HEADER ONCOPROTEIN 27-APR-20 6YUH TITLE CRYSTAL STRUCTURE OF SMYD3 WITH DIPERODON R ENANTIOMER BOUND TO TITLE 2 ALLOSTERIC SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SMYD3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SET AND MYND DOMAIN-CONTAINING PROTEIN 3,ZINC FINGER MYND COMPND 5 DOMAIN-CONTAINING PROTEIN 1; COMPND 6 EC: 2.1.1.354; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SMYD3, ZMYND1, ZNFN3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS METHYLTRANSFERASE, COMPLEX, INHIBITOR, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.CEDERFELT,V.O.TALIBOV,D.DOBRITZSCH,U.H.DANIELSON REVDAT 3 24-JAN-24 6YUH 1 REMARK REVDAT 2 12-MAY-21 6YUH 1 JRNL REVDAT 1 13-JAN-21 6YUH 0 JRNL AUTH V.O.TALIBOV,E.FABINI,E.A.FITZGERALD,D.TEDESCO,D.CEDERFELDT, JRNL AUTH 2 M.J.TALU,M.M.RACHMAN,F.MIHALIC,E.MANONI,M.NALDI,P.SANESE, JRNL AUTH 3 G.FORTE,M.LEPORE SIGNORILE,X.BARRIL,C.SIMONE,M.BARTOLINI, JRNL AUTH 4 D.DOBRITZSCH,A.DEL RIO,U.H.DANIELSON JRNL TITL DISCOVERY OF AN ALLOSTERIC LIGAND BINDING SITE IN SMYD3 JRNL TITL 2 LYSINE METHYLTRANSFERASE. JRNL REF CHEMBIOCHEM V. 22 1597 2021 JRNL REFN ESSN 1439-7633 JRNL PMID 33400854 JRNL DOI 10.1002/CBIC.202000736 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 32606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 3054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.3000 - 5.4100 0.99 2650 134 0.1842 0.1934 REMARK 3 2 5.4000 - 4.2900 1.00 2644 133 0.1628 0.1964 REMARK 3 3 4.2900 - 3.7500 1.00 2637 155 0.1436 0.1810 REMARK 3 4 3.7500 - 3.4100 0.99 2666 128 0.1647 0.2201 REMARK 3 5 3.4100 - 3.1600 1.00 2608 152 0.1661 0.1936 REMARK 3 6 3.1600 - 2.9800 1.00 2659 147 0.1646 0.2120 REMARK 3 7 2.9800 - 2.8300 1.00 2672 128 0.1765 0.2555 REMARK 3 8 2.8300 - 2.7000 1.00 2678 108 0.1805 0.2610 REMARK 3 9 2.7000 - 2.6000 1.00 2683 114 0.1832 0.2316 REMARK 3 10 2.6000 - 2.5100 1.00 2701 106 0.1844 0.2707 REMARK 3 11 2.5100 - 2.4300 1.00 2601 166 0.1793 0.2350 REMARK 3 12 2.4300 - 2.3600 1.00 2657 121 0.1954 0.2297 REMARK 3 13 2.3600 - 2.3000 1.00 2651 138 0.1974 0.2623 REMARK 3 14 2.3000 - 2.2400 1.00 2690 150 0.2111 0.2742 REMARK 3 15 2.2400 - 2.1900 1.00 2637 147 0.2111 0.2314 REMARK 3 16 2.1900 - 2.1500 1.00 2635 148 0.2143 0.2410 REMARK 3 17 2.1500 - 2.1000 1.00 2705 125 0.2237 0.2853 REMARK 3 18 2.1000 - 2.0600 1.00 2587 177 0.2439 0.2735 REMARK 3 19 2.0600 - 2.0300 1.00 2653 157 0.2633 0.3514 REMARK 3 20 2.0300 - 1.9900 1.00 2612 163 0.2892 0.2872 REMARK 3 21 1.9900 - 1.9600 1.00 2672 126 0.2918 0.3664 REMARK 3 22 1.9600 - 1.9300 1.00 2655 131 0.2900 0.3433 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YUH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292106883. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.8 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32606 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 105.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.19200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 1.78800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3MEK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS BUFFER 0.1 M, PH 8.25 MAGNESIUM REMARK 280 ACETATE 0.1 M PEG3350 16%, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.07100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.97450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.14200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.97450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.07100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.14200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 100 O HOH A 601 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 22.74 -144.24 REMARK 500 ARG A 14 39.11 -140.60 REMARK 500 PHE A 31 147.99 -172.92 REMARK 500 ARG A 51 -62.48 -94.90 REMARK 500 LYS A 271 -2.06 76.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 49 SG REMARK 620 2 CYS A 52 SG 107.1 REMARK 620 3 CYS A 71 SG 111.7 110.7 REMARK 620 4 CYS A 75 SG 107.6 115.1 104.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 506 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 62 SG REMARK 620 2 CYS A 65 SG 111.6 REMARK 620 3 HIS A 83 NE2 112.1 106.1 REMARK 620 4 CYS A 87 SG 108.4 110.2 108.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 208 SG REMARK 620 2 CYS A 261 SG 113.8 REMARK 620 3 CYS A 263 SG 107.9 105.6 REMARK 620 4 CYS A 266 SG 101.4 114.7 113.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue POW A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 508 DBREF 6YUH A 3 427 UNP Q9H7B4 SMYD3_HUMAN 3 427 SEQADV 6YUH ASN A 13 UNP Q9H7B4 LYS 13 CONFLICT SEQADV 6YUH ARG A 140 UNP Q9H7B4 LYS 140 CONFLICT SEQRES 1 A 425 PRO LEU LYS VAL GLU LYS PHE ALA THR ALA ASN ARG GLY SEQRES 2 A 425 ASN GLY LEU ARG ALA VAL THR PRO LEU ARG PRO GLY GLU SEQRES 3 A 425 LEU LEU PHE ARG SER ASP PRO LEU ALA TYR THR VAL CYS SEQRES 4 A 425 LYS GLY SER ARG GLY VAL VAL CYS ASP ARG CYS LEU LEU SEQRES 5 A 425 GLY LYS GLU LYS LEU MET ARG CYS SER GLN CYS ARG VAL SEQRES 6 A 425 ALA LYS TYR CYS SER ALA LYS CYS GLN LYS LYS ALA TRP SEQRES 7 A 425 PRO ASP HIS LYS ARG GLU CYS LYS CYS LEU LYS SER CYS SEQRES 8 A 425 LYS PRO ARG TYR PRO PRO ASP SER VAL ARG LEU LEU GLY SEQRES 9 A 425 ARG VAL VAL PHE LYS LEU MET ASP GLY ALA PRO SER GLU SEQRES 10 A 425 SER GLU LYS LEU TYR SER PHE TYR ASP LEU GLU SER ASN SEQRES 11 A 425 ILE ASN LYS LEU THR GLU ASP ARG LYS GLU GLY LEU ARG SEQRES 12 A 425 GLN LEU VAL MET THR PHE GLN HIS PHE MET ARG GLU GLU SEQRES 13 A 425 ILE GLN ASP ALA SER GLN LEU PRO PRO ALA PHE ASP LEU SEQRES 14 A 425 PHE GLU ALA PHE ALA LYS VAL ILE CYS ASN SER PHE THR SEQRES 15 A 425 ILE CYS ASN ALA GLU MET GLN GLU VAL GLY VAL GLY LEU SEQRES 16 A 425 TYR PRO SER ILE SER LEU LEU ASN HIS SER CYS ASP PRO SEQRES 17 A 425 ASN CYS SER ILE VAL PHE ASN GLY PRO HIS LEU LEU LEU SEQRES 18 A 425 ARG ALA VAL ARG ASP ILE GLU VAL GLY GLU GLU LEU THR SEQRES 19 A 425 ILE CYS TYR LEU ASP MET LEU MET THR SER GLU GLU ARG SEQRES 20 A 425 ARG LYS GLN LEU ARG ASP GLN TYR CYS PHE GLU CYS ASP SEQRES 21 A 425 CYS PHE ARG CYS GLN THR GLN ASP LYS ASP ALA ASP MET SEQRES 22 A 425 LEU THR GLY ASP GLU GLN VAL TRP LYS GLU VAL GLN GLU SEQRES 23 A 425 SER LEU LYS LYS ILE GLU GLU LEU LYS ALA HIS TRP LYS SEQRES 24 A 425 TRP GLU GLN VAL LEU ALA MET CYS GLN ALA ILE ILE SER SEQRES 25 A 425 SER ASN SER GLU ARG LEU PRO ASP ILE ASN ILE TYR GLN SEQRES 26 A 425 LEU LYS VAL LEU ASP CYS ALA MET ASP ALA CYS ILE ASN SEQRES 27 A 425 LEU GLY LEU LEU GLU GLU ALA LEU PHE TYR GLY THR ARG SEQRES 28 A 425 THR MET GLU PRO TYR ARG ILE PHE PHE PRO GLY SER HIS SEQRES 29 A 425 PRO VAL ARG GLY VAL GLN VAL MET LYS VAL GLY LYS LEU SEQRES 30 A 425 GLN LEU HIS GLN GLY MET PHE PRO GLN ALA MET LYS ASN SEQRES 31 A 425 LEU ARG LEU ALA PHE ASP ILE MET ARG VAL THR HIS GLY SEQRES 32 A 425 ARG GLU HIS SER LEU ILE GLU ASP LEU ILE LEU LEU LEU SEQRES 33 A 425 GLU GLU CYS ASP ALA ASN ILE ARG ALA HET SAM A 501 27 HET GOL A 502 6 HET POW A 503 29 HET ZN A 504 1 HET ZN A 505 1 HET ZN A 506 1 HET GOL A 507 6 HET GOL A 508 6 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM GOL GLYCEROL HETNAM POW DIPERODON HETNAM ZN ZINC ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN POW [(2~{R})-2-(PHENYLCARBAMOYLOXY)-3-PIPERIDIN-1-YL- HETSYN 2 POW PROPYL] ~{N}-PHENYLCARBAMATE FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 GOL 3(C3 H8 O3) FORMUL 4 POW C22 H27 N3 O4 FORMUL 5 ZN 3(ZN 2+) FORMUL 10 HOH *252(H2 O) HELIX 1 AA1 LYS A 42 ARG A 45 5 4 HELIX 2 AA2 SER A 72 LYS A 94 1 23 HELIX 3 AA3 PRO A 99 GLY A 115 1 17 HELIX 4 AA4 SER A 118 LYS A 122 5 5 HELIX 5 AA5 SER A 125 LEU A 129 5 5 HELIX 6 AA6 ASN A 132 LEU A 136 5 5 HELIX 7 AA7 THR A 137 MET A 155 1 19 HELIX 8 AA8 ASP A 161 LEU A 165 5 5 HELIX 9 AA9 ASP A 170 SER A 182 1 13 HELIX 10 AB1 SER A 200 LEU A 204 5 5 HELIX 11 AB2 THR A 245 CYS A 258 1 14 HELIX 12 AB3 CYS A 263 GLN A 269 1 7 HELIX 13 AB4 LYS A 271 LEU A 276 1 6 HELIX 14 AB5 ASP A 279 HIS A 299 1 21 HELIX 15 AB6 LYS A 301 SER A 314 1 14 HELIX 16 AB7 ASN A 324 LEU A 341 1 18 HELIX 17 AB8 LEU A 343 PHE A 362 1 20 HELIX 18 AB9 HIS A 366 GLN A 383 1 18 HELIX 19 AC1 MET A 385 HIS A 404 1 20 HELIX 20 AC2 HIS A 408 ALA A 427 1 20 SHEET 1 AA1 4 VAL A 6 ALA A 10 0 SHEET 2 AA1 4 ASN A 16 ALA A 20 -1 O GLY A 17 N PHE A 9 SHEET 3 AA1 4 GLU A 234 ILE A 237 -1 O LEU A 235 N LEU A 18 SHEET 4 AA1 4 ASN A 205 HIS A 206 1 N ASN A 205 O ILE A 237 SHEET 1 AA2 3 LEU A 29 SER A 33 0 SHEET 2 AA2 3 HIS A 220 ALA A 225 -1 O LEU A 223 N LEU A 30 SHEET 3 AA2 3 CYS A 212 ASN A 217 -1 N VAL A 215 O LEU A 222 SHEET 1 AA3 3 ALA A 37 VAL A 40 0 SHEET 2 AA3 3 GLU A 192 LEU A 197 -1 O LEU A 197 N ALA A 37 SHEET 3 AA3 3 PHE A 183 CYS A 186 -1 N ILE A 185 O VAL A 193 SHEET 1 AA4 2 MET A 60 ARG A 61 0 SHEET 2 AA4 2 LYS A 69 TYR A 70 -1 O TYR A 70 N MET A 60 LINK SG CYS A 49 ZN ZN A 505 1555 1555 2.25 LINK SG CYS A 52 ZN ZN A 505 1555 1555 2.37 LINK SG CYS A 62 ZN ZN A 506 1555 1555 2.50 LINK SG CYS A 65 ZN ZN A 506 1555 1555 2.22 LINK SG CYS A 71 ZN ZN A 505 1555 1555 2.41 LINK SG CYS A 75 ZN ZN A 505 1555 1555 2.34 LINK NE2 HIS A 83 ZN ZN A 506 1555 1555 2.10 LINK SG CYS A 87 ZN ZN A 506 1555 1555 2.44 LINK SG CYS A 208 ZN ZN A 504 1555 1555 2.33 LINK SG CYS A 261 ZN ZN A 504 1555 1555 2.37 LINK SG CYS A 263 ZN ZN A 504 1555 1555 2.33 LINK SG CYS A 266 ZN ZN A 504 1555 1555 2.44 CISPEP 1 LYS A 94 PRO A 95 0 8.99 SITE 1 AC1 22 ARG A 14 GLY A 15 ASN A 16 TYR A 124 SITE 2 AC1 22 ASN A 132 ASN A 181 SER A 202 LEU A 203 SITE 3 AC1 22 LEU A 204 ASN A 205 HIS A 206 TYR A 239 SITE 4 AC1 22 TYR A 257 PHE A 259 GOL A 502 HOH A 621 SITE 5 AC1 22 HOH A 656 HOH A 700 HOH A 709 HOH A 752 SITE 6 AC1 22 HOH A 775 HOH A 778 SITE 1 AC2 7 ASN A 181 SER A 182 PHE A 183 SER A 202 SITE 2 AC2 7 TYR A 239 TYR A 257 SAM A 501 SITE 1 AC3 8 ALA A 188 GLU A 189 ILE A 339 LYS A 375 SITE 2 AC3 8 LYS A 378 LEU A 379 HOH A 638 HOH A 727 SITE 1 AC4 4 CYS A 208 CYS A 261 CYS A 263 CYS A 266 SITE 1 AC5 4 CYS A 49 CYS A 52 CYS A 71 CYS A 75 SITE 1 AC6 4 CYS A 62 CYS A 65 HIS A 83 CYS A 87 SITE 1 AC7 6 GLU A 130 ASN A 132 ASN A 134 LYS A 135 SITE 2 AC7 6 HOH A 602 HOH A 656 SITE 1 AC8 4 ASP A 241 LYS A 329 ASP A 332 TYR A 358 CRYST1 60.142 66.284 105.949 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016627 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015087 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009439 0.00000