HEADER OXIDOREDUCTASE 29-APR-20 6YW0 TITLE LYSINE-N,N-DIMETHYLATED HIF PROLYL HYDROXYLASE 2 (PHD2/ EGLN1) IN TITLE 2 COMPLEX WITH BB-287 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGL NINE HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE 2,HPH-2,PROLYL COMPND 5 HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2,PHD2,SM-20; COMPND 6 EC: 1.14.11.29; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: CATALYTIC DOMAIN (AA 181-426) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGLN1, C1ORF12, PNAS-118, PNAS-137; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS OXIDOREDUCTASE, NON-HEME DIOXYGENASE, IRON, 2-OXOGLUTARATE, HYPOXIA- KEYWDS 2 INDUCIBLE FACTOR, HIF, HIF PROLYL HYDROXYLASE DOMAIN 2, PHD2, EGLN1, KEYWDS 3 OXYGENASE, HYPOXIA, DNA-BINDING, METAL-BINDING, TRANSCRIPTION, KEYWDS 4 HELIX-LOOP-HELIX-BETA, DSBH, FACIAL TRIAD, CYTOPLASM, KEYWDS 5 TRANSCRIPTION/EPIGENETIC REGULATION, SIGNALING, DEVELOPMENT, CELL KEYWDS 6 STRUCTURE, BETA-HYDROXYLATION, TRANSCRIPTION ACTIVATOR/INHIBITOR, KEYWDS 7 UBL CONJUGATION, POLYMORPHISM, VITAMIN C, ZINC-FINGER, FAMILIAL KEYWDS 8 ERYTHROCYTOSIS, BREAST CANCER, TRANSCRIPTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.CHOWDHURY,C.J.SCHOFIELD REVDAT 3 24-JAN-24 6YW0 1 REMARK REVDAT 2 20-JAN-21 6YW0 1 REMARK REVDAT 1 30-DEC-20 6YW0 0 JRNL AUTH R.CHOWDHURY,M.I.ABBOUD,T.E.MCALLISTER,B.BANERJI,B.BHUSHAN, JRNL AUTH 2 J.L.SORENSEN,A.KAWAMURA,C.J.SCHOFIELD JRNL TITL USE OF CYCLIC PEPTIDES TO INDUCE CRYSTALLIZATION: CASE STUDY JRNL TITL 2 WITH PROLYL HYDROXYLASE DOMAIN 2. JRNL REF SCI REP V. 10 21964 2020 JRNL REFN ESSN 2045-2322 JRNL PMID 33319810 JRNL DOI 10.1038/S41598-020-76307-8 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.CHOWDHURY,J.I.CANDELA-LENA,M.C.CHAN,D.J.GREENALD,K.K.YEOH, REMARK 1 AUTH 2 Y.M.TIAN,M.A.MCDONOUGH,A.TUMBER,N.R.ROSE,A.CONEJO-GARCIA, REMARK 1 AUTH 3 M.DEMETRIADES,S.MATHAVAN,A.KAWAMURA,M.K.LEE,F.VAN EEDEN, REMARK 1 AUTH 4 C.W.PUGH,P.J.RATCLIFFE,C.J.SCHOFIELD REMARK 1 TITL SELECTIVE SMALL MOLECULE PROBES FOR THE HYPOXIA INDUCIBLE REMARK 1 TITL 2 FACTOR (HIF) PROLYL HYDROXYLASES. REMARK 1 REF ACS CHEM. BIOL. V. 8 1488 2013 REMARK 1 REFN ESSN 1554-8937 REMARK 1 DOI 10.1021/CB400088Q REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 14413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 723 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.0220 - 3.7602 1.00 2818 147 0.1477 0.1767 REMARK 3 2 3.7602 - 2.9853 1.00 2744 148 0.1898 0.2149 REMARK 3 3 2.9853 - 2.6081 1.00 2721 145 0.2382 0.2522 REMARK 3 4 2.6081 - 2.3697 1.00 2709 144 0.2771 0.3209 REMARK 3 5 2.3697 - 2.2000 1.00 2698 139 0.3195 0.3591 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 63.50 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1819 REMARK 3 ANGLE : 0.851 2464 REMARK 3 CHIRALITY : 0.051 257 REMARK 3 PLANARITY : 0.005 314 REMARK 3 DIHEDRAL : 9.594 1389 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 188:204) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6902 33.8149 1.4451 REMARK 3 T TENSOR REMARK 3 T11: 0.5524 T22: 0.6637 REMARK 3 T33: 0.8285 T12: 0.0898 REMARK 3 T13: -0.1662 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.1639 L22: 0.2990 REMARK 3 L33: 0.1411 L12: -0.1818 REMARK 3 L13: -0.1739 L23: 0.1839 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: -0.0344 S13: -0.1680 REMARK 3 S21: -0.0514 S22: -0.0067 S23: -1.2790 REMARK 3 S31: 0.1647 S32: -0.1988 S33: 0.0512 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 205:215) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7582 32.7421 0.0433 REMARK 3 T TENSOR REMARK 3 T11: 0.7164 T22: 0.4186 REMARK 3 T33: 0.5994 T12: 0.1353 REMARK 3 T13: -0.1279 T23: -0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.6456 L22: 0.1978 REMARK 3 L33: 1.1661 L12: 0.1374 REMARK 3 L13: 0.8326 L23: 0.2266 REMARK 3 S TENSOR REMARK 3 S11: 0.3458 S12: 0.0598 S13: -0.7804 REMARK 3 S21: 0.2980 S22: 0.2588 S23: -0.5467 REMARK 3 S31: 0.5802 S32: 0.5872 S33: 0.3479 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 216:232) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7283 34.0382 11.7088 REMARK 3 T TENSOR REMARK 3 T11: 0.8737 T22: 0.5251 REMARK 3 T33: 0.7243 T12: -0.1180 REMARK 3 T13: 0.0901 T23: 0.1032 REMARK 3 L TENSOR REMARK 3 L11: 0.2697 L22: 0.1231 REMARK 3 L33: -0.0062 L12: 0.0693 REMARK 3 L13: -0.0329 L23: -0.0672 REMARK 3 S TENSOR REMARK 3 S11: 0.3002 S12: -0.2508 S13: -0.7521 REMARK 3 S21: 0.8629 S22: -0.3871 S23: 0.6316 REMARK 3 S31: 0.7511 S32: -0.2743 S33: -0.0041 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 233:266) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0262 47.7949 2.5415 REMARK 3 T TENSOR REMARK 3 T11: 0.5203 T22: 0.4480 REMARK 3 T33: 0.7506 T12: 0.0280 REMARK 3 T13: -0.0586 T23: -0.0603 REMARK 3 L TENSOR REMARK 3 L11: 0.3254 L22: 0.5910 REMARK 3 L33: 0.5366 L12: 0.1240 REMARK 3 L13: -0.2851 L23: -0.2066 REMARK 3 S TENSOR REMARK 3 S11: -0.0736 S12: -0.4381 S13: 0.4807 REMARK 3 S21: 0.4138 S22: -0.3135 S23: 0.9955 REMARK 3 S31: -0.0411 S32: -0.4346 S33: -0.0764 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 267:283) REMARK 3 ORIGIN FOR THE GROUP (A): 7.4402 40.2376 11.4301 REMARK 3 T TENSOR REMARK 3 T11: 0.7049 T22: 0.5488 REMARK 3 T33: 0.4683 T12: 0.1029 REMARK 3 T13: -0.2242 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 0.3941 L22: 0.5874 REMARK 3 L33: 0.4382 L12: -0.1876 REMARK 3 L13: 0.1313 L23: 0.4230 REMARK 3 S TENSOR REMARK 3 S11: 0.1481 S12: -0.5015 S13: -0.1335 REMARK 3 S21: 0.9700 S22: 0.0604 S23: -0.6699 REMARK 3 S31: 0.5346 S32: 0.0371 S33: 0.0664 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 284:293) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4831 47.4745 2.1786 REMARK 3 T TENSOR REMARK 3 T11: 0.5808 T22: 0.4984 REMARK 3 T33: 0.9358 T12: -0.0883 REMARK 3 T13: -0.0625 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.2414 L22: 0.0590 REMARK 3 L33: 0.1770 L12: -0.0321 REMARK 3 L13: -0.1473 L23: -0.0307 REMARK 3 S TENSOR REMARK 3 S11: -0.3445 S12: -0.2177 S13: -0.2833 REMARK 3 S21: -0.7222 S22: -0.4864 S23: -0.9504 REMARK 3 S31: -0.4841 S32: -0.0662 S33: -0.0157 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 294:306) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5641 44.6873 2.9542 REMARK 3 T TENSOR REMARK 3 T11: 0.4583 T22: 0.3927 REMARK 3 T33: 0.4825 T12: -0.0332 REMARK 3 T13: -0.0778 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 0.4851 L22: 0.6353 REMARK 3 L33: 0.4888 L12: -0.1584 REMARK 3 L13: -0.5127 L23: -0.1429 REMARK 3 S TENSOR REMARK 3 S11: -0.0645 S12: -0.2983 S13: -0.0559 REMARK 3 S21: 0.3932 S22: 0.1971 S23: 0.5011 REMARK 3 S31: -0.1774 S32: -0.0139 S33: 0.0171 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 307:320) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2412 49.1111 -8.7077 REMARK 3 T TENSOR REMARK 3 T11: 0.5636 T22: 0.3645 REMARK 3 T33: 0.3735 T12: -0.0025 REMARK 3 T13: -0.1976 T23: 0.0573 REMARK 3 L TENSOR REMARK 3 L11: 1.1539 L22: 0.8399 REMARK 3 L33: 0.2554 L12: -0.2475 REMARK 3 L13: -0.2641 L23: 0.5074 REMARK 3 S TENSOR REMARK 3 S11: -0.0447 S12: 0.1226 S13: 0.8843 REMARK 3 S21: -0.8727 S22: -0.0624 S23: 0.4726 REMARK 3 S31: -0.2961 S32: -0.0668 S33: 0.0750 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 321:335) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7400 36.7008 0.3960 REMARK 3 T TENSOR REMARK 3 T11: 0.4870 T22: 0.2935 REMARK 3 T33: 0.4619 T12: -0.0189 REMARK 3 T13: -0.1998 T23: 0.0590 REMARK 3 L TENSOR REMARK 3 L11: 0.4522 L22: 0.4071 REMARK 3 L33: 0.9476 L12: -0.5312 REMARK 3 L13: -0.2655 L23: 0.1125 REMARK 3 S TENSOR REMARK 3 S11: 0.0566 S12: 0.0732 S13: -0.2109 REMARK 3 S21: -0.2216 S22: 0.1464 S23: 0.1765 REMARK 3 S31: 0.4498 S32: 0.1984 S33: 0.2902 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 336:350) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1692 36.2719 -12.4192 REMARK 3 T TENSOR REMARK 3 T11: 0.7914 T22: 0.4289 REMARK 3 T33: 0.5328 T12: -0.0743 REMARK 3 T13: -0.0501 T23: -0.0717 REMARK 3 L TENSOR REMARK 3 L11: 0.2220 L22: 0.1726 REMARK 3 L33: 0.1048 L12: -0.1108 REMARK 3 L13: -0.0815 L23: 0.2444 REMARK 3 S TENSOR REMARK 3 S11: 0.1790 S12: 0.6725 S13: -0.8566 REMARK 3 S21: -0.7826 S22: 0.0684 S23: -0.3549 REMARK 3 S31: 0.1642 S32: 0.2600 S33: 0.0414 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 351:361) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5899 32.1402 -6.9602 REMARK 3 T TENSOR REMARK 3 T11: 0.6242 T22: 0.4037 REMARK 3 T33: 0.4648 T12: -0.0148 REMARK 3 T13: -0.0771 T23: -0.0858 REMARK 3 L TENSOR REMARK 3 L11: 0.1621 L22: 0.2885 REMARK 3 L33: 0.0294 L12: -0.2226 REMARK 3 L13: -0.0223 L23: 0.0021 REMARK 3 S TENSOR REMARK 3 S11: -0.1848 S12: 0.6358 S13: -1.1591 REMARK 3 S21: -0.1126 S22: -0.0739 S23: -0.0934 REMARK 3 S31: 0.3435 S32: -0.0630 S33: 0.0596 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 362:371) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5558 42.5556 -5.0972 REMARK 3 T TENSOR REMARK 3 T11: 0.4841 T22: 0.3252 REMARK 3 T33: 0.3877 T12: 0.0586 REMARK 3 T13: -0.0264 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.2666 L22: 0.1055 REMARK 3 L33: 0.0420 L12: -0.0012 REMARK 3 L13: 0.0175 L23: 0.0986 REMARK 3 S TENSOR REMARK 3 S11: 0.3177 S12: 0.0800 S13: -0.0672 REMARK 3 S21: -0.3862 S22: -0.1955 S23: -0.0638 REMARK 3 S31: 0.3440 S32: -0.0917 S33: 0.0142 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 372:381) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7595 39.1470 -10.0554 REMARK 3 T TENSOR REMARK 3 T11: 0.5876 T22: 0.3268 REMARK 3 T33: 0.4569 T12: -0.1465 REMARK 3 T13: -0.4183 T23: -0.1106 REMARK 3 L TENSOR REMARK 3 L11: 0.4375 L22: 0.3680 REMARK 3 L33: -0.0317 L12: 0.1261 REMARK 3 L13: 0.0041 L23: -0.0855 REMARK 3 S TENSOR REMARK 3 S11: 0.1441 S12: 1.1288 S13: -0.1396 REMARK 3 S21: -1.2855 S22: -0.1753 S23: 0.1640 REMARK 3 S31: 0.2327 S32: 0.2515 S33: -0.4050 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 382:392) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3005 43.8299 2.3233 REMARK 3 T TENSOR REMARK 3 T11: 0.4334 T22: 0.2957 REMARK 3 T33: 0.3874 T12: -0.0448 REMARK 3 T13: -0.0871 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.2111 L22: 0.3223 REMARK 3 L33: -0.0790 L12: -0.3572 REMARK 3 L13: -0.1673 L23: 0.2211 REMARK 3 S TENSOR REMARK 3 S11: 0.3170 S12: 0.0047 S13: -0.2547 REMARK 3 S21: 0.3225 S22: -0.1506 S23: -0.2024 REMARK 3 S31: 0.1625 S32: 0.1278 S33: -0.0001 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 393:403) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0861 61.1724 0.7369 REMARK 3 T TENSOR REMARK 3 T11: 0.4658 T22: 0.5134 REMARK 3 T33: 0.6163 T12: -0.0731 REMARK 3 T13: -0.0582 T23: -0.0602 REMARK 3 L TENSOR REMARK 3 L11: 0.0313 L22: 0.0943 REMARK 3 L33: 0.0796 L12: 0.0495 REMARK 3 L13: 0.0137 L23: 0.0084 REMARK 3 S TENSOR REMARK 3 S11: -0.3631 S12: -0.1256 S13: -0.2911 REMARK 3 S21: -0.2991 S22: 0.1457 S23: -0.2197 REMARK 3 S31: -0.1863 S32: -0.3604 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YW0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292108410. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : PT COATED MIRRORS IN A REMARK 200 KIRKPATRICK-BAEZ (KB) GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14427 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 36.309 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.17700 REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.80 REMARK 200 R MERGE FOR SHELL (I) : 2.03700 REMARK 200 R SYM FOR SHELL (I) : 2.03700 REMARK 200 FOR SHELL : 1.740 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2G19 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SAMPLE: 18 MG/ML PHD2-ME + 1 MM FESO4 REMARK 280 + 2 MM COMPOUND; RESERVOIR: 1.7% POLYETHYLENE GLYCOL 400, 15% REMARK 280 GLYCEROL, 1.7 M AMMONIUM SULPHATE AND 0.085 M HEPES-NA PH 7.5; REMARK 280 SITTING DROP (2 UL), PROTEIN-TO-WELL RATIO, 1:1, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.83000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.83000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.83000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 HIS A 177 REMARK 465 MET A 178 REMARK 465 ALA A 179 REMARK 465 SER A 180 REMARK 465 PRO A 181 REMARK 465 ASN A 182 REMARK 465 GLY A 183 REMARK 465 GLN A 184 REMARK 465 THR A 185 REMARK 465 MLY A 186 REMARK 465 PRO A 187 REMARK 465 GLY A 406 REMARK 465 GLU A 407 REMARK 465 MLY A 408 REMARK 465 GLY A 409 REMARK 465 VAL A 410 REMARK 465 ASN A 415 REMARK 465 MLY A 416 REMARK 465 PRO A 417 REMARK 465 SER A 418 REMARK 465 ASP A 419 REMARK 465 SER A 420 REMARK 465 VAL A 421 REMARK 465 GLY A 422 REMARK 465 MLY A 423 REMARK 465 ASP A 424 REMARK 465 VAL A 425 REMARK 465 PHE A 426 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MLY A 244 CG CD CE NZ CH1 CH2 REMARK 470 ASP A 246 CG OD1 OD2 REMARK 470 SER A 247 OG REMARK 470 MLY A 249 CG CD CE NZ CH1 CH2 REMARK 470 ASP A 250 CG OD1 OD2 REMARK 470 ASN A 284 CG OD1 ND2 REMARK 470 MLY A 337 CE NZ CH1 CH2 REMARK 470 GLN A 352 CG CD OE1 NE2 REMARK 470 TYR A 403 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 404 CG CD1 CD2 REMARK 470 THR A 405 OG1 CG2 REMARK 470 ARG A 411 CZ NH1 NH2 REMARK 470 GLU A 413 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 197 -56.12 -131.17 REMARK 500 PHE A 346 77.24 -112.60 REMARK 500 ASP A 369 -157.26 -88.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 313 NE2 REMARK 620 2 ASP A 315 OD1 91.8 REMARK 620 3 HIS A 374 NE2 88.8 87.7 REMARK 620 4 2JP A 502 O2 96.9 170.3 88.3 REMARK 620 5 2JP A 502 N1 86.8 106.9 164.9 77.9 REMARK 620 6 HOH A 623 O 175.1 87.7 96.0 84.0 88.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2JP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4BQW RELATED DB: PDB REMARK 900 RELATED ID: 4BQX RELATED DB: PDB REMARK 900 RELATED ID: 4BQY RELATED DB: PDB REMARK 900 RELATED ID: 6YVW RELATED DB: PDB REMARK 900 RELATED ID: 6YVX RELATED DB: PDB REMARK 900 RELATED ID: 6YVZ RELATED DB: PDB DBREF 6YW0 A 181 426 UNP Q9GZT9 EGLN1_HUMAN 181 426 SEQADV 6YW0 GLY A 175 UNP Q9GZT9 EXPRESSION TAG SEQADV 6YW0 SER A 176 UNP Q9GZT9 EXPRESSION TAG SEQADV 6YW0 HIS A 177 UNP Q9GZT9 EXPRESSION TAG SEQADV 6YW0 MET A 178 UNP Q9GZT9 EXPRESSION TAG SEQADV 6YW0 ALA A 179 UNP Q9GZT9 EXPRESSION TAG SEQADV 6YW0 SER A 180 UNP Q9GZT9 EXPRESSION TAG SEQRES 1 A 252 GLY SER HIS MET ALA SER PRO ASN GLY GLN THR MLY PRO SEQRES 2 A 252 LEU PRO ALA LEU MLY LEU ALA LEU GLU TYR ILE VAL PRO SEQRES 3 A 252 CYS MET ASN MLY HIS GLY ILE CYS VAL VAL ASP ASP PHE SEQRES 4 A 252 LEU GLY MLY GLU THR GLY GLN GLN ILE GLY ASP GLU VAL SEQRES 5 A 252 ARG ALA LEU HIS ASP THR GLY MLY PHE THR ASP GLY GLN SEQRES 6 A 252 LEU VAL SER GLN MLY SER ASP SER SER MLY ASP ILE ARG SEQRES 7 A 252 GLY ASP MLY ILE THR TRP ILE GLU GLY MLY GLU PRO GLY SEQRES 8 A 252 CYS GLU THR ILE GLY LEU LEU MET SER SER MET ASP ASP SEQRES 9 A 252 LEU ILE ARG HIS CYS ASN GLY MLY LEU GLY SER TYR MLY SEQRES 10 A 252 ILE ASN GLY ARG THR MLY ALA MET VAL ALA CYS TYR PRO SEQRES 11 A 252 GLY ASN GLY THR GLY TYR VAL ARG HIS VAL ASP ASN PRO SEQRES 12 A 252 ASN GLY ASP GLY ARG CYS VAL THR CYS ILE TYR TYR LEU SEQRES 13 A 252 ASN MLY ASP TRP ASP ALA MLY VAL SER GLY GLY ILE LEU SEQRES 14 A 252 ARG ILE PHE PRO GLU GLY MLY ALA GLN PHE ALA ASP ILE SEQRES 15 A 252 GLU PRO MLY PHE ASP ARG LEU LEU PHE PHE TRP SER ASP SEQRES 16 A 252 ARG ARG ASN PRO HIS GLU VAL GLN PRO ALA TYR ALA THR SEQRES 17 A 252 ARG TYR ALA ILE THR VAL TRP TYR PHE ASP ALA ASP GLU SEQRES 18 A 252 ARG ALA ARG ALA MLY VAL MLY TYR LEU THR GLY GLU MLY SEQRES 19 A 252 GLY VAL ARG VAL GLU LEU ASN MLY PRO SER ASP SER VAL SEQRES 20 A 252 GLY MLY ASP VAL PHE MODRES 6YW0 MLY A 192 LYS MODIFIED RESIDUE MODRES 6YW0 MLY A 204 LYS MODIFIED RESIDUE MODRES 6YW0 MLY A 216 LYS MODIFIED RESIDUE MODRES 6YW0 MLY A 234 LYS MODIFIED RESIDUE MODRES 6YW0 MLY A 244 LYS MODIFIED RESIDUE MODRES 6YW0 MLY A 249 LYS MODIFIED RESIDUE MODRES 6YW0 MLY A 255 LYS MODIFIED RESIDUE MODRES 6YW0 MLY A 262 LYS MODIFIED RESIDUE MODRES 6YW0 MLY A 286 LYS MODIFIED RESIDUE MODRES 6YW0 MLY A 291 LYS MODIFIED RESIDUE MODRES 6YW0 MLY A 297 LYS MODIFIED RESIDUE MODRES 6YW0 MLY A 332 LYS MODIFIED RESIDUE MODRES 6YW0 MLY A 337 LYS MODIFIED RESIDUE MODRES 6YW0 MLY A 350 LYS MODIFIED RESIDUE MODRES 6YW0 MLY A 359 LYS MODIFIED RESIDUE MODRES 6YW0 MLY A 400 LYS MODIFIED RESIDUE MODRES 6YW0 MLY A 402 LYS MODIFIED RESIDUE HET MLY A 192 27 HET MLY A 204 27 HET MLY A 216 27 HET MLY A 234 27 HET MLY A 244 6 HET MLY A 249 6 HET MLY A 255 26 HET MLY A 262 26 HET MLY A 286 26 HET MLY A 291 26 HET MLY A 297 27 HET MLY A 332 27 HET MLY A 337 13 HET MLY A 350 26 HET MLY A 359 27 HET MLY A 400 27 HET MLY A 402 27 HET FE A 501 1 HET 2JP A 502 29 HET BCT A 503 5 HETNAM MLY N-DIMETHYL-LYSINE HETNAM FE FE (III) ION HETNAM 2JP 4-(ISOQUINOLIN-3-YLAMINO)-4-OXOBUTANOIC ACID HETNAM BCT BICARBONATE ION FORMUL 1 MLY 17(C8 H18 N2 O2) FORMUL 2 FE FE 3+ FORMUL 3 2JP C13 H12 N2 O3 FORMUL 4 BCT C H O3 1- FORMUL 5 HOH *63(H2 O) HELIX 1 AA1 PRO A 189 TYR A 197 1 9 HELIX 2 AA2 TYR A 197 GLY A 206 1 10 HELIX 3 AA3 GLY A 215 GLY A 233 1 19 HELIX 4 AA4 ASP A 246 ASP A 250 5 5 HELIX 5 AA5 CYS A 266 CYS A 283 1 18 HELIX 6 AA6 ASP A 335 GLY A 340 1 6 HELIX 7 AA7 ALA A 393 MLY A 400 1 8 HELIX 8 AA8 VAL A 401 LEU A 404 5 4 SHEET 1 AA1 6 ILE A 207 ASP A 211 0 SHEET 2 AA1 6 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA1 6 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA1 6 ARG A 383 ASP A 392 -1 O VAL A 388 N CYS A 326 SHEET 5 AA1 6 ALA A 298 TYR A 303 -1 N TYR A 303 O ARG A 383 SHEET 6 AA1 6 MLY A 255 ILE A 259 -1 N THR A 257 O VAL A 300 SHEET 1 AA2 5 ILE A 207 ASP A 211 0 SHEET 2 AA2 5 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 AA2 5 ARG A 322 TYR A 329 -1 N THR A 325 O PHE A 366 SHEET 4 AA2 5 ARG A 383 ASP A 392 -1 O VAL A 388 N CYS A 326 SHEET 5 AA2 5 ILE A 292 ARG A 295 -1 N GLY A 294 O PHE A 391 SHEET 1 AA3 2 LEU A 240 SER A 242 0 SHEET 2 AA3 2 ILE A 251 ARG A 252 -1 O ILE A 251 N VAL A 241 SHEET 1 AA4 4 TYR A 310 HIS A 313 0 SHEET 2 AA4 4 HIS A 374 VAL A 376 -1 O VAL A 376 N TYR A 310 SHEET 3 AA4 4 LEU A 343 ILE A 345 -1 N ARG A 344 O GLU A 375 SHEET 4 AA4 4 ALA A 354 ILE A 356 -1 O ILE A 356 N LEU A 343 SSBOND 1 CYS A 201 CYS A 208 1555 1555 2.03 LINK C LEU A 191 N MLY A 192 1555 1555 1.33 LINK C MLY A 192 N LEU A 193 1555 1555 1.33 LINK C ASN A 203 N MLY A 204 1555 1555 1.33 LINK C MLY A 204 N HIS A 205 1555 1555 1.33 LINK C GLY A 215 N MLY A 216 1555 1555 1.33 LINK C MLY A 216 N GLU A 217 1555 1555 1.33 LINK C GLY A 233 N MLY A 234 1555 1555 1.33 LINK C MLY A 234 N PHE A 235 1555 1555 1.33 LINK C GLN A 243 N MLY A 244 1555 1555 1.33 LINK C MLY A 244 N SER A 245 1555 1555 1.31 LINK C SER A 248 N MLY A 249 1555 1555 1.33 LINK C MLY A 249 N ASP A 250 1555 1555 1.33 LINK C ASP A 254 N MLY A 255 1555 1555 1.33 LINK C MLY A 255 N ILE A 256 1555 1555 1.33 LINK C GLY A 261 N MLY A 262 1555 1555 1.33 LINK C MLY A 262 N GLU A 263 1555 1555 1.33 LINK C GLY A 285 N MLY A 286 1555 1555 1.33 LINK C MLY A 286 N LEU A 287 1555 1555 1.33 LINK C TYR A 290 N MLY A 291 1555 1555 1.33 LINK C MLY A 291 N ILE A 292 1555 1555 1.33 LINK C THR A 296 N MLY A 297 1555 1555 1.33 LINK C MLY A 297 N ALA A 298 1555 1555 1.33 LINK C ASN A 331 N MLY A 332 1555 1555 1.33 LINK C MLY A 332 N ASP A 333 1555 1555 1.33 LINK C ALA A 336 N MLY A 337 1555 1555 1.33 LINK C MLY A 337 N VAL A 338 1555 1555 1.33 LINK C GLY A 349 N MLY A 350 1555 1555 1.33 LINK C MLY A 350 N ALA A 351 1555 1555 1.33 LINK C PRO A 358 N MLY A 359 1555 1555 1.33 LINK C MLY A 359 N PHE A 360 1555 1555 1.33 LINK C ALA A 399 N MLY A 400 1555 1555 1.33 LINK C MLY A 400 N VAL A 401 1555 1555 1.33 LINK C VAL A 401 N MLY A 402 1555 1555 1.33 LINK C MLY A 402 N TYR A 403 1555 1555 1.33 LINK NE2 HIS A 313 FE FE A 501 1555 1555 2.15 LINK OD1 ASP A 315 FE FE A 501 1555 1555 2.12 LINK NE2 HIS A 374 FE FE A 501 1555 1555 2.11 LINK FE FE A 501 O2 2JP A 502 1555 1555 2.05 LINK FE FE A 501 N1 2JP A 502 1555 1555 2.06 LINK FE FE A 501 O HOH A 623 1555 1555 2.35 SITE 1 AC1 5 HIS A 313 ASP A 315 HIS A 374 2JP A 502 SITE 2 AC1 5 HOH A 623 SITE 1 AC2 14 TYR A 310 HIS A 313 ASP A 315 ILE A 327 SITE 2 AC2 14 TYR A 329 HIS A 374 VAL A 376 ARG A 383 SITE 3 AC2 14 ALA A 385 VAL A 401 FE A 501 HOH A 623 SITE 4 AC2 14 HOH A 640 HOH A 644 SITE 1 AC3 3 MLY A 262 ARG A 312 PRO A 373 CRYST1 110.927 110.927 39.660 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009015 0.005205 0.000000 0.00000 SCALE2 0.000000 0.010410 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025215 0.00000