HEADER RNA BINDING PROTEIN 29-APR-20 6YWP TITLE STRUCTURE OF APO-CUTA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CUTA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CUTA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTHIELAVIOIDES TERRESTRIS (STRAIN ATCC SOURCE 3 38088 / NRRL 8126); SOURCE 4 ORGANISM_TAXID: 578455; SOURCE 5 GENE: THITE_2112714; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACTERIAL; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28SUMO KEYWDS TERMINAL NUCLEOTIDE TRANSFERASE, POLYMERASE, RNA-BINDING PROTEIN, RNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.MALIK,K.KOBYLECKI,P.KRAWCZYK,J.POZNANSKI,A.JAKIELASZEK, AUTHOR 2 A.NAPIORKOWSKA,A.DZIEMBOWSKI,R.TOMECKI,M.NOWOTNY REVDAT 3 30-SEP-20 6YWP 1 JRNL REVDAT 2 16-SEP-20 6YWP 1 JRNL REVDAT 1 05-AUG-20 6YWP 0 JRNL AUTH D.MALIK,K.KOBYLECKI,P.KRAWCZYK,J.POZNANSKI,A.JAKIELASZEK, JRNL AUTH 2 A.NAPIORKOWSKA,A.DZIEMBOWSKI,R.TOMECKI,M.NOWOTNY JRNL TITL STRUCTURE AND MECHANISM OF CUTA, RNA NUCLEOTIDYL TRANSFERASE JRNL TITL 2 WITH AN UNUSUAL PREFERENCE FOR CYTOSINE. JRNL REF NUCLEIC ACIDS RES. V. 48 9387 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32785623 JRNL DOI 10.1093/NAR/GKAA647 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 41363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6600 - 5.1500 0.97 3386 139 0.1988 0.2486 REMARK 3 2 5.1500 - 4.0900 0.99 3338 138 0.1595 0.1815 REMARK 3 3 4.0900 - 3.5700 0.99 3323 138 0.1644 0.2231 REMARK 3 4 3.5700 - 3.2400 0.98 3345 138 0.1797 0.2346 REMARK 3 5 3.2400 - 3.0100 0.99 3302 136 0.1958 0.2436 REMARK 3 6 3.0100 - 2.8300 0.99 3323 137 0.2145 0.2606 REMARK 3 7 2.8300 - 2.6900 0.97 3265 134 0.2162 0.2540 REMARK 3 8 2.6900 - 2.5800 0.98 3289 136 0.2309 0.2895 REMARK 3 9 2.5800 - 2.4800 0.99 3290 137 0.2426 0.2818 REMARK 3 10 2.4800 - 2.3900 0.99 3323 137 0.2610 0.3148 REMARK 3 11 2.3900 - 2.3200 0.99 3319 137 0.2787 0.3208 REMARK 3 12 2.3200 - 2.2500 0.97 3219 134 0.3159 0.3344 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.303 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.807 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 5643 REMARK 3 ANGLE : 0.480 7654 REMARK 3 CHIRALITY : 0.040 867 REMARK 3 PLANARITY : 0.003 988 REMARK 3 DIHEDRAL : 24.227 2092 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3077 -29.2910 49.9371 REMARK 3 T TENSOR REMARK 3 T11: 0.3118 T22: 0.2647 REMARK 3 T33: 0.4534 T12: 0.0831 REMARK 3 T13: 0.0616 T23: -0.0488 REMARK 3 L TENSOR REMARK 3 L11: 2.9036 L22: 3.8066 REMARK 3 L33: 3.1667 L12: 1.1497 REMARK 3 L13: 0.6650 L23: 0.2206 REMARK 3 S TENSOR REMARK 3 S11: 0.1102 S12: 0.0640 S13: -0.4391 REMARK 3 S21: -0.1094 S22: -0.0178 S23: -0.4107 REMARK 3 S31: 0.5128 S32: 0.0225 S33: -0.1290 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 295 THROUGH 397 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1089 4.6335 50.2772 REMARK 3 T TENSOR REMARK 3 T11: 0.3717 T22: 0.2804 REMARK 3 T33: 0.3300 T12: -0.0809 REMARK 3 T13: -0.0136 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 3.6557 L22: 7.2381 REMARK 3 L33: 2.2989 L12: 0.5451 REMARK 3 L13: -0.3171 L23: -2.1378 REMARK 3 S TENSOR REMARK 3 S11: -0.0332 S12: 0.0706 S13: 0.2053 REMARK 3 S21: 0.2179 S22: 0.1138 S23: 0.2271 REMARK 3 S31: -0.0957 S32: -0.0779 S33: -0.1001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 398 THROUGH 598 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0479 -18.8394 51.4965 REMARK 3 T TENSOR REMARK 3 T11: 0.2956 T22: 0.2122 REMARK 3 T33: 0.3274 T12: -0.0499 REMARK 3 T13: 0.0070 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.4852 L22: 1.9015 REMARK 3 L33: 1.9400 L12: 0.0354 REMARK 3 L13: 0.3292 L23: -0.4026 REMARK 3 S TENSOR REMARK 3 S11: -0.0665 S12: 0.0435 S13: 0.0220 REMARK 3 S21: 0.0447 S22: 0.0551 S23: 0.0307 REMARK 3 S31: -0.0077 S32: -0.0761 S33: -0.0067 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 248 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7608 4.5538 6.0308 REMARK 3 T TENSOR REMARK 3 T11: 0.6753 T22: 0.8358 REMARK 3 T33: 0.5314 T12: -0.1149 REMARK 3 T13: -0.0115 T23: -0.1478 REMARK 3 L TENSOR REMARK 3 L11: 5.4931 L22: 0.5569 REMARK 3 L33: 2.9351 L12: 0.8579 REMARK 3 L13: -0.4162 L23: 0.3744 REMARK 3 S TENSOR REMARK 3 S11: -0.2146 S12: 1.7787 S13: -0.2634 REMARK 3 S21: -0.3640 S22: 0.3540 S23: -0.0924 REMARK 3 S31: 0.1405 S32: 0.4153 S33: -0.1257 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 295 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.5648 0.1911 24.1762 REMARK 3 T TENSOR REMARK 3 T11: 0.2923 T22: 0.3516 REMARK 3 T33: 0.3327 T12: -0.0264 REMARK 3 T13: -0.0146 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 4.7561 L22: 2.4060 REMARK 3 L33: 2.0577 L12: 3.0106 REMARK 3 L13: -1.8275 L23: -1.3170 REMARK 3 S TENSOR REMARK 3 S11: -0.0706 S12: 0.4058 S13: 0.2645 REMARK 3 S21: -0.0226 S22: 0.1850 S23: 0.1369 REMARK 3 S31: -0.0559 S32: -0.0749 S33: -0.1098 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 431 THROUGH 596 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1159 11.0833 18.2966 REMARK 3 T TENSOR REMARK 3 T11: 0.3309 T22: 0.3810 REMARK 3 T33: 0.3114 T12: -0.0978 REMARK 3 T13: 0.0189 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 5.5942 L22: 2.8505 REMARK 3 L33: 3.5426 L12: 1.1879 REMARK 3 L13: 0.9871 L23: 0.3242 REMARK 3 S TENSOR REMARK 3 S11: -0.1443 S12: 0.6848 S13: 0.2009 REMARK 3 S21: -0.2328 S22: 0.1142 S23: 0.1414 REMARK 3 S31: -0.0888 S32: 0.1100 S33: 0.0436 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YWP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292108427. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97600 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41372 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.460 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES-KOH PH 7.5, 0.2 M LITHIUM REMARK 280 SULFATE MONOHYDRATE AND 25% POLYETHYLENE GLYCOL 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.98000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.11650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.98000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.11650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 241 REMARK 465 THR A 242 REMARK 465 ALA A 243 REMARK 465 ILE A 244 REMARK 465 PRO A 245 REMARK 465 PHE A 246 REMARK 465 SER A 247 REMARK 465 SER A 374 REMARK 465 GLU A 599 REMARK 465 GLU A 600 REMARK 465 GLU A 601 REMARK 465 ARG A 602 REMARK 465 VAL A 603 REMARK 465 GLU B 241 REMARK 465 THR B 242 REMARK 465 ALA B 243 REMARK 465 ILE B 244 REMARK 465 PRO B 245 REMARK 465 PHE B 246 REMARK 465 SER B 247 REMARK 465 SER B 373 REMARK 465 SER B 374 REMARK 465 PHE B 596 REMARK 465 PRO B 597 REMARK 465 LYS B 598 REMARK 465 GLU B 599 REMARK 465 GLU B 600 REMARK 465 GLU B 601 REMARK 465 ARG B 602 REMARK 465 VAL B 603 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 259 CG CD CE NZ REMARK 470 LYS A 262 CG CD CE NZ REMARK 470 ASP A 264 CG OD1 OD2 REMARK 470 ASP A 266 CG OD1 OD2 REMARK 470 LYS A 267 CG CD CE NZ REMARK 470 SER A 270 OG REMARK 470 LYS A 271 NZ REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 470 GLU A 350 CG CD OE1 OE2 REMARK 470 LYS A 368 CE NZ REMARK 470 LYS A 376 CG CD CE NZ REMARK 470 GLU A 386 CG CD OE1 OE2 REMARK 470 LYS A 388 CD CE NZ REMARK 470 LYS A 490 CE NZ REMARK 470 ARG A 492 NE CZ NH1 NH2 REMARK 470 ARG A 557 CD NE CZ NH1 NH2 REMARK 470 LYS A 598 CG CD CE NZ REMARK 470 ARG B 248 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 259 CG CD CE NZ REMARK 470 GLU B 261 CG CD OE1 OE2 REMARK 470 LYS B 262 CG CD CE NZ REMARK 470 SER B 270 OG REMARK 470 LYS B 271 NZ REMARK 470 SER B 273 OG REMARK 470 GLU B 274 CG CD OE1 OE2 REMARK 470 ASP B 275 CG OD1 OD2 REMARK 470 VAL B 276 CG1 CG2 REMARK 470 ARG B 278 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 279 CE NZ REMARK 470 GLU B 286 CG CD OE1 OE2 REMARK 470 GLU B 303 CG CD OE1 OE2 REMARK 470 GLU B 386 CD OE1 OE2 REMARK 470 LYS B 388 CE NZ REMARK 470 ARG B 430 CZ NH1 NH2 REMARK 470 PHE B 438 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 474 CG CD1 CD2 REMARK 470 VAL B 475 CG1 CG2 REMARK 470 GLN B 477 CG CD OE1 NE2 REMARK 470 LYS B 490 CG CD CE NZ REMARK 470 LYS B 497 CG CD CE NZ REMARK 470 LEU B 502 CG CD1 CD2 REMARK 470 ARG B 557 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 346 147.93 -171.60 REMARK 500 LYS A 376 -72.54 -41.74 REMARK 500 THR A 441 -147.51 -102.02 REMARK 500 HIS A 515 -33.87 -135.00 REMARK 500 ASN A 544 60.19 60.30 REMARK 500 THR B 441 -141.31 -105.56 REMARK 500 HIS B 515 -33.95 -133.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1021 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A1022 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH A1023 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH A1024 DISTANCE = 7.12 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 492 O REMARK 620 2 HOH A 885 O 69.9 REMARK 620 3 HOH A 980 O 108.6 178.3 REMARK 620 4 HOH A1013 O 160.4 93.9 87.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 701 DBREF 6YWP A 241 603 UNP G2R014 G2R014_THETT 241 603 DBREF 6YWP B 241 603 UNP G2R014 G2R014_THETT 241 603 SEQRES 1 A 363 GLU THR ALA ILE PRO PHE SER ARG ARG ARG MET PRO TYR SEQRES 2 A 363 SER LEU GLY THR ASP LYS LEU GLU LYS VAL ASP PRO ASP SEQRES 3 A 363 LYS ILE LYS SER LYS LEU SER GLU ASP VAL GLU ARG LYS SEQRES 4 A 363 LEU GLU THR ASP MET ARG GLU LEU TYR ASP ARG LEU LEU SEQRES 5 A 363 PRO THR GLU ALA ILE GLU VAL ASN ARG ARG GLU LEU VAL SEQRES 6 A 363 SER LYS LEU GLU ARG LEU PHE ASN THR GLU TRP PRO GLY SEQRES 7 A 363 HIS ASP ILE ARG VAL HIS LEU PHE GLY SER SER GLY ASN SEQRES 8 A 363 LEU LEU CYS SER ASP ASP SER ASP VAL ASP ILE CYS ILE SEQRES 9 A 363 THR THR PRO TRP ARG GLU LEU GLU SER VAL CYS MET ILE SEQRES 10 A 363 ALA GLU LEU LEU ASP ARG HIS GLY MET GLU LYS VAL VAL SEQRES 11 A 363 CYS VAL SER SER ALA LYS VAL PRO ILE VAL LYS ILE TRP SEQRES 12 A 363 ASP PRO GLU LEU LYS LEU ALA CYS ASP MET ASN VAL ASN SEQRES 13 A 363 ASN THR LEU ALA LEU GLU ASN THR ARG MET VAL ARG THR SEQRES 14 A 363 TYR VAL SER ILE ASP ASP ARG VAL ARG PRO LEU ALA MET SEQRES 15 A 363 ILE ILE LYS TYR TRP THR ARG ARG ARG VAL VAL ASN ASP SEQRES 16 A 363 ALA ALA PHE GLY GLY THR LEU SER SER TYR THR TRP ILE SEQRES 17 A 363 CYS MET ILE ILE ALA PHE LEU GLN LEU ARG ASP PRO PRO SEQRES 18 A 363 VAL LEU PRO ALA LEU HIS GLN GLN HIS ASP LEU LYS LEU SEQRES 19 A 363 VAL LYS GLN ASP GLY ALA LEU SER ASP PHE ALA ASP ASP SEQRES 20 A 363 ILE PRO LYS LEU ARG GLY PHE GLY ALA LYS ASN LYS ASP SEQRES 21 A 363 SER LEU ALA VAL LEU LEU PHE GLN PHE PHE ARG PHE TYR SEQRES 22 A 363 ALA HIS GLU PHE ASP TYR ASP LYS TYR THR LEU SER ILE SEQRES 23 A 363 ARG MET GLY THR LEU LEU THR LYS ALA GLU LYS ASN TRP SEQRES 24 A 363 GLN TYR LEU VAL ASN ASN ALA LEU CYS VAL GLU GLU PRO SEQRES 25 A 363 PHE ASN ASP GLY ARG ASN LEU GLY ASN THR ALA ASP GLU SEQRES 26 A 363 THR SER PHE ARG GLY LEU HIS MET GLU LEU ARG ARG ALA SEQRES 27 A 363 PHE ASP LEU ILE ALA GLU GLY LYS LEU GLU GLU CYS CYS SEQRES 28 A 363 GLU GLN TYR VAL PHE PRO LYS GLU GLU GLU ARG VAL SEQRES 1 B 363 GLU THR ALA ILE PRO PHE SER ARG ARG ARG MET PRO TYR SEQRES 2 B 363 SER LEU GLY THR ASP LYS LEU GLU LYS VAL ASP PRO ASP SEQRES 3 B 363 LYS ILE LYS SER LYS LEU SER GLU ASP VAL GLU ARG LYS SEQRES 4 B 363 LEU GLU THR ASP MET ARG GLU LEU TYR ASP ARG LEU LEU SEQRES 5 B 363 PRO THR GLU ALA ILE GLU VAL ASN ARG ARG GLU LEU VAL SEQRES 6 B 363 SER LYS LEU GLU ARG LEU PHE ASN THR GLU TRP PRO GLY SEQRES 7 B 363 HIS ASP ILE ARG VAL HIS LEU PHE GLY SER SER GLY ASN SEQRES 8 B 363 LEU LEU CYS SER ASP ASP SER ASP VAL ASP ILE CYS ILE SEQRES 9 B 363 THR THR PRO TRP ARG GLU LEU GLU SER VAL CYS MET ILE SEQRES 10 B 363 ALA GLU LEU LEU ASP ARG HIS GLY MET GLU LYS VAL VAL SEQRES 11 B 363 CYS VAL SER SER ALA LYS VAL PRO ILE VAL LYS ILE TRP SEQRES 12 B 363 ASP PRO GLU LEU LYS LEU ALA CYS ASP MET ASN VAL ASN SEQRES 13 B 363 ASN THR LEU ALA LEU GLU ASN THR ARG MET VAL ARG THR SEQRES 14 B 363 TYR VAL SER ILE ASP ASP ARG VAL ARG PRO LEU ALA MET SEQRES 15 B 363 ILE ILE LYS TYR TRP THR ARG ARG ARG VAL VAL ASN ASP SEQRES 16 B 363 ALA ALA PHE GLY GLY THR LEU SER SER TYR THR TRP ILE SEQRES 17 B 363 CYS MET ILE ILE ALA PHE LEU GLN LEU ARG ASP PRO PRO SEQRES 18 B 363 VAL LEU PRO ALA LEU HIS GLN GLN HIS ASP LEU LYS LEU SEQRES 19 B 363 VAL LYS GLN ASP GLY ALA LEU SER ASP PHE ALA ASP ASP SEQRES 20 B 363 ILE PRO LYS LEU ARG GLY PHE GLY ALA LYS ASN LYS ASP SEQRES 21 B 363 SER LEU ALA VAL LEU LEU PHE GLN PHE PHE ARG PHE TYR SEQRES 22 B 363 ALA HIS GLU PHE ASP TYR ASP LYS TYR THR LEU SER ILE SEQRES 23 B 363 ARG MET GLY THR LEU LEU THR LYS ALA GLU LYS ASN TRP SEQRES 24 B 363 GLN TYR LEU VAL ASN ASN ALA LEU CYS VAL GLU GLU PRO SEQRES 25 B 363 PHE ASN ASP GLY ARG ASN LEU GLY ASN THR ALA ASP GLU SEQRES 26 B 363 THR SER PHE ARG GLY LEU HIS MET GLU LEU ARG ARG ALA SEQRES 27 B 363 PHE ASP LEU ILE ALA GLU GLY LYS LEU GLU GLU CYS CYS SEQRES 28 B 363 GLU GLN TYR VAL PHE PRO LYS GLU GLU GLU ARG VAL HET MG A 701 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG MG 2+ FORMUL 4 HOH *348(H2 O) HELIX 1 AA1 PRO A 252 GLY A 256 5 5 HELIX 2 AA2 ASP A 264 ILE A 268 5 5 HELIX 3 AA3 SER A 273 LEU A 292 1 20 HELIX 4 AA4 THR A 294 TRP A 316 1 23 HELIX 5 AA5 GLY A 327 GLY A 330 5 4 HELIX 6 AA6 TRP A 348 GLU A 352 5 5 HELIX 7 AA7 SER A 353 HIS A 364 1 12 HELIX 8 AA8 ASN A 397 ASP A 414 1 18 HELIX 9 AA9 ARG A 416 ARG A 431 1 16 HELIX 10 AB1 SER A 443 LEU A 457 1 15 HELIX 11 AB2 GLN A 469 LYS A 473 5 5 HELIX 12 AB3 ASP A 487 ARG A 492 1 6 HELIX 13 AB4 GLY A 493 ASN A 498 5 6 HELIX 14 AB5 SER A 501 HIS A 515 1 15 HELIX 15 AB6 ALA A 535 LEU A 542 5 8 HELIX 16 AB7 GLY A 560 ALA A 563 5 4 HELIX 17 AB8 ASP A 564 ALA A 583 1 20 HELIX 18 AB9 LYS A 586 CYS A 591 1 6 HELIX 19 AC1 PRO B 252 GLY B 256 5 5 HELIX 20 AC2 ASP B 264 ILE B 268 5 5 HELIX 21 AC3 SER B 273 LEU B 292 1 20 HELIX 22 AC4 THR B 294 TRP B 316 1 23 HELIX 23 AC5 GLY B 327 GLY B 330 5 4 HELIX 24 AC6 TRP B 348 SER B 353 5 6 HELIX 25 AC7 VAL B 354 HIS B 364 1 11 HELIX 26 AC8 ASN B 397 ASP B 414 1 18 HELIX 27 AC9 ARG B 416 ARG B 431 1 16 HELIX 28 AD1 SER B 443 LEU B 457 1 15 HELIX 29 AD2 ALA B 465 LYS B 473 5 9 HELIX 30 AD3 ASP B 487 ARG B 492 1 6 HELIX 31 AD4 GLY B 493 ASN B 498 5 6 HELIX 32 AD5 SER B 501 HIS B 515 1 15 HELIX 33 AD6 ALA B 535 LEU B 542 5 8 HELIX 34 AD7 ASN B 558 ALA B 563 5 6 HELIX 35 AD8 ASP B 564 ALA B 583 1 20 HELIX 36 AD9 LYS B 586 CYS B 591 1 6 SHEET 1 AA1 5 ARG A 322 PHE A 326 0 SHEET 2 AA1 5 VAL A 340 THR A 345 -1 O CYS A 343 N HIS A 324 SHEET 3 AA1 5 LEU A 389 VAL A 395 1 O ASN A 394 N ILE A 344 SHEET 4 AA1 5 ILE A 379 ASP A 384 -1 N ASP A 384 O LEU A 389 SHEET 5 AA1 5 GLU A 367 VAL A 372 -1 N VAL A 370 O LYS A 381 SHEET 1 AA2 4 LEU A 531 THR A 533 0 SHEET 2 AA2 4 TYR A 522 SER A 525 -1 N THR A 523 O LEU A 532 SHEET 3 AA2 4 VAL A 549 GLU A 551 1 O GLU A 550 N LEU A 524 SHEET 4 AA2 4 ASN A 554 ASN A 558 -1 O ARG A 557 N GLU A 551 SHEET 1 AA3 5 ARG B 322 LEU B 325 0 SHEET 2 AA3 5 VAL B 340 THR B 345 -1 O CYS B 343 N HIS B 324 SHEET 3 AA3 5 LEU B 389 VAL B 395 1 O ASN B 394 N ILE B 344 SHEET 4 AA3 5 VAL B 380 ASP B 384 -1 N ASP B 384 O LEU B 389 SHEET 5 AA3 5 GLU B 367 CYS B 371 -1 N GLU B 367 O TRP B 383 SHEET 1 AA4 3 LEU B 532 THR B 533 0 SHEET 2 AA4 3 TYR B 522 SER B 525 -1 N THR B 523 O LEU B 532 SHEET 3 AA4 3 VAL B 549 GLU B 550 1 O GLU B 550 N LEU B 524 SSBOND 1 CYS A 355 CYS A 371 1555 1555 2.04 SSBOND 2 CYS B 355 CYS B 371 1555 1555 2.04 LINK O ARG A 492 MG MG A 701 1555 1555 2.96 LINK MG MG A 701 O HOH A 885 1555 2556 2.79 LINK MG MG A 701 O HOH A 980 1555 1555 2.09 LINK MG MG A 701 O HOH A1013 1555 2556 2.26 CISPEP 1 ASP A 459 PRO A 460 0 -0.97 CISPEP 2 ASP B 459 PRO B 460 0 -0.89 SITE 1 AC1 4 ARG A 492 HOH A 885 HOH A 980 HOH A1013 CRYST1 89.960 70.233 145.337 90.00 103.18 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011116 0.000000 0.002604 0.00000 SCALE2 0.000000 0.014238 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007067 0.00000