HEADER OXIDOREDUCTASE 29-APR-20 6YW2 TITLE HIF PROLYL HYDROXYLASE 2 (PHD2/ EGLN1) IN COMPLEX WITH BICYCLIC FG2216 TITLE 2 AND RAPID-DERIVED CYCLIC PEPTIDE 3C (14-MER) COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGL NINE HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE 2,HPH-2,PROLYL COMPND 5 HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2,PHD2,SM-20; COMPND 6 EC: 1.14.11.29; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: CATALYTIC DOMAIN (AA 181-407); COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PHD2-SPECIFIC RAPID CYCLIC PEPTIDE 3C (14-MER); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EGLN1, C1ORF12, PNAS-118, PNAS-137; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A(+); SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS OXIDOREDUCTASE, NON-HEME DIOXYGENASE, IRON, 2-OXOGLUTARATE, HYPOXIA- KEYWDS 2 INDUCIBLE FACTOR, HIF, HIF PROLYL HYDROXYLASE DOMAIN 2, PHD2, EGLN1, KEYWDS 3 OXYGENASE, HYPOXIA, DNA-BINDING, METAL-BINDING, TRANSCRIPTION, KEYWDS 4 HELIX-LOOP-HELIX-BETA, DSBH, FACIAL TRIAD, CYTOPLASM, KEYWDS 5 TRANSCRIPTION/EPIGENETIC REGULATION, SIGNALING, DEVELOPMENT, CELL KEYWDS 6 STRUCTURE, BETA-HYDROXYLATION, TRANSCRIPTION ACTIVATOR/INHIBITOR, KEYWDS 7 UBL CONJUGATION, POLYMORPHISM, VITAMIN C, ZINC-FINGER, FAMILIAL KEYWDS 8 ERYTHROCYTOSIS, BREAST CANCER, TRANSCRIPTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.CHOWDHURY,C.J.SCHOFIELD REVDAT 2 24-JAN-24 6YW2 1 REMARK REVDAT 1 30-DEC-20 6YW2 0 JRNL AUTH R.CHOWDHURY,M.I.ABBOUD,T.E.MCALLISTER,B.BANERJI,B.BHUSHAN, JRNL AUTH 2 J.L.SORENSEN,A.KAWAMURA,C.J.SCHOFIELD JRNL TITL USE OF CYCLIC PEPTIDES TO INDUCE CRYSTALLIZATION: CASE STUDY JRNL TITL 2 WITH PROLYL HYDROXYLASE DOMAIN 2. JRNL REF SCI REP V. 10 21964 2020 JRNL REFN ESSN 2045-2322 JRNL PMID 33319810 JRNL DOI 10.1038/S41598-020-76307-8 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.CHOWDHURY,I.K.LEUNG,Y.M.TIAN,M.I.ABBOUD,W.GE,C.DOMENE, REMARK 1 AUTH 2 F.X.CANTRELLE,I.LANDRIEU,A.P.HARDY,C.W.PUGH,P.J.RATCLIFFE, REMARK 1 AUTH 3 T.D.CLARIDGE,C.J.SCHOFIELD REMARK 1 TITL STRUCTURAL BASIS FOR OXYGEN DEGRADATION DOMAIN SELECTIVITY REMARK 1 TITL 2 OF THE HIF PROLYL HYDROXYLASES. REMARK 1 REF NAT COMMUN V. 7 12673 2016 REMARK 1 REFN ESSN 2041-1723 REMARK 1 DOI 10.1038/NCOMMS12673 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.670 REMARK 3 FREE R VALUE TEST SET COUNT : 626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.1910 - 4.6083 1.00 1272 69 0.1495 0.1555 REMARK 3 2 4.6083 - 3.6588 1.00 1286 73 0.1329 0.1689 REMARK 3 3 3.6588 - 3.1966 1.00 1276 56 0.1497 0.1901 REMARK 3 4 3.1966 - 2.9044 1.00 1276 63 0.1766 0.2298 REMARK 3 5 2.9044 - 2.6963 1.00 1283 68 0.2023 0.2271 REMARK 3 6 2.6963 - 2.5374 1.00 1285 48 0.2037 0.2314 REMARK 3 7 2.5374 - 2.4104 1.00 1273 59 0.2109 0.1951 REMARK 3 8 2.4104 - 2.3054 1.00 1242 71 0.2174 0.2937 REMARK 3 9 2.3054 - 2.2167 1.00 1307 50 0.2330 0.2532 REMARK 3 10 2.2167 - 2.1402 1.00 1293 69 0.2454 0.2838 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 48.80 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1805 REMARK 3 ANGLE : 1.047 2447 REMARK 3 CHIRALITY : 0.048 258 REMARK 3 PLANARITY : 0.004 314 REMARK 3 DIHEDRAL : 5.156 1038 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 188:204) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3344 61.6930 4.0467 REMARK 3 T TENSOR REMARK 3 T11: 0.3946 T22: 0.3282 REMARK 3 T33: 0.3510 T12: 0.0347 REMARK 3 T13: -0.0156 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 3.5121 L22: 3.8969 REMARK 3 L33: 2.7129 L12: 0.1480 REMARK 3 L13: -0.2790 L23: -0.1648 REMARK 3 S TENSOR REMARK 3 S11: 0.0070 S12: 0.0591 S13: 0.4207 REMARK 3 S21: 0.1161 S22: -0.1391 S23: 0.1217 REMARK 3 S31: -0.5253 S32: -0.3911 S33: -0.0487 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 205:215) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4381 54.5715 -0.0526 REMARK 3 T TENSOR REMARK 3 T11: 0.3093 T22: 0.4133 REMARK 3 T33: 0.3591 T12: 0.0249 REMARK 3 T13: 0.0261 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 2.3025 L22: 2.2710 REMARK 3 L33: 1.8963 L12: -0.8820 REMARK 3 L13: 0.6278 L23: -0.4243 REMARK 3 S TENSOR REMARK 3 S11: -0.0331 S12: 0.3437 S13: 0.2606 REMARK 3 S21: -0.1890 S22: -0.0169 S23: -0.0717 REMARK 3 S31: -0.0927 S32: -0.0450 S33: -0.0439 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 216:232) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2257 47.3052 0.1248 REMARK 3 T TENSOR REMARK 3 T11: 0.3672 T22: 0.6773 REMARK 3 T33: 0.6346 T12: -0.0572 REMARK 3 T13: 0.0659 T23: -0.0652 REMARK 3 L TENSOR REMARK 3 L11: 3.0533 L22: 3.7137 REMARK 3 L33: 4.0315 L12: 0.3550 REMARK 3 L13: 0.2071 L23: -0.2325 REMARK 3 S TENSOR REMARK 3 S11: 0.0429 S12: 0.4793 S13: 0.0591 REMARK 3 S21: -0.7700 S22: 0.3411 S23: -0.6268 REMARK 3 S31: 0.1867 S32: 0.6264 S33: -0.2555 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 233:266) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8305 41.6320 10.7750 REMARK 3 T TENSOR REMARK 3 T11: 0.3478 T22: 0.5427 REMARK 3 T33: 0.6121 T12: 0.0815 REMARK 3 T13: -0.0797 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 4.8915 L22: 3.4415 REMARK 3 L33: 5.7288 L12: -2.2735 REMARK 3 L13: 1.6632 L23: -0.1525 REMARK 3 S TENSOR REMARK 3 S11: 0.1041 S12: -0.1301 S13: -0.8793 REMARK 3 S21: 0.6784 S22: 0.4219 S23: -0.7279 REMARK 3 S31: 0.5516 S32: 0.5053 S33: -0.5312 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 267:283) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3719 58.3929 9.1981 REMARK 3 T TENSOR REMARK 3 T11: 0.4264 T22: 0.4423 REMARK 3 T33: 0.4487 T12: -0.1121 REMARK 3 T13: -0.0257 T23: -0.0402 REMARK 3 L TENSOR REMARK 3 L11: 3.3614 L22: 2.6604 REMARK 3 L33: 3.7878 L12: -0.8683 REMARK 3 L13: 0.1611 L23: -1.1118 REMARK 3 S TENSOR REMARK 3 S11: 0.1566 S12: -0.5124 S13: 0.5858 REMARK 3 S21: 0.2910 S22: -0.1045 S23: -0.7425 REMARK 3 S31: -0.5509 S32: 0.4114 S33: -0.0472 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 284:293) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4461 58.9474 17.0511 REMARK 3 T TENSOR REMARK 3 T11: 0.4876 T22: 0.4658 REMARK 3 T33: 0.4794 T12: 0.0075 REMARK 3 T13: 0.0007 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 3.8154 L22: 2.4050 REMARK 3 L33: 5.0157 L12: -1.5739 REMARK 3 L13: 2.1277 L23: -1.4782 REMARK 3 S TENSOR REMARK 3 S11: -0.0854 S12: -0.5701 S13: 0.1966 REMARK 3 S21: 0.1366 S22: 0.0981 S23: -0.0166 REMARK 3 S31: -0.8910 S32: -0.3674 S33: -0.0115 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 294:306) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0130 41.9560 8.3503 REMARK 3 T TENSOR REMARK 3 T11: 0.2848 T22: 0.3969 REMARK 3 T33: 0.3893 T12: 0.0160 REMARK 3 T13: -0.0112 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 0.5837 L22: 1.7997 REMARK 3 L33: 2.1448 L12: -0.5254 REMARK 3 L13: 0.4534 L23: 1.1730 REMARK 3 S TENSOR REMARK 3 S11: 0.0824 S12: -0.0476 S13: -0.0475 REMARK 3 S21: 0.3130 S22: 0.0407 S23: -0.4046 REMARK 3 S31: 0.3506 S32: 0.2742 S33: -0.0729 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 307:320) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1624 37.6104 11.8265 REMARK 3 T TENSOR REMARK 3 T11: 0.2821 T22: 0.3366 REMARK 3 T33: 0.3610 T12: -0.0442 REMARK 3 T13: -0.0216 T23: 0.0461 REMARK 3 L TENSOR REMARK 3 L11: 1.6656 L22: 2.5471 REMARK 3 L33: 3.9296 L12: -0.9874 REMARK 3 L13: -2.5486 L23: 1.1298 REMARK 3 S TENSOR REMARK 3 S11: -0.3289 S12: -0.1982 S13: -0.2314 REMARK 3 S21: 0.2839 S22: 0.0725 S23: 0.3873 REMARK 3 S31: 0.2371 S32: 0.3626 S33: 0.2842 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 321:335) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3154 46.8348 2.1115 REMARK 3 T TENSOR REMARK 3 T11: 0.2753 T22: 0.3958 REMARK 3 T33: 0.3082 T12: -0.0091 REMARK 3 T13: -0.0292 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.1638 L22: 4.5477 REMARK 3 L33: 0.6353 L12: -0.6234 REMARK 3 L13: -0.3152 L23: 1.6758 REMARK 3 S TENSOR REMARK 3 S11: -0.0420 S12: 0.0335 S13: -0.1446 REMARK 3 S21: -0.4537 S22: -0.0124 S23: -0.2439 REMARK 3 S31: -0.3806 S32: 0.0105 S33: -0.0315 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 336:350) REMARK 3 ORIGIN FOR THE GROUP (A): -2.6392 40.1530 -1.7227 REMARK 3 T TENSOR REMARK 3 T11: 0.3446 T22: 0.4186 REMARK 3 T33: 0.3851 T12: -0.0109 REMARK 3 T13: -0.0630 T23: -0.0682 REMARK 3 L TENSOR REMARK 3 L11: 3.3433 L22: 1.6441 REMARK 3 L33: 3.5872 L12: -0.5860 REMARK 3 L13: 0.2031 L23: 1.0883 REMARK 3 S TENSOR REMARK 3 S11: 0.1766 S12: 0.4678 S13: -0.7269 REMARK 3 S21: -0.2004 S22: -0.4030 S23: 0.3007 REMARK 3 S31: -0.1430 S32: -0.7824 S33: 0.1775 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 351:361) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5352 45.2656 -3.5185 REMARK 3 T TENSOR REMARK 3 T11: 0.4150 T22: 0.4255 REMARK 3 T33: 0.3138 T12: 0.0267 REMARK 3 T13: -0.0494 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 2.6938 L22: 3.1330 REMARK 3 L33: 3.7860 L12: 2.0965 REMARK 3 L13: -0.5783 L23: 0.2480 REMARK 3 S TENSOR REMARK 3 S11: -0.0474 S12: 1.7851 S13: 0.6692 REMARK 3 S21: -0.4032 S22: 0.1926 S23: 0.2759 REMARK 3 S31: 0.2569 S32: -0.6474 S33: -0.1284 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 362:371) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0518 48.3933 8.4895 REMARK 3 T TENSOR REMARK 3 T11: 0.3030 T22: 0.4422 REMARK 3 T33: 0.2748 T12: 0.0156 REMARK 3 T13: -0.0299 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 3.5500 L22: 1.9040 REMARK 3 L33: 2.1836 L12: -0.7875 REMARK 3 L13: 0.2673 L23: 1.2309 REMARK 3 S TENSOR REMARK 3 S11: 0.1860 S12: -0.1846 S13: -0.0838 REMARK 3 S21: -0.1206 S22: -0.0697 S23: -0.0129 REMARK 3 S31: -0.2302 S32: -0.1164 S33: -0.1476 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN A AND RESID 372:381) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5808 36.5885 1.1296 REMARK 3 T TENSOR REMARK 3 T11: 0.3655 T22: 0.2825 REMARK 3 T33: 0.3481 T12: -0.0023 REMARK 3 T13: -0.0476 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 2.6815 L22: 1.2215 REMARK 3 L33: 1.7398 L12: -0.8495 REMARK 3 L13: -0.8755 L23: 0.5027 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: 0.1593 S13: -0.2515 REMARK 3 S21: -0.1498 S22: 0.1135 S23: -0.0156 REMARK 3 S31: 0.5016 S32: -0.1479 S33: 0.0024 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN A AND RESID 382:392) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2524 46.4774 9.3444 REMARK 3 T TENSOR REMARK 3 T11: 0.2621 T22: 0.3186 REMARK 3 T33: 0.3682 T12: 0.0009 REMARK 3 T13: -0.0343 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 2.1135 L22: 3.9537 REMARK 3 L33: 3.5256 L12: -1.1205 REMARK 3 L13: -0.4430 L23: 2.0498 REMARK 3 S TENSOR REMARK 3 S11: 0.2990 S12: 0.0775 S13: 0.1234 REMARK 3 S21: 0.0311 S22: 0.1296 S23: -0.5309 REMARK 3 S31: -0.0787 S32: -0.1457 S33: -0.3929 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN A AND RESID 393:403) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2992 46.2017 26.9421 REMARK 3 T TENSOR REMARK 3 T11: 0.4529 T22: 0.4756 REMARK 3 T33: 0.3318 T12: -0.0142 REMARK 3 T13: 0.0311 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.0071 L22: 3.5940 REMARK 3 L33: 3.2037 L12: 1.0013 REMARK 3 L13: 0.4550 L23: -0.8750 REMARK 3 S TENSOR REMARK 3 S11: 0.1145 S12: 0.2284 S13: -0.0027 REMARK 3 S21: 0.0011 S22: 0.0109 S23: 0.3346 REMARK 3 S31: -0.4899 S32: -0.4772 S33: -0.1360 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292108412. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13502 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 39.994 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 15.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.16800 REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 15.80 REMARK 200 R MERGE FOR SHELL (I) : 1.34100 REMARK 200 R SYM FOR SHELL (I) : 1.34100 REMARK 200 FOR SHELL : 2.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5L9R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SAMPLE: 1.0 MM PHD2, 1.5 MM MNCL2, 2.0 REMARK 280 MM COMPOUND, 1.0 MM 3C; RESERVOIR: 22% W/V POLYETHYLENE GLYCOL REMARK 280 3350, 0.25 M MAGNESIUM FORMATE, 2 MM MNCL2; SITTING DROP (2 UL), REMARK 280 PROTEIN-TO-WELL RATIO, 1:1, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 134.84133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.42067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 101.13100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.71033 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 168.55167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 175 REMARK 465 SER A 176 REMARK 465 HIS A 177 REMARK 465 MET A 178 REMARK 465 ALA A 179 REMARK 465 SER A 180 REMARK 465 PRO A 181 REMARK 465 ASN A 182 REMARK 465 GLY A 183 REMARK 465 GLN A 184 REMARK 465 GLN A 239 REMARK 465 LEU A 240 REMARK 465 VAL A 241 REMARK 465 SER A 242 REMARK 465 GLN A 243 REMARK 465 LYS A 244 REMARK 465 SER A 245 REMARK 465 ASP A 246 REMARK 465 SER A 247 REMARK 465 SER A 248 REMARK 465 LYS A 249 REMARK 465 ASP A 250 REMARK 465 GLY A 406 REMARK 465 GLU A 407 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 185 CB OG1 CG2 REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 LYS A 192 CD CE NZ REMARK 470 LYS A 216 CD CE NZ REMARK 470 GLU A 217 CD OE1 OE2 REMARK 470 ASP A 237 CG OD1 OD2 REMARK 470 ILE A 251 CG1 CG2 CD1 REMARK 470 ARG A 252 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 LYS A 337 CD CE NZ REMARK 470 GLU A 348 CD OE1 OE2 REMARK 470 LYS A 350 CE NZ REMARK 470 GLN A 352 CG CD OE1 NE2 REMARK 470 THR A 405 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 312 O HOH A 601 1.51 REMARK 500 H1 48V B 0 C THR B 13 1.52 REMARK 500 O LYS A 186 HH DTY B 1 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 197 -59.08 -131.20 REMARK 500 PHE A 346 75.54 -115.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 313 NE2 REMARK 620 2 ASP A 315 OD1 91.8 REMARK 620 3 HIS A 374 NE2 87.6 91.7 REMARK 620 4 UN9 A 502 N8 87.0 106.2 161.4 REMARK 620 5 UN9 A 502 O13 100.7 167.1 85.4 78.2 REMARK 620 6 HOH A 604 O 176.1 85.6 95.4 91.0 82.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UN9 A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5L9B RELATED DB: PDB REMARK 900 RELATED ID: 5L9R RELATED DB: PDB REMARK 900 RELATED ID: 5L9V RELATED DB: PDB REMARK 900 RELATED ID: 4BQW RELATED DB: PDB REMARK 900 RELATED ID: 4BQX RELATED DB: PDB REMARK 900 RELATED ID: 4BQY RELATED DB: PDB DBREF 6YW2 A 181 407 UNP Q9GZT9 EGLN1_HUMAN 181 407 DBREF 6YW2 B 0 13 PDB 6YW2 6YW2 0 13 SEQADV 6YW2 GLY A 175 UNP Q9GZT9 EXPRESSION TAG SEQADV 6YW2 SER A 176 UNP Q9GZT9 EXPRESSION TAG SEQADV 6YW2 HIS A 177 UNP Q9GZT9 EXPRESSION TAG SEQADV 6YW2 MET A 178 UNP Q9GZT9 EXPRESSION TAG SEQADV 6YW2 ALA A 179 UNP Q9GZT9 EXPRESSION TAG SEQADV 6YW2 SER A 180 UNP Q9GZT9 EXPRESSION TAG SEQRES 1 A 233 GLY SER HIS MET ALA SER PRO ASN GLY GLN THR LYS PRO SEQRES 2 A 233 LEU PRO ALA LEU LYS LEU ALA LEU GLU TYR ILE VAL PRO SEQRES 3 A 233 CYS MET ASN LYS HIS GLY ILE CYS VAL VAL ASP ASP PHE SEQRES 4 A 233 LEU GLY LYS GLU THR GLY GLN GLN ILE GLY ASP GLU VAL SEQRES 5 A 233 ARG ALA LEU HIS ASP THR GLY LYS PHE THR ASP GLY GLN SEQRES 6 A 233 LEU VAL SER GLN LYS SER ASP SER SER LYS ASP ILE ARG SEQRES 7 A 233 GLY ASP LYS ILE THR TRP ILE GLU GLY LYS GLU PRO GLY SEQRES 8 A 233 CYS GLU THR ILE GLY LEU LEU MET SER SER MET ASP ASP SEQRES 9 A 233 LEU ILE ARG HIS CYS ASN GLY LYS LEU GLY SER TYR LYS SEQRES 10 A 233 ILE ASN GLY ARG THR LYS ALA MET VAL ALA CYS TYR PRO SEQRES 11 A 233 GLY ASN GLY THR GLY TYR VAL ARG HIS VAL ASP ASN PRO SEQRES 12 A 233 ASN GLY ASP GLY ARG CYS VAL THR CYS ILE TYR TYR LEU SEQRES 13 A 233 ASN LYS ASP TRP ASP ALA LYS VAL SER GLY GLY ILE LEU SEQRES 14 A 233 ARG ILE PHE PRO GLU GLY LYS ALA GLN PHE ALA ASP ILE SEQRES 15 A 233 GLU PRO LYS PHE ASP ARG LEU LEU PHE PHE TRP SER ASP SEQRES 16 A 233 ARG ARG ASN PRO HIS GLU VAL GLN PRO ALA TYR ALA THR SEQRES 17 A 233 ARG TYR ALA ILE THR VAL TRP TYR PHE ASP ALA ASP GLU SEQRES 18 A 233 ARG ALA ARG ALA LYS VAL LYS TYR LEU THR GLY GLU SEQRES 1 B 14 48V DTY VAL TRP LEU THR ASP THR TRP VAL LEU SER ARG SEQRES 2 B 14 THR HET 48V B 0 19 HET DTY B 1 20 HET MN A 501 1 HET UN9 A 502 27 HETNAM 48V {[(2R)-2,3-DIAMINO-3-OXOPROPYL]SULFANYL}ACETIC ACID HETNAM DTY D-TYROSINE HETNAM MN MANGANESE (II) ION HETNAM UN9 N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE FORMUL 2 48V C5 H10 N2 O3 S FORMUL 2 DTY C9 H11 N O3 FORMUL 3 MN MN 2+ FORMUL 4 UN9 C12 H9 CL N2 O4 FORMUL 5 HOH *98(H2 O) HELIX 1 AA1 PRO A 189 TYR A 197 1 9 HELIX 2 AA2 TYR A 197 GLY A 206 1 10 HELIX 3 AA3 GLY A 215 THR A 232 1 18 HELIX 4 AA4 CYS A 266 CYS A 283 1 18 HELIX 5 AA5 ASP A 335 GLY A 340 1 6 HELIX 6 AA6 ALA A 393 ARG A 398 1 6 SHEET 1 AA1 5 THR A 236 ASP A 237 0 SHEET 2 AA1 5 LYS A 255 ILE A 259 -1 O ILE A 256 N THR A 236 SHEET 3 AA1 5 ALA A 298 PRO A 304 -1 O VAL A 300 N THR A 257 SHEET 4 AA1 5 THR A 382 ASP A 392 -1 O THR A 387 N MET A 299 SHEET 5 AA1 5 ILE A 292 ARG A 295 -1 N GLY A 294 O PHE A 391 SHEET 1 AA2 8 THR A 236 ASP A 237 0 SHEET 2 AA2 8 LYS A 255 ILE A 259 -1 O ILE A 256 N THR A 236 SHEET 3 AA2 8 ALA A 298 PRO A 304 -1 O VAL A 300 N THR A 257 SHEET 4 AA2 8 THR A 382 ASP A 392 -1 O THR A 387 N MET A 299 SHEET 5 AA2 8 ARG A 322 TYR A 329 -1 N CYS A 326 O VAL A 388 SHEET 6 AA2 8 ARG A 362 TRP A 367 -1 O PHE A 366 N THR A 325 SHEET 7 AA2 8 ILE A 207 ASP A 211 -1 N VAL A 210 O LEU A 363 SHEET 8 AA2 8 VAL B 9 SER B 11 1 O LEU B 10 N ASP A 211 SHEET 1 AA3 4 THR A 308 HIS A 313 0 SHEET 2 AA3 4 HIS A 374 ALA A 379 -1 O HIS A 374 N HIS A 313 SHEET 3 AA3 4 LEU A 343 ILE A 345 -1 N ARG A 344 O GLU A 375 SHEET 4 AA3 4 ALA A 354 ILE A 356 -1 O ILE A 356 N LEU A 343 LINK C09 48V B 0 N DTY B 1 1555 1555 1.43 LINK N01 48V B 0 C THR B 13 1555 1555 1.33 LINK C DTY B 1 N VAL B 2 1555 1555 1.33 LINK NE2 HIS A 313 MN MN A 501 1555 1555 2.20 LINK OD1 ASP A 315 MN MN A 501 1555 1555 2.20 LINK NE2 HIS A 374 MN MN A 501 1555 1555 2.01 LINK MN MN A 501 N8 UN9 A 502 1555 1555 2.28 LINK MN MN A 501 O13 UN9 A 502 1555 1555 2.03 LINK MN MN A 501 O HOH A 604 1555 1555 2.15 SITE 1 AC1 5 HIS A 313 ASP A 315 HIS A 374 UN9 A 502 SITE 2 AC1 5 HOH A 604 SITE 1 AC2 16 ASP A 254 MET A 299 TYR A 303 TYR A 310 SITE 2 AC2 16 HIS A 313 ASP A 315 TYR A 329 LEU A 343 SITE 3 AC2 16 HIS A 374 VAL A 376 ARG A 383 MN A 501 SITE 4 AC2 16 HOH A 604 HOH A 625 HOH A 657 HOH A 675 CRYST1 46.181 46.181 202.262 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021654 0.012502 0.000000 0.00000 SCALE2 0.000000 0.025004 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004944 0.00000