HEADER OXIDOREDUCTASE 27-APR-20 6YUU TITLE CRYSTAL STRUCTURE OF M. TUBERCULOSIS INHA INHIBITED BY SKTS1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENOYL-ACP REDUCTASE,FAS-II ENOYL-ACP REDUCTASE,NADH- COMPND 5 DEPENDENT 2-TRANS-ENOYL-ACP REDUCTASE; COMPND 6 EC: 1.3.1.9; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: N-TERMINAL HIS6TAG SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS CDC1551; SOURCE 3 ORGANISM_TAXID: 83331; SOURCE 4 GENE: INHA, MT1531; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACTERIAL ENOYL-ACP REDUCTASE, DIPHENYLETHER, RESIDENCE TIME, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.ELTSCHKNER,J.SCHIEBEL,J.KEHREIN,T.A.LE,S.DAVOODI,B.MERGET, AUTHOR 2 J.D.WEINRICH,P.J.TONGE,B.ENGELS,C.A.SOTRIFFER,C.KISKER REVDAT 3 24-JAN-24 6YUU 1 REMARK REVDAT 2 21-APR-21 6YUU 1 JRNL REVDAT 1 24-MAR-21 6YUU 0 JRNL AUTH S.ELTSCHKNER,J.KEHREIN,T.A.LE,S.DAVOODI,B.MERGET,S.BASAK, JRNL AUTH 2 J.D.WEINRICH,J.SCHIEBEL,P.J.TONGE,B.ENGELS,C.SOTRIFFER, JRNL AUTH 3 C.KISKER JRNL TITL A LONG RESIDENCE TIME ENOYL-REDUCTASE INHIBITOR EXPLORES AN JRNL TITL 2 EXTENDED BINDING REGION WITH ISOENZYME-DEPENDENT TAUTOMER JRNL TITL 3 ADAPTATION AND DIFFERENTIAL SUBSTRATE-BINDING LOOP CLOSURE. JRNL REF ACS INFECT DIS. V. 7 746 2021 JRNL REFN ESSN 2373-8227 JRNL PMID 33710875 JRNL DOI 10.1021/ACSINFECDIS.0C00437 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 22432 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1216 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1594 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 72 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1996 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 294 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.55000 REMARK 3 B22 (A**2) : 0.55000 REMARK 3 B33 (A**2) : -1.79000 REMARK 3 B12 (A**2) : 0.28000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.414 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2144 ; 0.014 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 1956 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2925 ; 1.705 ; 1.775 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4574 ; 0.548 ; 1.762 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 276 ; 6.844 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;34.190 ;20.824 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 318 ;12.343 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;19.271 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 286 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2509 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 383 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1083 ; 1.475 ; 2.675 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1082 ; 1.473 ; 2.674 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1353 ; 2.103 ; 4.003 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1353 ; 2.104 ; 4.003 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1061 ; 1.879 ; 2.872 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1062 ; 1.878 ; 2.873 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1567 ; 2.778 ; 4.240 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2520 ; 5.601 ;34.584 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2453 ; 5.359 ;33.603 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 31 REMARK 3 ORIGIN FOR THE GROUP (A): 49.1302 57.8085 16.0686 REMARK 3 T TENSOR REMARK 3 T11: 0.0337 T22: 0.0694 REMARK 3 T33: 0.0395 T12: -0.0099 REMARK 3 T13: 0.0053 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 2.5904 L22: 3.4425 REMARK 3 L33: 4.0627 L12: 0.2468 REMARK 3 L13: 0.3459 L23: 1.3412 REMARK 3 S TENSOR REMARK 3 S11: 0.0315 S12: -0.0690 S13: 0.2881 REMARK 3 S21: 0.0293 S22: -0.0684 S23: 0.0236 REMARK 3 S31: -0.2838 S32: -0.1513 S33: 0.0369 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 53 REMARK 3 ORIGIN FOR THE GROUP (A): 58.0735 52.6567 12.7032 REMARK 3 T TENSOR REMARK 3 T11: 0.0238 T22: 0.1889 REMARK 3 T33: 0.0964 T12: -0.0176 REMARK 3 T13: -0.0152 T23: 0.0625 REMARK 3 L TENSOR REMARK 3 L11: 1.9844 L22: 2.9389 REMARK 3 L33: 2.7430 L12: -0.0942 REMARK 3 L13: -2.1516 L23: 0.7644 REMARK 3 S TENSOR REMARK 3 S11: -0.0621 S12: -0.1630 S13: -0.0659 REMARK 3 S21: -0.0495 S22: -0.0067 S23: -0.4147 REMARK 3 S31: 0.0106 S32: 0.3720 S33: 0.0688 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 54 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): 59.3003 49.0491 22.4595 REMARK 3 T TENSOR REMARK 3 T11: 0.0624 T22: 0.2059 REMARK 3 T33: 0.2252 T12: -0.0850 REMARK 3 T13: -0.0956 T23: 0.1069 REMARK 3 L TENSOR REMARK 3 L11: 2.5701 L22: 2.5340 REMARK 3 L33: 3.8609 L12: -0.7875 REMARK 3 L13: 1.8779 L23: 0.6810 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: -0.1442 S13: 0.1276 REMARK 3 S21: 0.1542 S22: -0.0955 S23: -0.6477 REMARK 3 S31: -0.1958 S32: 0.3313 S33: 0.0740 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 83 A 137 REMARK 3 ORIGIN FOR THE GROUP (A): 47.9178 38.8478 19.4236 REMARK 3 T TENSOR REMARK 3 T11: 0.0372 T22: 0.1329 REMARK 3 T33: 0.0444 T12: -0.0234 REMARK 3 T13: 0.0389 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.7323 L22: 1.8693 REMARK 3 L33: 0.1538 L12: 0.1233 REMARK 3 L13: -0.1078 L23: -0.0032 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: -0.0236 S13: -0.0216 REMARK 3 S21: -0.1611 S22: 0.0339 S23: -0.2242 REMARK 3 S31: -0.0476 S32: 0.1178 S33: -0.0418 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 138 A 196 REMARK 3 ORIGIN FOR THE GROUP (A): 39.3089 44.0394 20.8777 REMARK 3 T TENSOR REMARK 3 T11: 0.0084 T22: 0.0403 REMARK 3 T33: 0.0117 T12: 0.0145 REMARK 3 T13: 0.0026 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.6578 L22: 0.8201 REMARK 3 L33: 0.8585 L12: 0.2065 REMARK 3 L13: -0.2790 L23: -0.0368 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: -0.0176 S13: 0.0222 REMARK 3 S21: 0.0422 S22: 0.0217 S23: -0.0393 REMARK 3 S31: -0.0268 S32: 0.0201 S33: -0.0383 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 197 A 225 REMARK 3 ORIGIN FOR THE GROUP (A): 36.3282 40.9367 -0.2304 REMARK 3 T TENSOR REMARK 3 T11: 0.1288 T22: 0.1034 REMARK 3 T33: 0.0496 T12: -0.0474 REMARK 3 T13: 0.0107 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 2.9844 L22: 2.5157 REMARK 3 L33: 2.1165 L12: -1.9644 REMARK 3 L13: -1.2582 L23: -0.0592 REMARK 3 S TENSOR REMARK 3 S11: -0.1752 S12: 0.0844 S13: -0.1936 REMARK 3 S21: -0.2529 S22: 0.0925 S23: 0.1805 REMARK 3 S31: 0.3274 S32: -0.0842 S33: 0.0827 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 226 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): 34.0618 54.1939 14.7989 REMARK 3 T TENSOR REMARK 3 T11: 0.0329 T22: 0.0284 REMARK 3 T33: 0.0313 T12: 0.0083 REMARK 3 T13: 0.0119 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.1879 L22: 0.9828 REMARK 3 L33: 1.9475 L12: 0.1486 REMARK 3 L13: 0.5328 L23: 0.3068 REMARK 3 S TENSOR REMARK 3 S11: -0.0345 S12: 0.0877 S13: 0.1003 REMARK 3 S21: -0.1273 S22: -0.0127 S23: -0.0769 REMARK 3 S31: -0.1420 S32: 0.1023 S33: 0.0472 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6YUU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292107551. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23730 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 47.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.10 REMARK 200 R MERGE (I) : 0.17700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.09500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2X23 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS, PH 8.4 3 M NACL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.78967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.57933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.78967 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.57933 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.78967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 85.57933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 42.78967 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 85.57933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -346.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 47.76200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 82.72621 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 42.78967 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 47.76200 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 82.72621 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 42.78967 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 500 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 607 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 669 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 681 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 200 O HOH A 401 2.06 REMARK 500 OE1 GLN A 48 O HOH A 402 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 225 NE - CZ - NH1 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 42 -62.26 71.78 REMARK 500 ALA A 124 -61.76 -123.32 REMARK 500 ALA A 157 -43.57 73.67 REMARK 500 ASN A 159 -118.99 53.33 REMARK 500 ALA A 260 73.83 -106.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 45 0.08 SIDE CHAIN REMARK 500 ARG A 153 0.20 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 694 DISTANCE = 5.90 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 308 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 223 O REMARK 620 2 GLN A 224 O 83.1 REMARK 620 3 ALA A 226 O 91.1 104.7 REMARK 620 4 HOH A 601 O 160.9 77.8 94.9 REMARK 620 5 HOH A 629 O 88.9 85.9 169.2 88.5 REMARK 620 6 HOH A 630 O 101.9 160.5 94.0 95.7 75.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F9T A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6YUR RELATED DB: PDB DBREF 6YUU A 1 269 UNP P9WGR0 INHA_MYCTO 1 269 SEQADV 6YUU MET A -19 UNP P9WGR0 INITIATING METHIONINE SEQADV 6YUU GLY A -18 UNP P9WGR0 EXPRESSION TAG SEQADV 6YUU SER A -17 UNP P9WGR0 EXPRESSION TAG SEQADV 6YUU SER A -16 UNP P9WGR0 EXPRESSION TAG SEQADV 6YUU HIS A -15 UNP P9WGR0 EXPRESSION TAG SEQADV 6YUU HIS A -14 UNP P9WGR0 EXPRESSION TAG SEQADV 6YUU HIS A -13 UNP P9WGR0 EXPRESSION TAG SEQADV 6YUU HIS A -12 UNP P9WGR0 EXPRESSION TAG SEQADV 6YUU HIS A -11 UNP P9WGR0 EXPRESSION TAG SEQADV 6YUU HIS A -10 UNP P9WGR0 EXPRESSION TAG SEQADV 6YUU SER A -9 UNP P9WGR0 EXPRESSION TAG SEQADV 6YUU SER A -8 UNP P9WGR0 EXPRESSION TAG SEQADV 6YUU GLY A -7 UNP P9WGR0 EXPRESSION TAG SEQADV 6YUU LEU A -6 UNP P9WGR0 EXPRESSION TAG SEQADV 6YUU VAL A -5 UNP P9WGR0 EXPRESSION TAG SEQADV 6YUU PRO A -4 UNP P9WGR0 EXPRESSION TAG SEQADV 6YUU ARG A -3 UNP P9WGR0 EXPRESSION TAG SEQADV 6YUU GLY A -2 UNP P9WGR0 EXPRESSION TAG SEQADV 6YUU SER A -1 UNP P9WGR0 EXPRESSION TAG SEQADV 6YUU HIS A 0 UNP P9WGR0 EXPRESSION TAG SEQRES 1 A 289 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 289 LEU VAL PRO ARG GLY SER HIS MET THR GLY LEU LEU ASP SEQRES 3 A 289 GLY LYS ARG ILE LEU VAL SER GLY ILE ILE THR ASP SER SEQRES 4 A 289 SER ILE ALA PHE HIS ILE ALA ARG VAL ALA GLN GLU GLN SEQRES 5 A 289 GLY ALA GLN LEU VAL LEU THR GLY PHE ASP ARG LEU ARG SEQRES 6 A 289 LEU ILE GLN ARG ILE THR ASP ARG LEU PRO ALA LYS ALA SEQRES 7 A 289 PRO LEU LEU GLU LEU ASP VAL GLN ASN GLU GLU HIS LEU SEQRES 8 A 289 ALA SER LEU ALA GLY ARG VAL THR GLU ALA ILE GLY ALA SEQRES 9 A 289 GLY ASN LYS LEU ASP GLY VAL VAL HIS SER ILE GLY PHE SEQRES 10 A 289 MET PRO GLN THR GLY MET GLY ILE ASN PRO PHE PHE ASP SEQRES 11 A 289 ALA PRO TYR ALA ASP VAL SER LYS GLY ILE HIS ILE SER SEQRES 12 A 289 ALA TYR SER TYR ALA SER MET ALA LYS ALA LEU LEU PRO SEQRES 13 A 289 ILE MET ASN PRO GLY GLY SER ILE VAL GLY MET ASP PHE SEQRES 14 A 289 ASP PRO SER ARG ALA MET PRO ALA TYR ASN TRP MET THR SEQRES 15 A 289 VAL ALA LYS SER ALA LEU GLU SER VAL ASN ARG PHE VAL SEQRES 16 A 289 ALA ARG GLU ALA GLY LYS TYR GLY VAL ARG SER ASN LEU SEQRES 17 A 289 VAL ALA ALA GLY PRO ILE ARG THR LEU ALA MET SER ALA SEQRES 18 A 289 ILE VAL GLY GLY ALA LEU GLY GLU GLU ALA GLY ALA GLN SEQRES 19 A 289 ILE GLN LEU LEU GLU GLU GLY TRP ASP GLN ARG ALA PRO SEQRES 20 A 289 ILE GLY TRP ASN MET LYS ASP ALA THR PRO VAL ALA LYS SEQRES 21 A 289 THR VAL CYS ALA LEU LEU SER ASP TRP LEU PRO ALA THR SEQRES 22 A 289 THR GLY ASP ILE ILE TYR ALA ASP GLY GLY ALA HIS THR SEQRES 23 A 289 GLN LEU LEU HET NAD A 301 44 HET F9T A 302 28 HET CL A 303 1 HET CL A 304 1 HET CL A 305 1 HET CL A 306 1 HET CL A 307 1 HET NA A 308 1 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM F9T 6-[4-(4-HEXYL-2-OXIDANYL-PHENOXY)PHENOXY]PYRIDIN-2-OL HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 F9T C23 H25 N O4 FORMUL 4 CL 5(CL 1-) FORMUL 9 NA NA 1+ FORMUL 10 HOH *294(H2 O) HELIX 1 AA1 SER A 20 GLN A 32 1 13 HELIX 2 AA2 ARG A 43 ASP A 52 1 10 HELIX 3 AA3 ASN A 67 GLY A 83 1 17 HELIX 4 AA4 PRO A 99 MET A 103 5 5 HELIX 5 AA5 PRO A 107 ALA A 111 5 5 HELIX 6 AA6 PRO A 112 ALA A 124 1 13 HELIX 7 AA7 ALA A 124 LEU A 135 1 12 HELIX 8 AA8 TYR A 158 LYS A 181 1 24 HELIX 9 AA9 THR A 196 LEU A 207 1 12 HELIX 10 AB1 GLU A 209 ALA A 226 1 18 HELIX 11 AB2 ALA A 235 SER A 247 1 13 HELIX 12 AB3 GLY A 263 GLN A 267 5 5 SHEET 1 AA1 7 LEU A 60 GLU A 62 0 SHEET 2 AA1 7 GLN A 35 GLY A 40 1 N LEU A 38 O LEU A 61 SHEET 3 AA1 7 ARG A 9 SER A 13 1 N VAL A 12 O VAL A 37 SHEET 4 AA1 7 LEU A 88 HIS A 93 1 O ASP A 89 N ARG A 9 SHEET 5 AA1 7 MET A 138 ASP A 148 1 O VAL A 145 N HIS A 93 SHEET 6 AA1 7 ARG A 185 ALA A 191 1 O VAL A 189 N ASP A 148 SHEET 7 AA1 7 ASP A 256 ALA A 260 1 O ILE A 258 N LEU A 188 LINK O ASP A 223 NA NA A 308 1555 1555 2.38 LINK O GLN A 224 NA NA A 308 1555 1555 2.56 LINK O ALA A 226 NA NA A 308 1555 1555 2.36 LINK NA NA A 308 O HOH A 601 1555 1555 2.35 LINK NA NA A 308 O HOH A 629 1555 1555 2.50 LINK NA NA A 308 O HOH A 630 1555 1555 2.32 SITE 1 AC1 33 GLY A 14 ILE A 15 ILE A 16 SER A 20 SITE 2 AC1 33 ILE A 21 PHE A 41 LEU A 63 ASP A 64 SITE 3 AC1 33 VAL A 65 SER A 94 ILE A 95 GLY A 96 SITE 4 AC1 33 ILE A 122 MET A 147 ASP A 148 PHE A 149 SITE 5 AC1 33 LYS A 165 ALA A 191 GLY A 192 PRO A 193 SITE 6 AC1 33 ILE A 194 THR A 196 ALA A 198 F9T A 302 SITE 7 AC1 33 HOH A 421 HOH A 449 HOH A 450 HOH A 486 SITE 8 AC1 33 HOH A 493 HOH A 499 HOH A 545 HOH A 560 SITE 9 AC1 33 HOH A 570 SITE 1 AC2 11 GLY A 96 PHE A 97 MET A 98 GLN A 100 SITE 2 AC2 11 MET A 103 PRO A 156 TYR A 158 MET A 161 SITE 3 AC2 11 ALA A 198 GLY A 204 NAD A 301 SITE 1 AC3 4 ARG A 53 ARG A 195 MET A 232 HOH A 543 SITE 1 AC4 1 PRO A 251 SITE 1 AC5 2 GLU A 62 ARG A 77 SITE 1 AC6 2 GLU A 69 SER A 73 SITE 1 AC7 3 LEU A 44 ARG A 45 HOH A 606 SITE 1 AC8 6 ASP A 223 GLN A 224 ALA A 226 HOH A 601 SITE 2 AC8 6 HOH A 629 HOH A 630 CRYST1 95.524 95.524 128.369 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010469 0.006044 0.000000 0.00000 SCALE2 0.000000 0.012088 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007790 0.00000