HEADER RNA BINDING PROTEIN 29-APR-20 6YWN TITLE CUTA IN COMPLEX WITH CMPCPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CUTA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTHIELAVIOIDES TERRESTRIS NRRL 8126; SOURCE 3 ORGANISM_TAXID: 578455; SOURCE 4 GENE: THITE_2112714; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACTERIAL; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28SUMO KEYWDS TERMINAL NUCLEOTIDE TRANSFERASE, POLYMERASE, RNA-BINDING PROTEIN, RNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.MALIK,K.KOBYLECKI,P.KRAWCZYK,J.POZNANSKI,A.JAKIELASZEK, AUTHOR 2 A.NAPIORKOWSKA,A.DZIEMBOWSKI,R.TOMECKI,M.NOWOTNY REVDAT 3 30-SEP-20 6YWN 1 JRNL REVDAT 2 16-SEP-20 6YWN 1 JRNL REVDAT 1 05-AUG-20 6YWN 0 JRNL AUTH D.MALIK,K.KOBYLECKI,P.KRAWCZYK,J.POZNANSKI,A.JAKIELASZEK, JRNL AUTH 2 A.NAPIORKOWSKA,A.DZIEMBOWSKI,R.TOMECKI,M.NOWOTNY JRNL TITL STRUCTURE AND MECHANISM OF CUTA, RNA NUCLEOTIDYL TRANSFERASE JRNL TITL 2 WITH AN UNUSUAL PREFERENCE FOR CYTOSINE. JRNL REF NUCLEIC ACIDS RES. V. 48 9387 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32785623 JRNL DOI 10.1093/NAR/GKAA647 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18_3861 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 63467 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.0800 - 4.1200 1.00 2787 146 0.1744 0.2151 REMARK 3 2 4.1200 - 3.2700 1.00 2685 142 0.1407 0.1416 REMARK 3 3 3.2700 - 2.8600 1.00 2674 140 0.1503 0.1601 REMARK 3 4 2.8600 - 2.6000 0.99 2626 139 0.1475 0.1768 REMARK 3 5 2.6000 - 2.4100 1.00 2654 139 0.1399 0.1446 REMARK 3 6 2.4100 - 2.2700 1.00 2638 139 0.1342 0.1694 REMARK 3 7 2.2700 - 2.1600 1.00 2620 138 0.1360 0.1650 REMARK 3 8 2.1600 - 2.0600 1.00 2620 138 0.1354 0.1825 REMARK 3 9 2.0600 - 1.9800 1.00 2649 139 0.1383 0.1733 REMARK 3 10 1.9800 - 1.9100 1.00 2618 138 0.1456 0.1796 REMARK 3 11 1.9100 - 1.8500 1.00 2595 137 0.1478 0.1853 REMARK 3 12 1.8500 - 1.8000 1.00 2600 136 0.1507 0.1691 REMARK 3 13 1.8000 - 1.7500 1.00 2638 139 0.1571 0.1917 REMARK 3 14 1.7500 - 1.7100 1.00 2602 137 0.1628 0.2034 REMARK 3 15 1.7100 - 1.6700 1.00 2608 138 0.1682 0.2151 REMARK 3 16 1.6700 - 1.6400 1.00 2582 136 0.1735 0.2132 REMARK 3 17 1.6400 - 1.6000 1.00 2625 138 0.1814 0.1976 REMARK 3 18 1.6000 - 1.5700 1.00 2601 137 0.1911 0.2329 REMARK 3 19 1.5700 - 1.5500 1.00 2604 137 0.2069 0.2248 REMARK 3 20 1.5500 - 1.5200 1.00 2599 136 0.2143 0.2719 REMARK 3 21 1.5200 - 1.4900 0.99 2578 136 0.2443 0.2868 REMARK 3 22 1.4900 - 1.4700 1.00 2615 138 0.2457 0.2868 REMARK 3 23 1.4700 - 1.4500 0.95 2477 129 0.2668 0.2786 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.128 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.729 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2986 REMARK 3 ANGLE : 1.206 4072 REMARK 3 CHIRALITY : 0.087 459 REMARK 3 PLANARITY : 0.008 521 REMARK 3 DIHEDRAL : 25.444 419 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 273 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5665 -0.2786 -29.5793 REMARK 3 T TENSOR REMARK 3 T11: 0.2823 T22: -0.0345 REMARK 3 T33: 0.2163 T12: -0.0168 REMARK 3 T13: -0.0185 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 9.0525 L22: 1.5051 REMARK 3 L33: 5.6481 L12: 0.0987 REMARK 3 L13: 1.5199 L23: -0.5646 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: 0.7396 S13: -0.0021 REMARK 3 S21: -0.1129 S22: 0.0746 S23: 0.1344 REMARK 3 S31: -0.1508 S32: -0.1538 S33: -0.0634 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 274 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3485 -4.5566 -7.4262 REMARK 3 T TENSOR REMARK 3 T11: 0.2104 T22: 0.2001 REMARK 3 T33: 0.1995 T12: 0.0042 REMARK 3 T13: -0.0251 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 8.5259 L22: 7.2408 REMARK 3 L33: 5.3257 L12: 7.4993 REMARK 3 L13: -6.6947 L23: -6.1158 REMARK 3 S TENSOR REMARK 3 S11: 0.1547 S12: -0.0786 S13: 0.1730 REMARK 3 S21: 0.1763 S22: -0.0699 S23: -0.1512 REMARK 3 S31: -0.1775 S32: 0.2589 S33: -0.0704 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 295 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.5141 -25.8507 -0.9275 REMARK 3 T TENSOR REMARK 3 T11: 0.1427 T22: 0.1462 REMARK 3 T33: 0.1334 T12: 0.0166 REMARK 3 T13: 0.0004 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 4.5485 L22: 2.9151 REMARK 3 L33: 1.0534 L12: 2.6683 REMARK 3 L13: -0.6096 L23: -0.1035 REMARK 3 S TENSOR REMARK 3 S11: 0.0039 S12: -0.1835 S13: -0.3522 REMARK 3 S21: 0.1319 S22: -0.1012 S23: -0.1423 REMARK 3 S31: 0.0884 S32: -0.0891 S33: 0.0851 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 354 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.7890 -21.7582 -4.0330 REMARK 3 T TENSOR REMARK 3 T11: 0.1510 T22: 0.2605 REMARK 3 T33: 0.2278 T12: 0.0559 REMARK 3 T13: 0.0104 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 4.9783 L22: 3.9850 REMARK 3 L33: 4.9858 L12: 1.1769 REMARK 3 L13: -1.2138 L23: 0.7040 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: 0.2258 S13: 0.0116 REMARK 3 S21: 0.1166 S22: -0.1321 S23: 0.0832 REMARK 3 S31: 0.0931 S32: -0.3024 S33: 0.1482 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 379 THROUGH 397 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.1736 -19.0750 -2.4434 REMARK 3 T TENSOR REMARK 3 T11: 0.1639 T22: 0.1933 REMARK 3 T33: 0.1656 T12: 0.0299 REMARK 3 T13: -0.0006 T23: 0.0287 REMARK 3 L TENSOR REMARK 3 L11: 5.1584 L22: 7.4968 REMARK 3 L33: 4.0749 L12: 1.7723 REMARK 3 L13: -0.0729 L23: 3.6924 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: -0.1330 S13: 0.1250 REMARK 3 S21: 0.0859 S22: -0.0816 S23: 0.0395 REMARK 3 S31: 0.1034 S32: -0.0718 S33: 0.1236 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 398 THROUGH 457 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.7724 -15.5015 -15.0914 REMARK 3 T TENSOR REMARK 3 T11: 0.1580 T22: 0.1653 REMARK 3 T33: 0.1498 T12: 0.0067 REMARK 3 T13: 0.0029 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.7865 L22: 2.4717 REMARK 3 L33: 0.8590 L12: 0.1847 REMARK 3 L13: -0.0166 L23: -0.1332 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: -0.0012 S13: 0.0178 REMARK 3 S21: 0.0599 S22: 0.0176 S23: 0.1245 REMARK 3 S31: -0.0195 S32: -0.0745 S33: 0.0186 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 458 THROUGH 487 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9782 -31.8730 -18.7709 REMARK 3 T TENSOR REMARK 3 T11: 0.1782 T22: 0.1611 REMARK 3 T33: 0.1769 T12: 0.0213 REMARK 3 T13: 0.0184 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 1.7258 L22: 4.1768 REMARK 3 L33: 0.9197 L12: 1.3475 REMARK 3 L13: -0.1352 L23: -0.6829 REMARK 3 S TENSOR REMARK 3 S11: -0.0996 S12: 0.0709 S13: -0.1370 REMARK 3 S21: -0.1446 S22: 0.0416 S23: -0.2374 REMARK 3 S31: 0.1271 S32: 0.0654 S33: 0.0609 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 488 THROUGH 534 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9974 -16.2499 -24.2993 REMARK 3 T TENSOR REMARK 3 T11: 0.1511 T22: 0.1844 REMARK 3 T33: 0.1715 T12: 0.0042 REMARK 3 T13: 0.0207 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.8215 L22: 1.7302 REMARK 3 L33: 0.8631 L12: 0.3703 REMARK 3 L13: 0.1622 L23: -0.3655 REMARK 3 S TENSOR REMARK 3 S11: -0.0384 S12: 0.1425 S13: -0.0276 REMARK 3 S21: -0.0606 S22: 0.0181 S23: -0.1474 REMARK 3 S31: 0.0678 S32: 0.0737 S33: 0.0282 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 535 THROUGH 564 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.5141 -18.9368 -29.7292 REMARK 3 T TENSOR REMARK 3 T11: 0.1694 T22: 0.2165 REMARK 3 T33: 0.2079 T12: -0.0206 REMARK 3 T13: -0.0167 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.0621 L22: 0.8625 REMARK 3 L33: 1.8244 L12: 0.1994 REMARK 3 L13: 0.6119 L23: -0.2198 REMARK 3 S TENSOR REMARK 3 S11: 0.0215 S12: 0.1053 S13: -0.0493 REMARK 3 S21: -0.0265 S22: -0.0443 S23: 0.1460 REMARK 3 S31: 0.1079 S32: -0.0758 S33: 0.0257 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 565 THROUGH 596 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1092 0.9636 -20.9616 REMARK 3 T TENSOR REMARK 3 T11: 0.2226 T22: 0.1317 REMARK 3 T33: 0.2259 T12: 0.0148 REMARK 3 T13: -0.0155 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 2.7491 L22: 1.8967 REMARK 3 L33: 2.2843 L12: 0.3240 REMARK 3 L13: 0.8339 L23: 0.0511 REMARK 3 S TENSOR REMARK 3 S11: -0.1628 S12: 0.0029 S13: 0.2153 REMARK 3 S21: -0.0132 S22: 0.0421 S23: 0.1338 REMARK 3 S31: -0.2734 S32: -0.0864 S33: 0.1121 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YWN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292108383. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 1.17.1_3660 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63468 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 32.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: XXXX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM FORMATE AND 20% REMARK 280 POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.41500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.41500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.11000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.73500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.11000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.73500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.41500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.11000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 46.73500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.41500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.11000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 46.73500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 241 REMARK 465 THR A 242 REMARK 465 ALA A 243 REMARK 465 ILE A 244 REMARK 465 PRO A 245 REMARK 465 PHE A 246 REMARK 465 SER A 247 REMARK 465 PRO A 597 REMARK 465 LYS A 598 REMARK 465 GLU A 599 REMARK 465 GLU A 600 REMARK 465 GLU A 601 REMARK 465 ARG A 602 REMARK 465 VAL A 603 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 248 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 271 CE NZ REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 ARG A 322 CZ NH1 NH2 REMARK 470 ARG A 349 CZ NH1 NH2 REMARK 470 GLU A 350 CG CD OE1 OE2 REMARK 470 LYS A 368 CE NZ REMARK 470 PHE A 438 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 477 CD OE1 NE2 REMARK 470 LYS A 497 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 976 O HOH A 1027 2.09 REMARK 500 NZ LYS A 259 OE1 GLU A 565 2.10 REMARK 500 O HOH A 879 O HOH A 1051 2.12 REMARK 500 O HOH A 831 O HOH A 923 2.15 REMARK 500 O HOH A 843 O HOH A 853 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 270 OE1 GLU A 274 3554 2.07 REMARK 500 O HOH A 886 O HOH A 1067 6444 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 371 CB CYS A 371 SG -0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 441 -139.69 -103.78 REMARK 500 ASP A 486 14.42 -147.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 339 OD2 REMARK 620 2 ASP A 341 OD2 98.6 REMARK 620 3 2TM A 702 O1G 82.0 164.1 REMARK 620 4 2TM A 702 O2A 134.7 105.8 84.2 REMARK 620 5 2TM A 702 O1B 142.6 88.2 82.1 76.6 REMARK 620 6 HOH A 825 O 72.7 78.3 116.6 75.6 144.3 REMARK 620 7 HOH A 888 O 68.4 78.2 87.4 153.4 77.3 130.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2TM A 702 DBREF 6YWN A 241 603 UNP G2R014 G2R014_THETT 241 603 SEQRES 1 A 363 GLU THR ALA ILE PRO PHE SER ARG ARG ARG MSE PRO TYR SEQRES 2 A 363 SER LEU GLY THR ASP LYS LEU GLU LYS VAL ASP PRO ASP SEQRES 3 A 363 LYS ILE LYS SER LYS LEU SER GLU ASP VAL GLU ARG LYS SEQRES 4 A 363 LEU GLU THR ASP MSE ARG GLU LEU TYR ASP ARG LEU LEU SEQRES 5 A 363 PRO THR GLU ALA ILE GLU VAL ASN ARG ARG GLU LEU VAL SEQRES 6 A 363 SER LYS LEU GLU ARG LEU PHE ASN THR GLU TRP PRO GLY SEQRES 7 A 363 HIS ASP ILE ARG VAL HIS LEU PHE GLY SER SER GLY ASN SEQRES 8 A 363 LEU LEU CYS SER ASP ASP SER ASP VAL ASP ILE CYS ILE SEQRES 9 A 363 THR THR PRO TRP ARG GLU LEU GLU SER VAL CYS MSE ILE SEQRES 10 A 363 ALA GLU LEU LEU ASP ARG HIS GLY MSE GLU LYS VAL VAL SEQRES 11 A 363 CYS VAL SER SER ALA LYS VAL PRO ILE VAL LYS ILE TRP SEQRES 12 A 363 ASP PRO GLU LEU LYS LEU ALA CYS ASP MSE ASN VAL ASN SEQRES 13 A 363 ASN THR LEU ALA LEU GLU ASN THR ARG MSE VAL ARG THR SEQRES 14 A 363 TYR VAL SER ILE ASP ASP ARG VAL ARG PRO LEU ALA MSE SEQRES 15 A 363 ILE ILE LYS TYR TRP THR ARG ARG ARG VAL VAL ASN ASP SEQRES 16 A 363 ALA ALA PHE GLY GLY THR LEU SER SER TYR THR TRP ILE SEQRES 17 A 363 CYS MSE ILE ILE ALA PHE LEU GLN LEU ARG ASP PRO PRO SEQRES 18 A 363 VAL LEU PRO ALA LEU HIS GLN GLN HIS ASP LEU LYS LEU SEQRES 19 A 363 VAL LYS GLN ASP GLY ALA LEU SER ASP PHE ALA ASP ASP SEQRES 20 A 363 ILE PRO LYS LEU ARG GLY PHE GLY ALA LYS ASN LYS ASP SEQRES 21 A 363 SER LEU ALA VAL LEU LEU PHE GLN PHE PHE ARG PHE TYR SEQRES 22 A 363 ALA HIS GLU PHE ASP TYR ASP LYS TYR THR LEU SER ILE SEQRES 23 A 363 ARG MSE GLY THR LEU LEU THR LYS ALA GLU LYS ASN TRP SEQRES 24 A 363 GLN TYR LEU VAL ASN ASN ALA LEU CYS VAL GLU GLU PRO SEQRES 25 A 363 PHE ASN ASP GLY ARG ASN LEU GLY ASN THR ALA ASP GLU SEQRES 26 A 363 THR SER PHE ARG GLY LEU HIS MSE GLU LEU ARG ARG ALA SEQRES 27 A 363 PHE ASP LEU ILE ALA GLU GLY LYS LEU GLU GLU CYS CYS SEQRES 28 A 363 GLU GLN TYR VAL PHE PRO LYS GLU GLU GLU ARG VAL MODRES 6YWN MSE A 251 MET MODIFIED RESIDUE MODRES 6YWN MSE A 284 MET MODIFIED RESIDUE MODRES 6YWN MSE A 356 MET MODIFIED RESIDUE MODRES 6YWN MSE A 366 MET MODIFIED RESIDUE MODRES 6YWN MSE A 393 MET MODIFIED RESIDUE MODRES 6YWN MSE A 406 MET MODIFIED RESIDUE MODRES 6YWN MSE A 422 MET MODIFIED RESIDUE MODRES 6YWN MSE A 450 MET MODIFIED RESIDUE MODRES 6YWN MSE A 528 MET MODIFIED RESIDUE MODRES 6YWN MSE A 573 MET MODIFIED RESIDUE HET MSE A 251 17 HET MSE A 284 17 HET MSE A 356 29 HET MSE A 366 17 HET MSE A 393 17 HET MSE A 406 17 HET MSE A 422 17 HET MSE A 450 17 HET MSE A 528 17 HET MSE A 573 17 HET CA A 701 1 HET 2TM A 702 43 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM 2TM 5'-O-[(S)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY) HETNAM 2 2TM PHOSPHORYL]METHYL}PHOSPHORYL]CYTIDINE HETSYN 2TM CMPCPP FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 CA CA 2+ FORMUL 3 2TM C10 H18 N3 O13 P3 FORMUL 4 HOH *375(H2 O) HELIX 1 AA1 PRO A 252 GLY A 256 5 5 HELIX 2 AA2 ASP A 264 ILE A 268 5 5 HELIX 3 AA3 SER A 273 LEU A 292 1 20 HELIX 4 AA4 THR A 294 TRP A 316 1 23 HELIX 5 AA5 GLY A 327 GLY A 330 5 4 HELIX 6 AA6 TRP A 348 SER A 353 5 6 HELIX 7 AA7 VAL A 354 HIS A 364 1 11 HELIX 8 AA8 ASN A 397 ASP A 414 1 18 HELIX 9 AA9 ARG A 416 ARG A 431 1 16 HELIX 10 AB1 SER A 443 LEU A 457 1 15 HELIX 11 AB2 ALA A 465 LYS A 473 5 9 HELIX 12 AB3 ASP A 487 ARG A 492 1 6 HELIX 13 AB4 SER A 501 HIS A 515 1 15 HELIX 14 AB5 ALA A 535 LEU A 542 5 8 HELIX 15 AB6 ASP A 564 ALA A 583 1 20 HELIX 16 AB7 LYS A 586 CYS A 591 1 6 SHEET 1 AA1 5 ARG A 322 PHE A 326 0 SHEET 2 AA1 5 VAL A 340 THR A 345 -1 O CYS A 343 N HIS A 324 SHEET 3 AA1 5 LEU A 389 VAL A 395 1 O ASN A 394 N ILE A 344 SHEET 4 AA1 5 ILE A 379 ASP A 384 -1 N VAL A 380 O MSE A 393 SHEET 5 AA1 5 GLU A 367 VAL A 372 -1 N VAL A 370 O LYS A 381 SHEET 1 AA2 4 LEU A 532 THR A 533 0 SHEET 2 AA2 4 TYR A 522 SER A 525 -1 N THR A 523 O LEU A 532 SHEET 3 AA2 4 VAL A 549 GLU A 551 1 O GLU A 550 N LEU A 524 SHEET 4 AA2 4 ASN A 554 ASN A 558 -1 O ARG A 557 N GLU A 551 LINK C ARG A 250 N MSE A 251 1555 1555 1.33 LINK C MSE A 251 N PRO A 252 1555 1555 1.33 LINK C ASP A 283 N MSE A 284 1555 1555 1.33 LINK C MSE A 284 N ARG A 285 1555 1555 1.33 LINK C CYS A 355 N MSE A 356 1555 1555 1.33 LINK C MSE A 356 N ILE A 357 1555 1555 1.34 LINK C GLY A 365 N MSE A 366 1555 1555 1.32 LINK C MSE A 366 N GLU A 367 1555 1555 1.34 LINK C ASP A 392 N MSE A 393 1555 1555 1.33 LINK C MSE A 393 N ASN A 394 1555 1555 1.33 LINK C ARG A 405 N MSE A 406 1555 1555 1.32 LINK C MSE A 406 N VAL A 407 1555 1555 1.33 LINK C ALA A 421 N MSE A 422 1555 1555 1.34 LINK C MSE A 422 N ILE A 423 1555 1555 1.34 LINK C CYS A 449 N MSE A 450 1555 1555 1.32 LINK C MSE A 450 N ILE A 451 1555 1555 1.33 LINK C ARG A 527 N MSE A 528 1555 1555 1.33 LINK C MSE A 528 N GLY A 529 1555 1555 1.33 LINK C HIS A 572 N MSE A 573 1555 1555 1.33 LINK C MSE A 573 N GLU A 574 1555 1555 1.34 LINK OD2 ASP A 339 CA CA A 701 1555 1555 2.47 LINK OD2 ASP A 341 CA CA A 701 1555 1555 2.47 LINK CA CA A 701 O1G 2TM A 702 1555 1555 2.33 LINK CA CA A 701 O2A 2TM A 702 1555 1555 2.40 LINK CA CA A 701 O1B 2TM A 702 1555 1555 2.40 LINK CA CA A 701 O HOH A 825 1555 1555 2.47 LINK CA CA A 701 O HOH A 888 1555 1555 2.46 CISPEP 1 ASP A 459 PRO A 460 0 -1.30 SITE 1 AC1 5 ASP A 339 ASP A 341 2TM A 702 HOH A 825 SITE 2 AC1 5 HOH A 888 SITE 1 AC2 29 PHE A 326 GLY A 327 SER A 328 ASN A 331 SITE 2 AC2 29 SER A 338 ASP A 339 ASP A 341 ALA A 400 SITE 3 AC2 29 ASN A 403 THR A 404 LYS A 425 SER A 444 SITE 4 AC2 29 TYR A 445 ILE A 448 ARG A 557 LEU A 559 SITE 5 AC2 29 CA A 701 HOH A 821 HOH A 825 HOH A 833 SITE 6 AC2 29 HOH A 866 HOH A 888 HOH A 908 HOH A 920 SITE 7 AC2 29 HOH A 927 HOH A 970 HOH A 975 HOH A1004 SITE 8 AC2 29 HOH A1046 CRYST1 88.220 93.470 86.830 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011335 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010699 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011517 0.00000