HEADER BIOSYNTHETIC PROTEIN 18-APR-20 6YQQ TITLE FORT-PRPP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORT-PRPP COMPLEX; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FORT-PRPP COMPLEX,BETA-RIBOFURANOSYLAMINOBENZENE 5'- COMPND 5 PHOSPHATE SYNTHASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES KANIHARAENSIS; SOURCE 3 ORGANISM_TAXID: 212423; SOURCE 4 GENE: COF6, F7Q99_03185; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS C-GLYCOSIDIC BOND, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.H.NAISMITH,S.GAO REVDAT 5 01-MAY-24 6YQQ 1 REMARK REVDAT 4 30-JUN-21 6YQQ 1 COMPND SOURCE REMARK DBREF REVDAT 3 02-DEC-20 6YQQ 1 JRNL HETSYN REVDAT 2 29-JUL-20 6YQQ 1 COMPND REMARK HETNAM SITE REVDAT 1 20-MAY-20 6YQQ 0 JRNL AUTH S.GAO,A.RADADIYA,W.LI,H.LIU,W.ZHU,V.DE CRECY-LAGARD, JRNL AUTH 2 N.G.J.RICHARDS,J.H.NAISMITH JRNL TITL UNCOVERING THE CHEMISTRY OF C-C BOND FORMATION IN JRNL TITL 2 C-NUCLEOSIDE BIOSYNTHESIS: CRYSTAL STRUCTURE OF A JRNL TITL 3 C-GLYCOSIDE SYNTHASE/PRPP COMPLEX. JRNL REF CHEM.COMMUN.(CAMB.) V. 56 7617 2020 JRNL REFN ESSN 1364-548X JRNL PMID 32515440 JRNL DOI 10.1039/D0CC02834G REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 670 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 896 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4150 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.4640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2400 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 112.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.74000 REMARK 3 B22 (A**2) : -2.74000 REMARK 3 B33 (A**2) : 5.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.517 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.295 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.286 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.100 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2477 ; 0.005 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 2294 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3382 ; 1.129 ; 1.876 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5272 ; 0.995 ; 2.934 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 317 ; 5.925 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;29.129 ;22.547 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 355 ;13.738 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;12.901 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2802 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 537 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): -12.771 14.438 9.650 REMARK 3 T TENSOR REMARK 3 T11: 0.4021 T22: 0.3045 REMARK 3 T33: 0.2578 T12: 0.1360 REMARK 3 T13: -0.0181 T23: 0.0856 REMARK 3 L TENSOR REMARK 3 L11: 2.2158 L22: 1.1898 REMARK 3 L33: 4.3516 L12: 0.3784 REMARK 3 L13: -1.1752 L23: 0.4723 REMARK 3 S TENSOR REMARK 3 S11: 0.1599 S12: 0.1328 S13: 0.5736 REMARK 3 S21: -0.2372 S22: 0.1569 S23: 0.3435 REMARK 3 S31: -0.9931 S32: -0.8340 S33: -0.3168 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): -22.979 14.920 7.991 REMARK 3 T TENSOR REMARK 3 T11: 0.2842 T22: 0.4151 REMARK 3 T33: 0.2187 T12: 0.2469 REMARK 3 T13: -0.0312 T23: 0.0504 REMARK 3 L TENSOR REMARK 3 L11: 7.9806 L22: 4.5025 REMARK 3 L33: 7.8964 L12: 2.1852 REMARK 3 L13: 3.6976 L23: 0.9704 REMARK 3 S TENSOR REMARK 3 S11: -0.0951 S12: 0.1143 S13: 0.4590 REMARK 3 S21: -0.2297 S22: 0.0868 S23: 0.6384 REMARK 3 S31: -0.3886 S32: -1.2834 S33: 0.0083 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 122 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): -13.760 12.665 0.508 REMARK 3 T TENSOR REMARK 3 T11: 0.5937 T22: 0.6325 REMARK 3 T33: 0.2021 T12: 0.0765 REMARK 3 T13: -0.0697 T23: 0.0781 REMARK 3 L TENSOR REMARK 3 L11: 11.7324 L22: 1.7790 REMARK 3 L33: 10.1773 L12: -3.6390 REMARK 3 L13: 0.8470 L23: 2.2810 REMARK 3 S TENSOR REMARK 3 S11: 0.3735 S12: 0.5870 S13: 0.4401 REMARK 3 S21: -0.3537 S22: -0.2803 S23: -0.1776 REMARK 3 S31: -0.8955 S32: -0.6478 S33: -0.0932 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 148 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): 2.548 15.184 14.215 REMARK 3 T TENSOR REMARK 3 T11: 0.3280 T22: 0.0779 REMARK 3 T33: 0.0476 T12: -0.0867 REMARK 3 T13: 0.0275 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 1.8582 L22: 1.2664 REMARK 3 L33: 5.2528 L12: 0.1284 REMARK 3 L13: -0.5992 L23: 0.1833 REMARK 3 S TENSOR REMARK 3 S11: 0.1152 S12: -0.0215 S13: 0.2668 REMARK 3 S21: -0.1753 S22: 0.0245 S23: 0.0519 REMARK 3 S31: -1.1438 S32: 0.2313 S33: -0.1397 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 6YQQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292107198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.916 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22946 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 110.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: AN UNDEPOSITED PROTEIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: POTASSIUM DIHYDROGEN PHOSPHATE, REMARK 280 GLYCEROL, PEG 8000, BIS-TRIS PROPANE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.48750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.54200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.54200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.74375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.54200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.54200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.23125 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.54200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.54200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.74375 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.54200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.54200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 83.23125 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.48750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 402 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LEU A 3 REMARK 465 ASP A 4 REMARK 465 ARG A 5 REMARK 465 PRO A 6 REMARK 465 ASP A 7 REMARK 465 ARG A 8 REMARK 465 SER A 9 REMARK 465 GLY A 10 REMARK 465 ARG A 172 REMARK 465 PRO A 173 REMARK 465 SER A 174 REMARK 465 ARG A 175 REMARK 465 PHE A 176 REMARK 465 ALA A 177 REMARK 465 GLN A 178 REMARK 465 GLN A 179 REMARK 465 LEU A 206 REMARK 465 GLY A 207 REMARK 465 GLY A 208 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 165 CG CD OE1 OE2 REMARK 470 PRO A 167 CG CD REMARK 470 GLN A 168 CG CD OE1 NE2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 TYR A 170 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 171 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 167 N - CA - CB ANGL. DEV. = 8.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 25 -73.13 -105.09 REMARK 500 ASN A 35 -139.30 62.21 REMARK 500 THR A 64 157.84 58.09 REMARK 500 CYS A 120 -151.11 -69.22 REMARK 500 GLU A 123 78.47 -118.21 REMARK 500 ALA A 147 -6.60 65.49 REMARK 500 ASP A 162 35.13 -94.50 REMARK 500 ALA A 164 85.26 -57.95 REMARK 500 GLU A 165 -42.34 158.51 REMARK 500 ALA A 166 -163.91 71.14 REMARK 500 PRO A 167 -3.24 79.46 REMARK 500 ALA A 181 99.32 167.31 REMARK 500 HIS A 202 36.01 -91.19 REMARK 500 GLU A 210 -64.70 52.39 REMARK 500 THR A 259 -30.72 -167.28 REMARK 500 VAL A 294 -121.82 60.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 281 O REMARK 620 2 ARG A 282 O 75.2 REMARK 620 3 ALA A 284 O 73.8 98.2 REMARK 620 4 VAL A 287 O 82.3 154.6 86.4 REMARK 620 N 1 2 3 DBREF1 6YQQ A 1 341 UNP A0A5S9CYM0_9ACTN DBREF2 6YQQ A A0A5S9CYM0 1 341 SEQRES 1 A 341 MET ALA LEU ASP ARG PRO ASP ARG SER GLY ALA VAL ARG SEQRES 2 A 341 VAL SER ALA PRO ALA ARG LEU SER PHE THR LEU ILE SER SEQRES 3 A 341 LEU ASP GLY SER SER LEU ARG ARG ASN GLY ILE ALA ALA SEQRES 4 A 341 MET ALA VAL ASP ARG PRO GLY LEU THR ALA GLU VAL ARG SEQRES 5 A 341 GLU ALA ALA ASP GLY ILE VAL ALA VAL THR GLY THR ALA SEQRES 6 A 341 GLU GLU THR ALA ARG GLU LEU ALA ALA ALA LEU GLU ALA SEQRES 7 A 341 LEU ARG LYS LEU TRP ASP GLY PRO ALA ALA ARG VAL ASP SEQRES 8 A 341 VAL LEU GLU ALA LEU PRO GLN HIS SER GLY PHE GLY SER SEQRES 9 A 341 LYS THR SER THR LEU LEU ALA VAL GLY HIS ALA TYR GLY SEQRES 10 A 341 ARG LEU CYS GLY VAL GLU PRO ASP LEU ARG GLU LEU ALA SEQRES 11 A 341 ARG THR LEU GLY ARG GLY ARG THR SER GLY ALA SER THR SEQRES 12 A 341 GLY LEU SER ALA TYR GLY GLY PHE LEU VAL ASP GLY GLY SEQRES 13 A 341 HIS VAL ASN PRO PRO ASP PHE ALA GLU ALA PRO GLN LYS SEQRES 14 A 341 TYR LEU ARG PRO SER ARG PHE ALA GLN GLN VAL ALA PRO SEQRES 15 A 341 PRO LYS PRO VAL VAL ARG LEU ASP PHE PRO ASP TRP PRO SEQRES 16 A 341 VAL LEU VAL LEU LEU THR HIS GLY ARG HIS LEU GLY GLY SEQRES 17 A 341 GLN GLU GLU LEU GLU TRP PHE HIS SER VAL ALA PRO ILE SEQRES 18 A 341 PRO ALA GLU GLU SER TRP ARG THR SER HIS LEU VAL PHE SEQRES 19 A 341 MET GLY LEU ALA PRO ALA VAL LEU GLU GLN ASP PHE ASP SEQRES 20 A 341 ALA PHE CYS ALA ALA VAL ASN GLU ILE THR PHE THR GLY SEQRES 21 A 341 HIS PHE LYS GLN ALA GLN ILE ALA PHE GLN GLY ASP ALA SEQRES 22 A 341 VAL ALA ASP VAL LEU GLU ALA GLY ARG ALA ALA PRO SER SEQRES 23 A 341 VAL ASP ALA ILE ALA LEU SER VAL THR GLY PRO ALA CYS SEQRES 24 A 341 PHE ALA PHE THR LYS ARG PRO GLU ASP ALA GLU ARG TRP SEQRES 25 A 341 ALA TRP GLU LEU LYS ASN ARG GLY LEU ILE ARG ASP PHE SEQRES 26 A 341 TRP PHE THR ARG ALA ASN ASN GLN GLY LEU ALA THR THR SEQRES 27 A 341 VAL VAL SER HET NA A 401 1 HET CL A 402 1 HET PRP A 403 22 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM PRP 1-O-PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE HETSYN PRP ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID; 1-O- HETSYN 2 PRP PYROPHOSPHONO-5-O-PHOSPHONO-ALPHA-D-RIBOSE; 1-O- HETSYN 3 PRP PYROPHOSPHONO-5-O-PHOSPHONO-D-RIBOSE; 1-O- HETSYN 4 PRP PYROPHOSPHONO-5-O-PHOSPHONO-RIBOSE FORMUL 2 NA NA 1+ FORMUL 3 CL CL 1- FORMUL 4 PRP C5 H13 O14 P3 FORMUL 5 HOH *6(H2 O) HELIX 1 AA1 ALA A 65 ASP A 84 1 20 HELIX 2 AA2 GLY A 103 CYS A 120 1 18 HELIX 3 AA3 ASP A 125 LEU A 133 1 9 HELIX 4 AA4 GLY A 140 GLY A 149 1 10 HELIX 5 AA5 PRO A 160 ALA A 164 5 5 HELIX 6 AA6 GLU A 210 ALA A 219 1 10 HELIX 7 AA7 PRO A 222 MET A 235 1 14 HELIX 8 AA8 GLY A 236 GLN A 244 1 9 HELIX 9 AA9 ASP A 245 PHE A 258 1 14 HELIX 10 AB1 GLY A 260 GLY A 271 1 12 HELIX 11 AB2 GLY A 271 ALA A 284 1 14 HELIX 12 AB3 ARG A 305 GLY A 320 1 16 SHEET 1 AA1 5 ALA A 60 THR A 62 0 SHEET 2 AA1 5 ALA A 88 GLU A 94 1 O VAL A 92 N THR A 62 SHEET 3 AA1 5 ARG A 33 GLU A 53 -1 N ARG A 52 O ARG A 89 SHEET 4 AA1 5 PHE A 151 ASP A 154 -1 O LEU A 152 N ALA A 39 SHEET 5 AA1 5 PRO A 185 LEU A 189 -1 O LEU A 189 N PHE A 151 SHEET 1 AA2 4 HIS A 157 VAL A 158 0 SHEET 2 AA2 4 ARG A 33 GLU A 53 -1 N ARG A 34 O HIS A 157 SHEET 3 AA2 4 VAL A 12 SER A 26 -1 N VAL A 12 O VAL A 51 SHEET 4 AA2 4 ALA A 336 VAL A 339 -1 O THR A 338 N ARG A 13 SHEET 1 AA3 4 ALA A 289 LEU A 292 0 SHEET 2 AA3 4 ALA A 298 PHE A 302 -1 O PHE A 302 N ALA A 289 SHEET 3 AA3 4 VAL A 196 THR A 201 -1 N LEU A 199 O CYS A 299 SHEET 4 AA3 4 ILE A 322 THR A 328 -1 O ARG A 323 N LEU A 200 LINK O GLY A 281 NA NA A 401 1555 1555 2.92 LINK O ARG A 282 NA NA A 401 1555 1555 2.84 LINK O ALA A 284 NA NA A 401 1555 1555 2.35 LINK O VAL A 287 NA NA A 401 1555 1555 2.25 CISPEP 1 ARG A 44 PRO A 45 0 6.32 CISPEP 2 ALA A 219 PRO A 220 0 5.01 CRYST1 81.084 81.084 110.975 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012333 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012333 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009011 0.00000