HEADER MEMBRANE PROTEIN 27-APR-20 6YV1 TITLE STRUCTURE OF HUMAN B(0,+)AT1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: B(0,+)-TYPE AMINO ACID TRANSPORTER 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: B(0,+)AT1,GLYCOPROTEIN-ASSOCIATED AMINO ACID TRANSPORTER B0, COMPND 5 +AT1,SOLUTE CARRIER FAMILY 7 MEMBER 9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SLC7A9, BAT1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HEK293; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: FLPINTREX; SOURCE 11 EXPRESSION_SYSTEM_CELL_LINE: FLPINTREX KEYWDS MEMBRANE TRANSPORTER HETEROMERIC AMINO ACID TRANSPORTER HUMAN KEYWDS 2 TRANSPORTER, MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR D.WU,S.SAFARIAN,H.MICHEL REVDAT 2 22-MAY-24 6YV1 1 REMARK REVDAT 1 20-JAN-21 6YV1 0 JRNL AUTH D.WU,T.N.GRUND,S.WELSCH,D.J.MILLS,M.MICHEL,S.SAFARIAN, JRNL AUTH 2 H.MICHEL JRNL TITL STRUCTURAL BASIS FOR AMINO ACID EXCHANGE BY A HUMAN JRNL TITL 2 HETEROMERIC AMINO ACID TRANSPORTER. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 21281 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32817565 JRNL DOI 10.1073/PNAS.2008111117 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : TOPAZ, GCTF, COOT, PHENIX, RELION, REMARK 3 RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.400 REMARK 3 NUMBER OF PARTICLES : 104202 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6YV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292108336. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN B(0,+)AT1 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.50 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 GLY A 5 REMARK 465 LEU A 6 REMARK 465 ARG A 7 REMARK 465 LYS A 8 REMARK 465 ARG A 9 REMARK 465 ARG A 10 REMARK 465 GLU A 11 REMARK 465 ASP A 12 REMARK 465 GLU A 13 REMARK 465 LYS A 14 REMARK 465 SER A 15 REMARK 465 ILE A 16 REMARK 465 GLN A 17 REMARK 465 SER A 18 REMARK 465 GLN A 19 REMARK 465 GLU A 20 REMARK 465 PRO A 21 REMARK 465 LYS A 22 REMARK 465 THR A 23 REMARK 465 THR A 24 REMARK 465 SER A 25 REMARK 465 LEU A 26 REMARK 465 GLN A 27 REMARK 465 LYS A 28 REMARK 465 GLU A 29 REMARK 465 LEU A 30 REMARK 465 LYS A 92 REMARK 465 SER A 93 REMARK 465 GLY A 94 REMARK 465 GLY A 95 REMARK 465 GLU A 96 REMARK 465 TYR A 97 REMARK 465 PRO A 98 REMARK 465 ALA A 103 REMARK 465 TYR A 104 REMARK 465 GLY A 105 REMARK 465 SER A 169 REMARK 465 VAL A 170 REMARK 465 ARG A 171 REMARK 465 LEU A 172 REMARK 465 GLY A 173 REMARK 465 SER A 174 REMARK 465 TYR A 175 REMARK 465 VAL A 176 REMARK 465 GLN A 177 REMARK 465 GLN A 201 REMARK 465 GLY A 202 REMARK 465 ASN A 203 REMARK 465 THR A 204 REMARK 465 LYS A 205 REMARK 465 ASN A 206 REMARK 465 PHE A 207 REMARK 465 ASP A 208 REMARK 465 ASN A 209 REMARK 465 SER A 210 REMARK 465 PHE A 211 REMARK 465 GLU A 212 REMARK 465 GLY A 213 REMARK 465 ALA A 214 REMARK 465 GLN A 215 REMARK 465 LEU A 216 REMARK 465 SER A 217 REMARK 465 VAL A 218 REMARK 465 ASN A 318 REMARK 465 GLY A 319 REMARK 465 THR A 320 REMARK 465 CYS A 321 REMARK 465 PHE A 322 REMARK 465 THR A 323 REMARK 465 ALA A 324 REMARK 465 GLY A 325 REMARK 465 ARG A 326 REMARK 465 LEU A 327 REMARK 465 ILE A 328 REMARK 465 TYR A 329 REMARK 465 VAL A 330 REMARK 465 ALA A 331 REMARK 465 GLY A 332 REMARK 465 ARG A 333 REMARK 465 GLU A 334 REMARK 465 GLY A 335 REMARK 465 HIS A 336 REMARK 465 MET A 337 REMARK 465 LEU A 338 REMARK 465 LYS A 339 REMARK 465 VAL A 340 REMARK 465 LEU A 341 REMARK 465 SER A 342 REMARK 465 TYR A 343 REMARK 465 ILE A 344 REMARK 465 SER A 345 REMARK 465 VAL A 346 REMARK 465 ARG A 347 REMARK 465 ARG A 348 REMARK 465 LEU A 349 REMARK 465 THR A 350 REMARK 465 MET A 396 REMARK 465 ARG A 397 REMARK 465 PHE A 398 REMARK 465 THR A 399 REMARK 465 ARG A 400 REMARK 465 LYS A 401 REMARK 465 GLU A 402 REMARK 465 LEU A 403 REMARK 465 GLU A 404 REMARK 465 ARG A 405 REMARK 465 PRO A 406 REMARK 465 ILE A 407 REMARK 465 LYS A 408 REMARK 465 VAL A 409 REMARK 465 PRO A 410 REMARK 465 VAL A 411 REMARK 465 VAL A 412 REMARK 465 ILE A 430 REMARK 465 SER A 431 REMARK 465 LYS A 432 REMARK 465 PRO A 433 REMARK 465 THR A 434 REMARK 465 TRP A 435 REMARK 465 GLU A 436 REMARK 465 LEU A 453 REMARK 465 PHE A 454 REMARK 465 VAL A 455 REMARK 465 HIS A 456 REMARK 465 TYR A 457 REMARK 465 LYS A 458 REMARK 465 PHE A 459 REMARK 465 GLY A 460 REMARK 465 TRP A 461 REMARK 465 ALA A 462 REMARK 465 GLN A 463 REMARK 465 LYS A 464 REMARK 465 ILE A 465 REMARK 465 SER A 466 REMARK 465 LYS A 467 REMARK 465 PRO A 468 REMARK 465 ILE A 469 REMARK 465 THR A 470 REMARK 465 MET A 471 REMARK 465 HIS A 472 REMARK 465 LEU A 473 REMARK 465 GLN A 474 REMARK 465 MET A 475 REMARK 465 LEU A 476 REMARK 465 MET A 477 REMARK 465 GLU A 478 REMARK 465 VAL A 479 REMARK 465 VAL A 480 REMARK 465 PRO A 481 REMARK 465 PRO A 482 REMARK 465 GLU A 483 REMARK 465 GLU A 484 REMARK 465 ASP A 485 REMARK 465 PRO A 486 REMARK 465 GLU A 487 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 118 -53.50 -125.77 REMARK 500 GLN A 285 53.93 -90.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6YUP RELATED DB: PDB REMARK 900 RELATED ID: EMD-10933 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-10940 RELATED DB: EMDB REMARK 900 STRUCTURE OF HUMAN B(0,+)AT1 DBREF 6YV1 A 1 487 UNP P82251 BAT1_HUMAN 1 487 SEQRES 1 A 487 MET GLY ASP THR GLY LEU ARG LYS ARG ARG GLU ASP GLU SEQRES 2 A 487 LYS SER ILE GLN SER GLN GLU PRO LYS THR THR SER LEU SEQRES 3 A 487 GLN LYS GLU LEU GLY LEU ILE SER GLY ILE SER ILE ILE SEQRES 4 A 487 VAL GLY THR ILE ILE GLY SER GLY ILE PHE VAL SER PRO SEQRES 5 A 487 LYS SER VAL LEU SER ASN THR GLU ALA VAL GLY PRO CYS SEQRES 6 A 487 LEU ILE ILE TRP ALA ALA CYS GLY VAL LEU ALA THR LEU SEQRES 7 A 487 GLY ALA LEU CYS PHE ALA GLU LEU GLY THR MET ILE THR SEQRES 8 A 487 LYS SER GLY GLY GLU TYR PRO TYR LEU MET GLU ALA TYR SEQRES 9 A 487 GLY PRO ILE PRO ALA TYR LEU PHE SER TRP ALA SER LEU SEQRES 10 A 487 ILE VAL ILE LYS PRO THR SER PHE ALA ILE ILE CYS LEU SEQRES 11 A 487 SER PHE SER GLU TYR VAL CYS ALA PRO PHE TYR VAL GLY SEQRES 12 A 487 CYS LYS PRO PRO GLN ILE VAL VAL LYS CYS LEU ALA ALA SEQRES 13 A 487 ALA ALA ILE LEU PHE ILE SER THR VAL ASN SER LEU SER SEQRES 14 A 487 VAL ARG LEU GLY SER TYR VAL GLN ASN ILE PHE THR ALA SEQRES 15 A 487 ALA LYS LEU VAL ILE VAL ALA ILE ILE ILE ILE SER GLY SEQRES 16 A 487 LEU VAL LEU LEU ALA GLN GLY ASN THR LYS ASN PHE ASP SEQRES 17 A 487 ASN SER PHE GLU GLY ALA GLN LEU SER VAL GLY ALA ILE SEQRES 18 A 487 SER LEU ALA PHE TYR ASN GLY LEU TRP ALA TYR ASP GLY SEQRES 19 A 487 TRP ASN GLN LEU ASN TYR ILE THR GLU GLU LEU ARG ASN SEQRES 20 A 487 PRO TYR ARG ASN LEU PRO LEU ALA ILE ILE ILE GLY ILE SEQRES 21 A 487 PRO LEU VAL THR ALA CYS TYR ILE LEU MET ASN VAL SER SEQRES 22 A 487 TYR PHE THR VAL MET THR ALA THR GLU LEU LEU GLN SER SEQRES 23 A 487 GLN ALA VAL ALA VAL THR PHE GLY ASP ARG VAL LEU TYR SEQRES 24 A 487 PRO ALA SER TRP ILE VAL PRO LEU PHE VAL ALA PHE SER SEQRES 25 A 487 THR ILE GLY ALA ALA ASN GLY THR CYS PHE THR ALA GLY SEQRES 26 A 487 ARG LEU ILE TYR VAL ALA GLY ARG GLU GLY HIS MET LEU SEQRES 27 A 487 LYS VAL LEU SER TYR ILE SER VAL ARG ARG LEU THR PRO SEQRES 28 A 487 ALA PRO ALA ILE ILE PHE TYR GLY ILE ILE ALA THR ILE SEQRES 29 A 487 TYR ILE ILE PRO GLY ASP ILE ASN SER LEU VAL ASN TYR SEQRES 30 A 487 PHE SER PHE ALA ALA TRP LEU PHE TYR GLY LEU THR ILE SEQRES 31 A 487 LEU GLY LEU ILE VAL MET ARG PHE THR ARG LYS GLU LEU SEQRES 32 A 487 GLU ARG PRO ILE LYS VAL PRO VAL VAL ILE PRO VAL LEU SEQRES 33 A 487 MET THR LEU ILE SER VAL PHE LEU VAL LEU ALA PRO ILE SEQRES 34 A 487 ILE SER LYS PRO THR TRP GLU TYR LEU TYR CYS VAL LEU SEQRES 35 A 487 PHE ILE LEU SER GLY LEU LEU PHE TYR PHE LEU PHE VAL SEQRES 36 A 487 HIS TYR LYS PHE GLY TRP ALA GLN LYS ILE SER LYS PRO SEQRES 37 A 487 ILE THR MET HIS LEU GLN MET LEU MET GLU VAL VAL PRO SEQRES 38 A 487 PRO GLU GLU ASP PRO GLU HELIX 1 AA1 GLY A 31 THR A 42 1 12 HELIX 2 AA2 VAL A 50 GLU A 60 1 11 HELIX 3 AA3 VAL A 62 GLY A 87 1 26 HELIX 4 AA4 ILE A 107 SER A 116 1 10 HELIX 5 AA5 ILE A 120 CYS A 137 1 18 HELIX 6 AA6 PRO A 147 SER A 167 1 21 HELIX 7 AA7 ILE A 179 VAL A 197 1 19 HELIX 8 AA8 ALA A 220 TRP A 230 1 11 HELIX 9 AA9 LEU A 238 THR A 242 5 5 HELIX 10 AB1 PRO A 253 ILE A 258 1 6 HELIX 11 AB2 GLY A 259 THR A 276 1 18 HELIX 12 AB3 THR A 279 GLN A 285 1 7 HELIX 13 AB4 ALA A 288 VAL A 297 1 10 HELIX 14 AB5 TRP A 303 ALA A 317 1 15 HELIX 15 AB6 ALA A 352 ILE A 361 1 10 HELIX 16 AB7 ALA A 362 ILE A 366 5 5 HELIX 17 AB8 ASP A 370 VAL A 395 1 26 HELIX 18 AB9 PRO A 414 ALA A 427 1 14 HELIX 19 AC1 CYS A 440 LEU A 445 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000