HEADER HYDROLASE 20-APR-20 6YRS TITLE STRUCTURE OF A NEW VARIANT OF GNCA ANCESTRAL BETA-LACTAMASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANCESTRAL BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-24B(+) KEYWDS HYDROLASE, ANTIBIOTIC RESISTANCE, ANCESTRAL RECONSTRUCTED EXPDTA X-RAY DIFFRACTION AUTHOR J.A.GAVIRA,V.RISSO,S.MARTINEZ-RODRIGUEZ,J.M.SANCHEZ-RUIZ,T.MODI, AUTHOR 2 S.B.OZKAN REVDAT 3 24-JAN-24 6YRS 1 REMARK REVDAT 2 08-SEP-21 6YRS 1 JRNL REMARK REVDAT 1 03-MAR-21 6YRS 0 JRNL AUTH T.MODI,V.A.RISSO,S.MARTINEZ-RODRIGUEZ,J.A.GAVIRA,M.D.MEBRAT, JRNL AUTH 2 W.D.VAN HORN,J.M.SANCHEZ-RUIZ,S.BANU OZKAN JRNL TITL HINGE-SHIFT MECHANISM AS A PROTEIN DESIGN PRINCIPLE FOR THE JRNL TITL 2 EVOLUTION OF BETA-LACTAMASES FROM SUBSTRATE PROMISCUITY TO JRNL TITL 3 SPECIFICITY. JRNL REF NAT COMMUN V. 12 1852 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33767175 JRNL DOI 10.1038/S41467-021-22089-0 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 49570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7300 - 4.4500 0.96 2652 129 0.1848 0.2127 REMARK 3 2 4.4500 - 3.5400 0.97 2584 174 0.1491 0.1660 REMARK 3 3 3.5400 - 3.0900 0.98 2626 145 0.1636 0.2326 REMARK 3 4 3.0900 - 2.8100 0.98 2676 107 0.1805 0.2404 REMARK 3 5 2.8100 - 2.6100 0.98 2607 144 0.1646 0.1827 REMARK 3 6 2.6100 - 2.4500 0.99 2645 146 0.1609 0.2051 REMARK 3 7 2.4500 - 2.3300 0.98 2650 118 0.1642 0.2089 REMARK 3 8 2.3300 - 2.2300 0.98 2632 134 0.1682 0.1951 REMARK 3 9 2.2300 - 2.1400 0.98 2642 123 0.1660 0.1792 REMARK 3 10 2.1400 - 2.0700 0.97 2563 138 0.1737 0.2297 REMARK 3 11 2.0700 - 2.0000 0.98 2613 148 0.1777 0.2094 REMARK 3 12 2.0000 - 1.9500 0.98 2607 164 0.1905 0.2187 REMARK 3 13 1.9500 - 1.8900 0.98 2594 147 0.2063 0.2283 REMARK 3 14 1.8900 - 1.8500 0.98 2619 142 0.2320 0.2881 REMARK 3 15 1.8500 - 1.8100 0.98 2585 162 0.2500 0.2793 REMARK 3 16 1.8100 - 1.7700 0.98 2594 148 0.2724 0.3098 REMARK 3 17 1.7700 - 1.7300 0.96 2590 129 0.2908 0.2757 REMARK 3 18 1.7300 - 1.7000 0.97 2561 132 0.3269 0.3556 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.206 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.905 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4241 REMARK 3 ANGLE : 1.102 5722 REMARK 3 CHIRALITY : 0.060 648 REMARK 3 PLANARITY : 0.008 756 REMARK 3 DIHEDRAL : 9.872 3387 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2412 46.3580 -3.7624 REMARK 3 T TENSOR REMARK 3 T11: 0.2547 T22: 0.3232 REMARK 3 T33: 0.3972 T12: 0.0221 REMARK 3 T13: -0.0224 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 2.9326 L22: 6.5836 REMARK 3 L33: 1.8210 L12: 1.0831 REMARK 3 L13: -1.2599 L23: -0.9903 REMARK 3 S TENSOR REMARK 3 S11: -0.0564 S12: 0.3000 S13: 0.2224 REMARK 3 S21: -0.1953 S22: 0.2093 S23: 0.9668 REMARK 3 S31: -0.1418 S32: -0.3759 S33: -0.1521 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.7745 38.5664 4.7629 REMARK 3 T TENSOR REMARK 3 T11: 0.2858 T22: 0.3284 REMARK 3 T33: 0.2779 T12: -0.0425 REMARK 3 T13: -0.0252 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 2.8590 L22: 5.1519 REMARK 3 L33: 1.5974 L12: -0.0738 REMARK 3 L13: -0.4016 L23: -0.2376 REMARK 3 S TENSOR REMARK 3 S11: 0.0544 S12: -0.2283 S13: 0.1136 REMARK 3 S21: 0.2883 S22: -0.0688 S23: -0.6553 REMARK 3 S31: -0.1199 S32: 0.2680 S33: -0.0166 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.0237 23.4908 -0.4429 REMARK 3 T TENSOR REMARK 3 T11: 0.3462 T22: 0.3002 REMARK 3 T33: 0.3470 T12: 0.0069 REMARK 3 T13: 0.0117 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 4.6755 L22: 6.1759 REMARK 3 L33: 2.8682 L12: 0.7944 REMARK 3 L13: -0.8011 L23: -0.6740 REMARK 3 S TENSOR REMARK 3 S11: -0.0182 S12: 0.1323 S13: -0.4340 REMARK 3 S21: -0.3735 S22: -0.0834 S23: -0.5044 REMARK 3 S31: 0.3909 S32: 0.2063 S33: 0.1211 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 119 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.2909 36.3177 6.7532 REMARK 3 T TENSOR REMARK 3 T11: 0.2603 T22: 0.2304 REMARK 3 T33: 0.2050 T12: -0.0353 REMARK 3 T13: 0.0007 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 2.3842 L22: 2.3321 REMARK 3 L33: 2.8342 L12: -0.2626 REMARK 3 L13: 0.4542 L23: -0.1075 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: -0.3491 S13: 0.0009 REMARK 3 S21: 0.1393 S22: 0.0179 S23: 0.0212 REMARK 3 S31: -0.1001 S32: -0.1112 S33: -0.0062 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 180 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5352 49.2905 1.8599 REMARK 3 T TENSOR REMARK 3 T11: 0.2626 T22: 0.2096 REMARK 3 T33: 0.1961 T12: 0.0184 REMARK 3 T13: 0.0217 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 3.2825 L22: 5.1561 REMARK 3 L33: 2.0740 L12: -1.4091 REMARK 3 L13: 2.4925 L23: -0.4993 REMARK 3 S TENSOR REMARK 3 S11: -0.0292 S12: -0.0071 S13: 0.4250 REMARK 3 S21: 0.2058 S22: 0.1055 S23: 0.0477 REMARK 3 S31: -0.1570 S32: -0.1834 S33: -0.0169 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 196 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.8616 49.2282 -2.7043 REMARK 3 T TENSOR REMARK 3 T11: 0.3969 T22: 0.2737 REMARK 3 T33: 0.4017 T12: -0.0862 REMARK 3 T13: -0.0201 T23: 0.0485 REMARK 3 L TENSOR REMARK 3 L11: 3.0817 L22: 1.9022 REMARK 3 L33: 4.1930 L12: 0.2452 REMARK 3 L13: 1.5825 L23: -0.3734 REMARK 3 S TENSOR REMARK 3 S11: -0.0502 S12: 0.2270 S13: 0.5422 REMARK 3 S21: 0.1504 S22: -0.1104 S23: -0.3465 REMARK 3 S31: -0.3995 S32: 0.2740 S33: 0.3803 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9340 41.9730 -13.8702 REMARK 3 T TENSOR REMARK 3 T11: 0.4076 T22: 0.2916 REMARK 3 T33: 0.2367 T12: -0.0119 REMARK 3 T13: 0.0128 T23: -0.0355 REMARK 3 L TENSOR REMARK 3 L11: 2.8205 L22: 1.9158 REMARK 3 L33: 4.3849 L12: -0.7710 REMARK 3 L13: 0.7472 L23: -1.8729 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: 0.3481 S13: 0.0639 REMARK 3 S21: -0.4599 S22: -0.0742 S23: -0.0538 REMARK 3 S31: -0.0401 S32: 0.0165 S33: 0.0939 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1439 41.8804 -6.6565 REMARK 3 T TENSOR REMARK 3 T11: 0.2643 T22: 0.2108 REMARK 3 T33: 0.1797 T12: 0.0206 REMARK 3 T13: -0.0239 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 6.1365 L22: 8.6334 REMARK 3 L33: 2.6081 L12: 4.5822 REMARK 3 L13: -1.1158 L23: -1.5604 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: 0.0881 S13: 0.0977 REMARK 3 S21: -0.3611 S22: 0.0907 S23: 0.4396 REMARK 3 S31: 0.0558 S32: -0.0374 S33: -0.0559 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 272 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5509 45.4997 -13.8069 REMARK 3 T TENSOR REMARK 3 T11: 0.4015 T22: 0.3178 REMARK 3 T33: 0.2675 T12: 0.0169 REMARK 3 T13: -0.1072 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 4.8105 L22: 7.2187 REMARK 3 L33: 4.8370 L12: 0.9434 REMARK 3 L13: 0.1531 L23: 0.2912 REMARK 3 S TENSOR REMARK 3 S11: -0.2831 S12: 0.3513 S13: 0.4617 REMARK 3 S21: -1.2718 S22: 0.3571 S23: 0.3286 REMARK 3 S31: -0.1356 S32: -0.1487 S33: -0.0748 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.8468 32.8755 27.7127 REMARK 3 T TENSOR REMARK 3 T11: 0.2658 T22: 0.3044 REMARK 3 T33: 0.2129 T12: 0.0098 REMARK 3 T13: -0.0024 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 3.1752 L22: 2.8316 REMARK 3 L33: 1.3847 L12: 1.2016 REMARK 3 L13: -0.7634 L23: -0.3077 REMARK 3 S TENSOR REMARK 3 S11: 0.0023 S12: -0.2145 S13: -0.1651 REMARK 3 S21: 0.1581 S22: -0.0086 S23: -0.1848 REMARK 3 S31: -0.0880 S32: 0.1400 S33: 0.0042 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 196 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.3481 29.2651 37.1090 REMARK 3 T TENSOR REMARK 3 T11: 0.6409 T22: 0.4327 REMARK 3 T33: 0.4152 T12: 0.0556 REMARK 3 T13: -0.1312 T23: 0.0587 REMARK 3 L TENSOR REMARK 3 L11: 5.5537 L22: 2.6267 REMARK 3 L33: 2.5919 L12: -0.6109 REMARK 3 L13: -1.8018 L23: 0.1325 REMARK 3 S TENSOR REMARK 3 S11: -0.3495 S12: -0.2859 S13: 0.2495 REMARK 3 S21: 0.9048 S22: -0.1354 S23: -0.5908 REMARK 3 S31: -0.2636 S32: 0.1909 S33: 0.4803 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YRS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292108158. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0-9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MONOCROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49578 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 48.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4B88 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL PH 9.0, 20% PEG200, REMARK 280 15% PEG4K, 10% PEG8K, COUNTER-DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.70100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 25 REMARK 465 ALA A 26 REMARK 465 ALA A 27 REMARK 465 HIS A 295 REMARK 465 HIS A 296 REMARK 465 MET B 25 REMARK 465 ALA B 26 REMARK 465 ALA B 27 REMARK 465 THR B 216 REMARK 465 GLY B 217 REMARK 465 GLY B 218 REMARK 465 LYS B 219 REMARK 465 LEU B 220 REMARK 465 LEU B 221 REMARK 465 ARG B 222 REMARK 465 ALA B 223 REMARK 465 GLY B 224 REMARK 465 LEU B 225 REMARK 465 PRO B 226 REMARK 465 ALA B 227 REMARK 465 ASP B 228 REMARK 465 TRP B 229 REMARK 465 ARG B 230 REMARK 465 ILE B 231 REMARK 465 GLY B 232 REMARK 465 ASP B 233 REMARK 465 GLY B 252 REMARK 465 PRO B 253 REMARK 465 PRO B 254 REMARK 465 GLY B 255 REMARK 465 ARG B 256 REMARK 465 HIS B 294 REMARK 465 HIS B 295 REMARK 465 HIS B 296 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 38 O HOH A 401 1.43 REMARK 500 O LYS B 234 H ILE B 247 1.55 REMARK 500 O LYS B 234 H ILE B 247 1.55 REMARK 500 OE1 GLU A 281 HH21 ARG A 284 1.56 REMARK 500 OE1 GLU B 35 HZ2 LYS B 38 1.56 REMARK 500 NZ LYS A 38 O HOH A 401 1.89 REMARK 500 OE2 GLU A 267 O HOH A 402 2.02 REMARK 500 O HOH B 461 O HOH B 474 2.11 REMARK 500 O HOH A 419 O HOH A 508 2.14 REMARK 500 O HOH A 417 O HOH A 543 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H ALA A 227 OD2 ASP B 115 1454 1.47 REMARK 500 OE2 GLU A 124 O HOH A 401 1655 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 69 -140.03 45.42 REMARK 500 TYR A 105 61.34 68.28 REMARK 500 LEU A 221 -41.69 -137.27 REMARK 500 HIS A 292 31.30 -89.19 REMARK 500 MET B 69 -132.81 43.45 REMARK 500 MET B 69 -134.94 49.57 REMARK 500 TYR B 105 65.48 60.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 307 DBREF 6YRS A 25 296 PDB 6YRS 6YRS 25 296 DBREF 6YRS B 25 296 PDB 6YRS 6YRS 25 296 SEQRES 1 A 269 MET ALA ALA GLN LEU SER GLU GLN LEU ALA GLU LEU GLU SEQRES 2 A 269 LYS ARG SER GLY GLY ARG VAL GLY VAL ILE VAL LEU ASP SEQRES 3 A 269 THR ALA THR GLY ARG ARG ILE ALA TYR ARG GLY ASP GLU SEQRES 4 A 269 ARG PHE PRO MET MET SER THR PHE LYS ALA LEU LEU ALA SEQRES 5 A 269 ALA ALA VAL LEU ALA ARG VAL ASP ALA GLY LYS GLU ARG SEQRES 6 A 269 LEU GLY ARG ARG ILE THR TYR SER LYS GLU ASP LEU VAL SEQRES 7 A 269 ASP TYR SER PRO VAL THR GLU LYS HIS VAL GLY ASP GLY SEQRES 8 A 269 MET THR VAL ALA GLU LEU CYS GLU ALA ALA ILE THR LEU SEQRES 9 A 269 SER ASP ASN THR ALA ALA ASN LEU LEU LEU GLU ALA LEU SEQRES 10 A 269 GLY GLY PRO ALA ALA LEU THR ALA PHE LEU ARG SER ILE SEQRES 11 A 269 GLY ASP GLU VAL THR ARG LEU ASP ARG TRP GLU PRO GLU SEQRES 12 A 269 LEU ASN GLU ALA ALA PRO GLY ASP GLU ARG ASP THR THR SEQRES 13 A 269 MET PRO ALA ALA MET ALA ALA THR LEU ARG THR LEU LEU SEQRES 14 A 269 LEU GLY ASP ALA LEU SER PRO ALA SER ARG GLN GLN LEU SEQRES 15 A 269 VAL ASP TRP LEU VAL ALA ASN LYS THR GLY GLY LYS LEU SEQRES 16 A 269 LEU ARG ALA GLY LEU PRO ALA ASP TRP ARG ILE GLY ASP SEQRES 17 A 269 LYS SER GLY ALA GLY GLU HIS GLY SER ARG ASN ILE ILE SEQRES 18 A 269 ALA VAL ILE GLY PRO PRO GLY ARG ALA PRO ILE ILE VAL SEQRES 19 A 269 VAL ILE TYR LEU THR GLU SER GLN VAL ASP ALA ASP ALA SEQRES 20 A 269 ARG ASP ALA VAL ILE ALA GLU VAL GLY ARG LEU VAL VAL SEQRES 21 A 269 GLU ALA PHE HIS HIS HIS HIS HIS HIS SEQRES 1 B 269 MET ALA ALA GLN LEU SER GLU GLN LEU ALA GLU LEU GLU SEQRES 2 B 269 LYS ARG SER GLY GLY ARG VAL GLY VAL ILE VAL LEU ASP SEQRES 3 B 269 THR ALA THR GLY ARG ARG ILE ALA TYR ARG GLY ASP GLU SEQRES 4 B 269 ARG PHE PRO MET MET SER THR PHE LYS ALA LEU LEU ALA SEQRES 5 B 269 ALA ALA VAL LEU ALA ARG VAL ASP ALA GLY LYS GLU ARG SEQRES 6 B 269 LEU GLY ARG ARG ILE THR TYR SER LYS GLU ASP LEU VAL SEQRES 7 B 269 ASP TYR SER PRO VAL THR GLU LYS HIS VAL GLY ASP GLY SEQRES 8 B 269 MET THR VAL ALA GLU LEU CYS GLU ALA ALA ILE THR LEU SEQRES 9 B 269 SER ASP ASN THR ALA ALA ASN LEU LEU LEU GLU ALA LEU SEQRES 10 B 269 GLY GLY PRO ALA ALA LEU THR ALA PHE LEU ARG SER ILE SEQRES 11 B 269 GLY ASP GLU VAL THR ARG LEU ASP ARG TRP GLU PRO GLU SEQRES 12 B 269 LEU ASN GLU ALA ALA PRO GLY ASP GLU ARG ASP THR THR SEQRES 13 B 269 MET PRO ALA ALA MET ALA ALA THR LEU ARG THR LEU LEU SEQRES 14 B 269 LEU GLY ASP ALA LEU SER PRO ALA SER ARG GLN GLN LEU SEQRES 15 B 269 VAL ASP TRP LEU VAL ALA ASN LYS THR GLY GLY LYS LEU SEQRES 16 B 269 LEU ARG ALA GLY LEU PRO ALA ASP TRP ARG ILE GLY ASP SEQRES 17 B 269 LYS SER GLY ALA GLY GLU HIS GLY SER ARG ASN ILE ILE SEQRES 18 B 269 ALA VAL ILE GLY PRO PRO GLY ARG ALA PRO ILE ILE VAL SEQRES 19 B 269 VAL ILE TYR LEU THR GLU SER GLN VAL ASP ALA ASP ALA SEQRES 20 B 269 ARG ASP ALA VAL ILE ALA GLU VAL GLY ARG LEU VAL VAL SEQRES 21 B 269 GLU ALA PHE HIS HIS HIS HIS HIS HIS HET ACT A 301 7 HET ACT A 302 7 HET PGE A 303 24 HET EDO A 304 10 HET EDO A 305 10 HET PGE A 306 24 HET PGE A 307 24 HET PGE A 308 48 HET EDO A 309 10 HET SO4 A 310 5 HET PGE A 311 24 HET EDO A 312 10 HET PEG A 313 17 HET EDO B 301 10 HET PEG B 302 17 HET EDO B 303 10 HET PEG B 304 17 HET EDO B 305 10 HET PEG B 306 17 HET PEG B 307 17 HETNAM ACT ACETATE ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 5 PGE 5(C6 H14 O4) FORMUL 6 EDO 7(C2 H6 O2) FORMUL 12 SO4 O4 S 2- FORMUL 15 PEG 5(C4 H10 O3) FORMUL 23 HOH *253(H2 O) HELIX 1 AA1 GLN A 28 GLY A 41 1 14 HELIX 2 AA2 THR A 71 ALA A 86 1 16 HELIX 3 AA3 SER A 98 LEU A 102 5 5 HELIX 4 AA4 VAL A 108 HIS A 112 5 5 HELIX 5 AA5 VAL A 119 LEU A 129 1 11 HELIX 6 AA6 ASP A 131 GLY A 143 1 13 HELIX 7 AA7 GLY A 144 ILE A 155 1 12 HELIX 8 AA8 PRO A 167 GLU A 171 5 5 HELIX 9 AA9 MET A 182 GLY A 196 1 15 HELIX 10 AB1 SER A 200 ALA A 213 1 14 HELIX 11 AB2 LEU A 221 LEU A 225 5 5 HELIX 12 AB3 ASP A 271 HIS A 292 1 22 HELIX 13 AB4 LEU B 29 GLY B 41 1 13 HELIX 14 AB5 THR B 71 ALA B 86 1 16 HELIX 15 AB6 SER B 98 LEU B 102 5 5 HELIX 16 AB7 VAL B 108 HIS B 112 5 5 HELIX 17 AB8 VAL B 119 SER B 130 1 12 HELIX 18 AB9 ASP B 131 GLY B 143 1 13 HELIX 19 AC1 GLY B 144 ILE B 155 1 12 HELIX 20 AC2 PRO B 167 GLU B 171 5 5 HELIX 21 AC3 MET B 182 GLY B 196 1 15 HELIX 22 AC4 SER B 200 ALA B 213 1 14 HELIX 23 AC5 ASP B 271 HIS B 293 1 23 SHEET 1 AA1 5 ARG A 56 TYR A 60 0 SHEET 2 AA1 5 ARG A 43 ASP A 50 -1 N VAL A 46 O TYR A 60 SHEET 3 AA1 5 ILE A 259 THR A 266 -1 O THR A 266 N ARG A 43 SHEET 4 AA1 5 SER A 243 GLY A 251 -1 N ILE A 250 O ILE A 259 SHEET 5 AA1 5 ARG A 230 GLY A 238 -1 N ARG A 230 O GLY A 251 SHEET 1 AA2 2 PHE A 66 PRO A 67 0 SHEET 2 AA2 2 THR A 180 THR A 181 -1 O THR A 181 N PHE A 66 SHEET 1 AA3 2 ARG A 94 ILE A 95 0 SHEET 2 AA3 2 MET A 117 THR A 118 -1 O MET A 117 N ILE A 95 SHEET 1 AA4 5 ARG B 56 TYR B 60 0 SHEET 2 AA4 5 ARG B 43 ASP B 50 -1 N VAL B 46 O TYR B 60 SHEET 3 AA4 5 ILE B 259 THR B 266 -1 O TYR B 264 N GLY B 45 SHEET 4 AA4 5 SER B 243 ILE B 250 -1 N ALA B 248 O VAL B 261 SHEET 5 AA4 5 SER B 235 GLY B 238 -1 N GLY B 236 O ASN B 245 SHEET 1 AA5 2 PHE B 66 PRO B 67 0 SHEET 2 AA5 2 THR B 180 THR B 181 -1 O THR B 181 N PHE B 66 SHEET 1 AA6 2 ARG B 94 ILE B 95 0 SHEET 2 AA6 2 MET B 117 THR B 118 -1 O MET B 117 N ILE B 95 CISPEP 1 GLU A 166 PRO A 167 0 1.12 CISPEP 2 GLU B 166 PRO B 167 0 1.90 SITE 1 AC1 7 SER A 70 TYR A 105 SER A 130 PGE A 306 SITE 2 AC1 7 SO4 A 310 HOH A 422 HOH A 428 SITE 1 AC2 2 SER A 154 GLY A 156 SITE 1 AC3 2 LEU A 194 GLN A 205 SITE 1 AC4 2 ALA A 202 SER A 203 SITE 1 AC5 4 ALA A 237 GLU A 240 ACT A 301 SO4 A 310 SITE 1 AC6 2 ARG A 56 ASP A 63 SITE 1 AC7 8 THR A 96 ASP A 101 ASN A 136 LEU A 137 SITE 2 AC7 8 GLU A 140 TRP A 165 EDO A 309 HOH A 415 SITE 1 AC8 4 GLU A 140 PGE A 308 ARG B 153 GLU B 158 SITE 1 AC9 8 SER A 130 THR A 216 LYS A 234 SER A 235 SITE 2 AC9 8 ARG A 244 ACT A 301 PGE A 306 HOH A 431 SITE 1 AD1 4 ARG A 161 GLU A 177 HOH A 519 GLU B 140 SITE 1 AD2 1 ASP A 197 SITE 1 AD3 1 ARG A 61 SITE 1 AD4 2 ALA B 188 PEG B 307 SITE 1 AD5 5 ALA A 173 ASP A 176 ARG B 83 LYS B 88 SITE 2 AD5 5 HOH B 462 SITE 1 AD6 3 LEU B 91 ALA B 202 SER B 203 SITE 1 AD7 4 TRP A 229 GLU B 110 LYS B 111 HOH B 465 SITE 1 AD8 4 THR B 96 ASP B 101 LEU B 137 GLU B 140 SITE 1 AD9 9 GLY B 156 ASP B 157 GLU B 158 VAL B 159 SITE 2 AD9 9 ALA B 185 ALA B 188 THR B 189 EDO B 301 SITE 3 AD9 9 HOH B 404 CRYST1 47.347 81.402 61.037 90.00 94.58 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021121 0.000000 0.001692 0.00000 SCALE2 0.000000 0.012285 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016436 0.00000