HEADER PROTEIN TRANSPORT 24-APR-20 6YTC TITLE SOLUTION NMR STRUCTURE OF THE ISOLATED NTE DOMAIN OF BT1762-63 LEVAN TITLE 2 TRANSPORTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: TONB-DEPENDENT RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 GENE: HMPREF2534_01945; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCAN IMPORT, TRANSPORTER, N-TERMINAL DOMAIN, IG-LIKE FOLD, PROTEIN KEYWDS 2 TRANSPORT EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.RATH,A.MAZUR,S.HILLER REVDAT 3 14-JUN-23 6YTC 1 REMARK REVDAT 2 20-JAN-21 6YTC 1 JRNL REVDAT 1 08-JUL-20 6YTC 0 JRNL AUTH D.A.GRAY,J.B.R.WHITE,A.O.OLUWOLE,P.RATH,A.J.GLENWRIGHT, JRNL AUTH 2 A.MAZUR,M.ZAHN,A.BASLE,C.MORLAND,S.L.EVANS,A.CARTMELL, JRNL AUTH 3 C.V.ROBINSON,S.HILLER,N.A.RANSON,D.N.BOLAM,B.VAN DEN BERG JRNL TITL INSIGHTS INTO SUSCD-MEDIATED GLYCAN IMPORT BY A PROMINENT JRNL TITL 2 GUT SYMBIONT. JRNL REF NAT COMMUN V. 12 44 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33398001 JRNL DOI 10.1038/S41467-020-20285-Y REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292108241. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM U-15N, 13C-NTE ISOLATED NTE REMARK 210 DOMAIN OF BT1762-63 LEVAN REMARK 210 TRANSPORTER, 1 MM U-15N, 13C-NTE REMARK 210 ISOLATED NTE DOMAIN OF BT1762-63 REMARK 210 LEVAN TRANSPORTER_2, 1 MM U-15N, REMARK 210 13C-NTE ISOLATED NTE DOMAIN OF REMARK 210 BT1762-63 LEVAN TRANSPORTER_3, 1 REMARK 210 MM U-15N, 13C-NTE ISOLATED NTE REMARK 210 DOMAIN OF BT1762-63 LEVAN REMARK 210 TRANSPORTER_4, 1 MM U-15N, 13C- REMARK 210 NTE ISOLATED NTE DOMAIN OF REMARK 210 BT1762-63 LEVAN TRANSPORTER_5, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, CARA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 29 65.65 -101.32 REMARK 500 1 ASN A 32 31.41 -94.45 REMARK 500 1 GLU A 83 66.80 -109.14 REMARK 500 2 ALA A 29 110.69 -161.51 REMARK 500 2 ASN A 32 31.19 -94.26 REMARK 500 2 ASN A 49 58.89 -106.55 REMARK 500 2 ASP A 77 36.15 -96.41 REMARK 500 2 MET A 80 79.66 -108.09 REMARK 500 2 GLU A 83 61.78 -119.50 REMARK 500 3 ASN A 32 30.74 -93.13 REMARK 500 3 GLN A 79 173.31 -54.94 REMARK 500 3 MET A 80 171.24 -55.76 REMARK 500 3 ASP A 82 36.43 -97.96 REMARK 500 4 HIS A 0 140.73 -171.05 REMARK 500 4 LYS A 7 -173.37 -58.83 REMARK 500 4 ALA A 29 77.20 -117.20 REMARK 500 4 ASN A 32 31.30 -94.76 REMARK 500 4 SER A 50 -169.78 -68.53 REMARK 500 4 VAL A 81 67.65 -108.41 REMARK 500 5 ALA A 29 75.50 -100.77 REMARK 500 5 ASN A 32 31.20 -94.46 REMARK 500 5 SER A 50 -169.83 -72.84 REMARK 500 6 ALA A 29 134.61 -178.64 REMARK 500 6 ASN A 32 31.24 -93.20 REMARK 500 6 ILE A 57 107.93 -50.94 REMARK 500 6 ASP A 77 69.77 -110.89 REMARK 500 6 VAL A 81 133.78 -171.63 REMARK 500 6 GLU A 83 67.68 -116.39 REMARK 500 7 ALA A 29 111.49 -166.52 REMARK 500 7 ASN A 32 31.22 -93.51 REMARK 500 7 ILE A 57 107.75 -51.00 REMARK 500 8 LYS A 7 91.37 -66.34 REMARK 500 8 ALA A 29 68.84 -116.18 REMARK 500 8 ASN A 32 31.16 -94.95 REMARK 500 8 ASN A 49 62.38 -111.64 REMARK 500 8 THR A 78 45.74 -101.59 REMARK 500 9 LYS A 7 -171.64 -60.35 REMARK 500 9 ALA A 29 68.67 -112.81 REMARK 500 9 ASN A 32 31.16 -94.90 REMARK 500 9 ASN A 49 72.25 -100.35 REMARK 500 9 ALA A 66 95.89 -60.84 REMARK 500 9 MET A 80 170.47 -57.44 REMARK 500 10 ALA A 29 76.44 -104.89 REMARK 500 10 ASN A 32 31.42 -94.45 REMARK 500 10 SER A 50 -169.29 -100.55 REMARK 500 10 VAL A 81 56.46 -106.79 REMARK 500 11 HIS A 4 111.78 -169.21 REMARK 500 11 ALA A 29 103.34 -160.45 REMARK 500 11 ASN A 32 31.42 -93.41 REMARK 500 11 VAL A 48 53.69 -93.18 REMARK 500 REMARK 500 THIS ENTRY HAS 101 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34514 RELATED DB: BMRB REMARK 900 SOLUTION NMR STRUCTURE OF THE ISOLATED NTE DOMAIN OF BT1762-63 REMARK 900 LEVAN TRANSPORTER DBREF1 6YTC A 7 90 UNP A0A139KIX6_BACT4 DBREF2 6YTC A A0A139KIX6 32 115 SEQADV 6YTC MET A -2 UNP A0A139KIX INITIATING METHIONINE SEQADV 6YTC GLY A -1 UNP A0A139KIX EXPRESSION TAG SEQADV 6YTC HIS A 0 UNP A0A139KIX EXPRESSION TAG SEQADV 6YTC HIS A 1 UNP A0A139KIX EXPRESSION TAG SEQADV 6YTC HIS A 2 UNP A0A139KIX EXPRESSION TAG SEQADV 6YTC HIS A 3 UNP A0A139KIX EXPRESSION TAG SEQADV 6YTC HIS A 4 UNP A0A139KIX EXPRESSION TAG SEQADV 6YTC HIS A 5 UNP A0A139KIX EXPRESSION TAG SEQADV 6YTC THR A 6 UNP A0A139KIX EXPRESSION TAG SEQRES 1 A 93 MET GLY HIS HIS HIS HIS HIS HIS THR LYS GLY ASN VAL SEQRES 2 A 93 THR SER LYS THR ASP GLY GLN PRO ILE ILE GLY ALA SER SEQRES 3 A 93 VAL VAL GLU THR THR ALA THR THR ASN GLY THR ILE THR SEQRES 4 A 93 ASP PHE ASP GLY ASN PHE THR LEU SER VAL PRO VAL ASN SEQRES 5 A 93 SER THR LEU LYS ILE THR TYR ILE GLY TYR LYS PRO VAL SEQRES 6 A 93 THR VAL LYS ALA ALA ALA ILE VAL ASN VAL LEU LEU GLU SEQRES 7 A 93 GLU ASP THR GLN MET VAL ASP GLU VAL VAL VAL THR GLY SEQRES 8 A 93 TYR THR SHEET 1 AA1 2 ASN A 9 SER A 12 0 SHEET 2 AA1 2 ASN A 71 LEU A 74 1 O VAL A 72 N ASN A 9 SHEET 1 AA2 4 THR A 34 ILE A 35 0 SHEET 2 AA2 4 SER A 23 GLU A 26 -1 N VAL A 24 O THR A 34 SHEET 3 AA2 4 THR A 51 THR A 55 -1 O LYS A 53 N VAL A 25 SHEET 4 AA2 4 VAL A 62 LYS A 65 -1 O VAL A 62 N ILE A 54 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1