HEADER HYDROLASE 22-APR-20 6YSK TITLE 1-PHENYLPYRROLES AND 1-ENYLPYRROLIDINES AS INHIBITORS OF NOTUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PALMITOLEOYL-PROTEIN CARBOXYLESTERASE NOTUM; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HNOTUM; COMPND 5 EC: 3.1.1.98; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NOTUM, OK/SW-CL.30; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS NOTUM INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHAO,E.Y.JONES,P.FISH REVDAT 3 24-JAN-24 6YSK 1 REMARK REVDAT 2 23-SEP-20 6YSK 1 JRNL REVDAT 1 16-SEP-20 6YSK 0 JRNL AUTH W.MAHY,M.PATEL,D.STEADMAN,H.L.WOODWARD,B.N.ATKINSON, JRNL AUTH 2 F.SVENSSON,N.J.WILLIS,A.FLINT,D.PAPATHEODOROU,Y.ZHAO, JRNL AUTH 3 L.VECCHIA,R.R.RUZA,J.HILLIER,S.FREW,A.MONAGHAN,A.COSTA, JRNL AUTH 4 M.BICTASH,M.W.WALTER,E.Y.JONES,P.V.FISH JRNL TITL SCREENING OF A CUSTOM-DESIGNED ACID FRAGMENT LIBRARY JRNL TITL 2 IDENTIFIES 1-PHENYLPYRROLES AND 1-PHENYLPYRROLIDINES AS JRNL TITL 3 INHIBITORS OF NOTUM CARBOXYLESTERASE ACTIVITY. JRNL REF J.MED.CHEM. V. 63 9464 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32787107 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00660 REMARK 2 REMARK 2 RESOLUTION. 1.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 103744 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 5035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7000 - 3.7600 1.00 3524 193 0.1770 0.1835 REMARK 3 2 3.7600 - 2.9800 1.00 3405 159 0.1880 0.2173 REMARK 3 3 2.9800 - 2.6100 1.00 3361 158 0.2014 0.1954 REMARK 3 4 2.6100 - 2.3700 1.00 3364 163 0.1938 0.2124 REMARK 3 5 2.3700 - 2.2000 1.00 3301 197 0.1854 0.1981 REMARK 3 6 2.2000 - 2.0700 1.00 3288 169 0.1841 0.1880 REMARK 3 7 2.0700 - 1.9700 1.00 3325 166 0.1855 0.2089 REMARK 3 8 1.9700 - 1.8800 1.00 3312 150 0.1854 0.1962 REMARK 3 9 1.8800 - 1.8100 1.00 3303 156 0.1850 0.2048 REMARK 3 10 1.8100 - 1.7500 1.00 3297 152 0.1806 0.2096 REMARK 3 11 1.7500 - 1.6900 1.00 3283 177 0.1804 0.2063 REMARK 3 12 1.6900 - 1.6400 1.00 3267 174 0.1835 0.2073 REMARK 3 13 1.6400 - 1.6000 1.00 3273 169 0.1820 0.2283 REMARK 3 14 1.6000 - 1.5600 1.00 3259 180 0.1816 0.2112 REMARK 3 15 1.5600 - 1.5200 1.00 3268 170 0.1925 0.2119 REMARK 3 16 1.5200 - 1.4900 1.00 3294 150 0.1991 0.2260 REMARK 3 17 1.4900 - 1.4600 1.00 3262 155 0.2102 0.2531 REMARK 3 18 1.4600 - 1.4300 1.00 3284 171 0.2183 0.2585 REMARK 3 19 1.4300 - 1.4100 1.00 3271 165 0.2276 0.2534 REMARK 3 20 1.4100 - 1.3900 1.00 3273 157 0.2379 0.2345 REMARK 3 21 1.3900 - 1.3600 1.00 3245 158 0.2408 0.2519 REMARK 3 22 1.3600 - 1.3400 1.00 3252 193 0.2502 0.2684 REMARK 3 23 1.3400 - 1.3200 1.00 3266 168 0.2556 0.2577 REMARK 3 24 1.3200 - 1.3000 1.00 3239 174 0.2679 0.2980 REMARK 3 25 1.3000 - 1.2900 1.00 3211 193 0.2879 0.3020 REMARK 3 26 1.2900 - 1.2700 1.00 3255 178 0.2981 0.3138 REMARK 3 27 1.2700 - 1.2500 1.00 3273 167 0.3140 0.3078 REMARK 3 28 1.2500 - 1.2400 1.00 3258 154 0.3208 0.3470 REMARK 3 29 1.2400 - 1.2200 1.00 3223 166 0.3358 0.3281 REMARK 3 30 1.2200 - 1.2100 1.00 3273 153 0.3552 0.3577 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9856 -10.8857 2.4789 REMARK 3 T TENSOR REMARK 3 T11: 0.1680 T22: 0.1239 REMARK 3 T33: 0.1636 T12: 0.0038 REMARK 3 T13: 0.0116 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.8940 L22: 1.5618 REMARK 3 L33: 2.5326 L12: -0.0387 REMARK 3 L13: -0.3839 L23: 0.3397 REMARK 3 S TENSOR REMARK 3 S11: -0.0759 S12: -0.0057 S13: -0.0799 REMARK 3 S21: 0.1131 S22: 0.0387 S23: 0.0555 REMARK 3 S31: 0.3161 S32: 0.0309 S33: 0.0222 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5257 -9.2982 -4.2819 REMARK 3 T TENSOR REMARK 3 T11: 0.1558 T22: 0.1147 REMARK 3 T33: 0.1527 T12: -0.0041 REMARK 3 T13: 0.0168 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 1.4699 L22: 1.6273 REMARK 3 L33: 2.7128 L12: -0.0969 REMARK 3 L13: 0.4005 L23: 0.0336 REMARK 3 S TENSOR REMARK 3 S11: -0.0147 S12: 0.0538 S13: -0.2100 REMARK 3 S21: 0.0281 S22: 0.0781 S23: -0.0350 REMARK 3 S31: 0.3063 S32: 0.1346 S33: -0.1054 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.4445 1.9897 -2.0141 REMARK 3 T TENSOR REMARK 3 T11: 0.1095 T22: 0.1326 REMARK 3 T33: 0.1351 T12: -0.0092 REMARK 3 T13: -0.0108 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.3102 L22: 2.9802 REMARK 3 L33: 2.2640 L12: 0.3999 REMARK 3 L13: 0.5854 L23: 1.5845 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: -0.0491 S13: 0.0224 REMARK 3 S21: 0.1616 S22: -0.0198 S23: -0.1488 REMARK 3 S31: 0.1315 S32: 0.0819 S33: -0.0545 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6784 2.4737 4.2213 REMARK 3 T TENSOR REMARK 3 T11: 0.1547 T22: 0.2636 REMARK 3 T33: 0.2268 T12: 0.0082 REMARK 3 T13: -0.0447 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 3.3045 L22: 2.6696 REMARK 3 L33: 2.1622 L12: 1.2953 REMARK 3 L13: -1.7523 L23: -1.7727 REMARK 3 S TENSOR REMARK 3 S11: 0.0509 S12: -0.3598 S13: -0.1206 REMARK 3 S21: 0.0512 S22: -0.1223 S23: -0.2481 REMARK 3 S31: 0.0268 S32: 0.3771 S33: 0.0928 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 321 THROUGH 418 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2822 13.6592 -4.0056 REMARK 3 T TENSOR REMARK 3 T11: 0.1428 T22: 0.1630 REMARK 3 T33: 0.1726 T12: -0.0032 REMARK 3 T13: -0.0017 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.9652 L22: 1.1999 REMARK 3 L33: 1.4643 L12: 0.3269 REMARK 3 L13: 0.6718 L23: 0.6834 REMARK 3 S TENSOR REMARK 3 S11: -0.0283 S12: -0.0970 S13: 0.1264 REMARK 3 S21: 0.0103 S22: -0.0109 S23: 0.0563 REMARK 3 S31: -0.0905 S32: -0.0687 S33: 0.0647 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 419 THROUGH 453 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7765 16.6454 -11.3059 REMARK 3 T TENSOR REMARK 3 T11: 0.1478 T22: 0.1425 REMARK 3 T33: 0.2075 T12: -0.0065 REMARK 3 T13: -0.0309 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 2.0060 L22: 2.8767 REMARK 3 L33: 4.6927 L12: 0.0632 REMARK 3 L13: 0.1899 L23: 0.8186 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: 0.0267 S13: 0.0830 REMARK 3 S21: -0.1436 S22: 0.0154 S23: 0.1030 REMARK 3 S31: -0.0494 S32: 0.0654 S33: -0.0323 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YSK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292108193. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 500K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103841 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.210 REMARK 200 RESOLUTION RANGE LOW (A) : 59.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6R8P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULPHATE 0.1 M SODIUM REMARK 280 CITRATE, PH4.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.97000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.20500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.95000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.20500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.97000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.95000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 78 REMARK 465 THR A 79 REMARK 465 GLY A 80 REMARK 465 SER A 81 REMARK 465 ALA A 82 REMARK 465 GLN A 83 REMARK 465 GLN A 84 REMARK 465 LEU A 85 REMARK 465 ASN A 86 REMARK 465 GLU A 87 REMARK 465 SER A 421 REMARK 465 HIS A 422 REMARK 465 LYS A 423 REMARK 465 ALA A 424 REMARK 465 SER A 425 REMARK 465 LYS A 426 REMARK 465 LYS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 465 HIS A 457 REMARK 465 HIS A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 604 O HOH A 624 1.91 REMARK 500 NH2 ARG A 296 O HOH A 601 1.99 REMARK 500 OD2 ASP A 151 O HOH A 602 2.00 REMARK 500 O HOH A 637 O HOH A 684 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLY A 431 O HOH A 602 2454 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 115 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 GLU A 196 N - CA - CB ANGL. DEV. = -11.1 DEGREES REMARK 500 CYS A 440 CA - CB - SG ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 128 -142.97 59.53 REMARK 500 TYR A 129 174.10 178.64 REMARK 500 ALA A 191 46.05 -141.77 REMARK 500 SER A 232 -123.65 64.85 REMARK 500 TYR A 254 63.81 -119.78 REMARK 500 GLN A 311 176.78 67.77 REMARK 500 GLU A 390 115.83 64.86 REMARK 500 REMARK 500 REMARK: NULL DBREF 6YSK A 81 451 UNP Q6P988 NOTUM_HUMAN 81 451 SEQADV 6YSK GLU A 78 UNP Q6P988 EXPRESSION TAG SEQADV 6YSK THR A 79 UNP Q6P988 EXPRESSION TAG SEQADV 6YSK GLY A 80 UNP Q6P988 EXPRESSION TAG SEQADV 6YSK SER A 330 UNP Q6P988 CYS 330 ENGINEERED MUTATION SEQADV 6YSK GLY A 452 UNP Q6P988 EXPRESSION TAG SEQADV 6YSK THR A 453 UNP Q6P988 EXPRESSION TAG SEQADV 6YSK LYS A 454 UNP Q6P988 EXPRESSION TAG SEQADV 6YSK HIS A 455 UNP Q6P988 EXPRESSION TAG SEQADV 6YSK HIS A 456 UNP Q6P988 EXPRESSION TAG SEQADV 6YSK HIS A 457 UNP Q6P988 EXPRESSION TAG SEQADV 6YSK HIS A 458 UNP Q6P988 EXPRESSION TAG SEQADV 6YSK HIS A 459 UNP Q6P988 EXPRESSION TAG SEQADV 6YSK HIS A 460 UNP Q6P988 EXPRESSION TAG SEQRES 1 A 383 GLU THR GLY SER ALA GLN GLN LEU ASN GLU ASP LEU ARG SEQRES 2 A 383 LEU HIS LEU LEU LEU ASN THR SER VAL THR CYS ASN ASP SEQRES 3 A 383 GLY SER PRO ALA GLY TYR TYR LEU LYS GLU SER ARG GLY SEQRES 4 A 383 SER ARG ARG TRP LEU LEU PHE LEU GLU GLY GLY TRP TYR SEQRES 5 A 383 CYS PHE ASN ARG GLU ASN CYS ASP SER ARG TYR ASP THR SEQRES 6 A 383 MET ARG ARG LEU MET SER SER ARG ASP TRP PRO ARG THR SEQRES 7 A 383 ARG THR GLY THR GLY ILE LEU SER SER GLN PRO GLU GLU SEQRES 8 A 383 ASN PRO TYR TRP TRP ASN ALA ASN MET VAL PHE ILE PRO SEQRES 9 A 383 TYR CYS SER SER ASP VAL TRP SER GLY ALA SER SER LYS SEQRES 10 A 383 SER GLU LYS ASN GLU TYR ALA PHE MET GLY ALA LEU ILE SEQRES 11 A 383 ILE GLN GLU VAL VAL ARG GLU LEU LEU GLY ARG GLY LEU SEQRES 12 A 383 SER GLY ALA LYS VAL LEU LEU LEU ALA GLY SER SER ALA SEQRES 13 A 383 GLY GLY THR GLY VAL LEU LEU ASN VAL ASP ARG VAL ALA SEQRES 14 A 383 GLU GLN LEU GLU LYS LEU GLY TYR PRO ALA ILE GLN VAL SEQRES 15 A 383 ARG GLY LEU ALA ASP SER GLY TRP PHE LEU ASP ASN LYS SEQRES 16 A 383 GLN TYR ARG HIS THR ASP CYS VAL ASP THR ILE THR CYS SEQRES 17 A 383 ALA PRO THR GLU ALA ILE ARG ARG GLY ILE ARG TYR TRP SEQRES 18 A 383 ASN GLY VAL VAL PRO GLU ARG CYS ARG ARG GLN PHE GLN SEQRES 19 A 383 GLU GLY GLU GLU TRP ASN CYS PHE PHE GLY TYR LYS VAL SEQRES 20 A 383 TYR PRO THR LEU ARG SER PRO VAL PHE VAL VAL GLN TRP SEQRES 21 A 383 LEU PHE ASP GLU ALA GLN LEU THR VAL ASP ASN VAL HIS SEQRES 22 A 383 LEU THR GLY GLN PRO VAL GLN GLU GLY LEU ARG LEU TYR SEQRES 23 A 383 ILE GLN ASN LEU GLY ARG GLU LEU ARG HIS THR LEU LYS SEQRES 24 A 383 ASP VAL PRO ALA SER PHE ALA PRO ALA CYS LEU SER HIS SEQRES 25 A 383 GLU ILE ILE ILE ARG SER HIS TRP THR ASP VAL GLN VAL SEQRES 26 A 383 LYS GLY THR SER LEU PRO ARG ALA LEU HIS CYS TRP ASP SEQRES 27 A 383 ARG SER LEU HIS ASP SER HIS LYS ALA SER LYS THR PRO SEQRES 28 A 383 LEU LYS GLY CYS PRO VAL HIS LEU VAL ASP SER CYS PRO SEQRES 29 A 383 TRP PRO HIS CYS ASN PRO SER CYS PRO THR GLY THR LYS SEQRES 30 A 383 HIS HIS HIS HIS HIS HIS HET NAG A 501 14 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET DMS A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET PJK A 508 19 HET EDO A 509 4 HET EDO A 510 4 HET EDO A 511 4 HET EDO A 512 4 HET EDO A 513 4 HET EDO A 514 4 HET SO4 A 515 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM PJK (3~{S})-1-[4-CHLORANYL-3-(TRIFLUOROMETHYL) HETNAM 2 PJK PHENYL]PYRROLIDINE-3-CARBOXYLIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG C8 H15 N O6 FORMUL 3 SO4 4(O4 S 2-) FORMUL 6 DMS C2 H6 O S FORMUL 7 EDO 8(C2 H6 O2) FORMUL 9 PJK C12 H11 CL F3 N O2 FORMUL 17 HOH *123(H2 O) HELIX 1 AA1 ASN A 132 MET A 143 1 12 HELIX 2 AA2 ARG A 144 MET A 147 5 4 HELIX 3 AA3 THR A 159 SER A 163 5 5 HELIX 4 AA4 MET A 203 GLY A 217 1 15 HELIX 5 AA5 ARG A 218 ALA A 223 5 6 HELIX 6 AA6 SER A 232 GLY A 253 1 22 HELIX 7 AA7 ALA A 286 ASN A 299 1 14 HELIX 8 AA8 PRO A 303 GLN A 311 1 9 HELIX 9 AA9 GLU A 314 PHE A 319 5 6 HELIX 10 AB1 PHE A 320 TYR A 325 1 6 HELIX 11 AB2 PRO A 326 LEU A 328 5 3 HELIX 12 AB3 GLU A 341 ASP A 347 1 7 HELIX 13 AB4 GLN A 357 LYS A 376 1 20 HELIX 14 AB5 LEU A 407 LEU A 418 1 12 SHEET 1 AA110 THR A 155 ARG A 156 0 SHEET 2 AA110 LEU A 89 LEU A 93 -1 N LEU A 89 O ARG A 156 SHEET 3 AA110 GLY A 108 LYS A 112 -1 O TYR A 109 N HIS A 92 SHEET 4 AA110 ASN A 176 ILE A 180 -1 O PHE A 179 N TYR A 110 SHEET 5 AA110 ARG A 119 LEU A 124 1 N PHE A 123 O ILE A 180 SHEET 6 AA110 VAL A 225 SER A 231 1 O LEU A 227 N TRP A 120 SHEET 7 AA110 GLN A 258 ASP A 264 1 O ARG A 260 N LEU A 228 SHEET 8 AA110 VAL A 332 VAL A 335 1 O VAL A 335 N ALA A 263 SHEET 9 AA110 SER A 381 ALA A 383 1 O PHE A 382 N VAL A 334 SHEET 10 AA110 HIS A 435 VAL A 437 1 O LEU A 436 N ALA A 383 SHEET 1 AA2 2 PHE A 339 ASP A 340 0 SHEET 2 AA2 2 LEU A 387 SER A 388 1 O SER A 388 N PHE A 339 SHEET 1 AA3 2 GLN A 401 VAL A 402 0 SHEET 2 AA3 2 THR A 405 SER A 406 -1 O THR A 405 N VAL A 402 SSBOND 1 CYS A 101 CYS A 183 1555 1555 2.07 SSBOND 2 CYS A 130 CYS A 136 1555 1555 2.05 SSBOND 3 CYS A 279 CYS A 285 1555 1555 2.06 SSBOND 4 CYS A 306 CYS A 318 1555 1555 2.16 SSBOND 5 CYS A 386 CYS A 449 1555 1555 2.03 SSBOND 6 CYS A 413 CYS A 432 1555 1555 2.04 SSBOND 7 CYS A 440 CYS A 445 1555 1555 2.03 LINK ND2 ASN A 96 C1 NAG A 501 1555 1555 1.42 CRYST1 59.940 71.900 78.410 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016683 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013908 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012753 0.00000