A 201 1 10 HELIX 6 AA6 HIS A 215 GLY A 231 1 17 HELIX 7 AA7 GLY A 247 ALA A 258 1 12 HELIX 8 AA8 PRO A 270 LYS A 274 5 5 HELIX 9 AA9 LYS A 276 SER A 285 1 10 HELIX 10 AB1 ASP A 295 SER A 301 1 7 HELIX 11 AB2 GLN A 312 GLY A 317 5 6 HELIX 12 AB3 ARG A 319 ALA A 326 1 8 HELIX 13 AB4 ASP A 333 GLY A 338 1 6 HELIX 14 AB5 THR A 357 ASP A 361 5 5 HELIX 15 AB6 ALA A 367 GLY A 389 1 23 HELIX 16 AB7 GLU B 89 PHE B 93 5 5 HELIX 17 AB8 ASP B 94 SER B 114 1 21 HELIX 18 AB9 SER B 134 LEU B 148 1 15 HELIX 19 AC1 THR B 169 GLU B 178 1 10 HELIX 20 AC2 GLY B 192 ALA B 201 1 10 HELIX 21 AC3 HIS B 215 GLY B 231 1 17 HELIX 22 AC4 GLY B 247 ALA B 258 1 12 HELIX 23 AC5 PRO B 270 LYS B 274 5 5 HELIX 24 AC6 LYS B 276 SER B 286 1 11 HELIX 25 AC7 ASP B 295 SER B 301 1 7 HELIX 26 AC8 GLN B 312 GLY B 317 5 6 HELIX 27 AC9 ARG B 319 ALA B 326 1 8 HELIX 28 AD1 ASP B 333 MET B 340 1 8 HELIX 29 AD2 THR B 357 ASP B 361 5 5 HELIX 30 AD3 ALA B 367 GLY B 389 1 23 SHEET 1 AA1 4 GLU A 151 THR A 155 0 SHEET 2 AA1 4 LEU A 125 PHE A 130 1 N THR A 128 O LEU A 153 SHEET 3 AA1 4 ILE A 183 ARG A 187 1 O VAL A 185 N LEU A 129 SHEET 4 AA1 4 VAL A 205 ASN A 207 1 O ILE A 206 N ILE A 184 SHEET 1 AA2 5 GLU A 289 SER A 293 0 SHEET 2 AA2 5 LYS A 264 VAL A 268 1 N PHE A 267 O SER A 293 SHEET 3 AA2 5 SER A 237 VAL A 241 1 N LEU A 240 O TYR A 266 SHEET 4 AA2 5 VAL A 305 TYR A 307 1 O TYR A 307 N ALA A 239 SHEET 5 AA2 5 ILE A 345 MET A 347 1 O MET A 347 N VAL A 306 SHEET 1 AA3 4 GLU B 151 THR B 155 0 SHEET 2 AA3 4 LEU B 125 PHE B 130 1 N THR B 128 O LEU B 153 SHEET 3 AA3 4 ILE B 183 HIS B 188 1 O VAL B 185 N LEU B 129 SHEET 4 AA3 4 VAL B 205 ASP B 210 1 O ALA B 208 N MET B 186 SHEET 1 AA4 5 GLU B 289 SER B 293 0 SHEET 2 AA4 5 LYS B 264 VAL B 268 1 N PHE B 267 O GLU B 291 SHEET 3 AA4 5 SER B 237 VAL B 241 1 N VAL B 238 O LYS B 264 SHEET 4 AA4 5 VAL B 305 TYR B 307 1 O TYR B 307 N ALA B 239 SHEET 5 AA4 5 ILE B 345 MET B 347 1 O MET B 347 N VAL B 306 CISPEP 1 LEU A 350 PRO A 351 0 -0.76 CISPEP 2 LEU B 350 PRO B 351 0 -0.77 SITE 1 AC1 20 ARG A 136 THR A 137 SER A 162 ALA A 164 SITE 2 AC1 20 ARG A 187 HIS A 215 GLN A 218 ARG A 248 SITE 3 AC1 20 THR A 249 THR A 309 ARG A 310 HIS A 348 SITE 4 AC1 20 PRO A 349 LEU A 350 PRO A 351 HOH A 537 SITE 5 AC1 20 HOH A 583 HOH A 584 HOH A 610 HOH A 616 SITE 1 AC2 8 ARG A 95 SER A 99 GLN A 227 LYS A 232 SITE 2 AC2 8 LEU A 233 ASP A 234 HOH A 549 HOH A 612 SITE 1 AC3 5 GLY A 90 LYS A 91 GLU A 214 SER A 252 SITE 2 AC3 5 GLU B 318 SITE 1 AC4 20 ARG B 136 THR B 137 SER B 162 ALA B 164 SITE 2 AC4 20 ARG B 187 HIS B 215 GLN B 218 ARG B 248 SITE 3 AC4 20 THR B 249 THR B 309 ARG B 310 HIS B 348 SITE 4 AC4 20 PRO B 349 LEU B 350 PRO B 351 HOH B 584 SITE 5 AC4 20 HOH B 593 HOH B 597 HOH B 605 HOH B 630 SITE 1 AC5 7 ARG B 95 SER B 99 GLN B 227 LYS B 232 SITE 2 AC5 7 LEU B 233 ASP B 234 PHE B 260 SITE 1 AC6 7 GLU A 318 GLY B 90 LYS B 91 GLU B 214 SITE 2 AC6 7 SER B 252 HOH B 512 HOH B 536 CRYST1 104.541 104.541 127.790 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009566 0.005523 0.000000 0.00000 SCALE2 0.000000 0.011045 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007825 0.00000