HEADER PEPTIDE BINDING PROTEIN 30-APR-20 6YWZ TITLE CRYSTAL STRUCTURE OF SHANK1 PDZ IN COMPLEX WITH A PEPTIDE-SMALL TITLE 2 MOLECULE HYBRID COMPND MOL_ID: 1; COMPND 2 MOLECULE: SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN 1; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: SHANK1,SOMATOSTATIN RECEPTOR-INTERACTING PROTEIN,SSTRIP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SHANK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-PROTEIN INTERACTIONS PDZ DOMAIN, HYBRID STRUCTURES, FRAGMENT- KEYWDS 2 BASED DRUG DISCOVERY, BETA-SHEETS, ACYLHYDRAZONE, PEPTIDE BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.HEGEDUS,F.HOBOR,D.K.SHOEMARK,S.CELIS,L.J.LIAN,C.H.TRINH, AUTHOR 2 R.B.SESSIONS,T.A.EDWARDS,A.J.WILSON REVDAT 3 24-JAN-24 6YWZ 1 REMARK REVDAT 2 07-JUL-21 6YWZ 1 JRNL REVDAT 1 20-JAN-21 6YWZ 0 JRNL AUTH Z.HEGEDUS,F.HOBOR,D.K.SHOEMARK,S.CELIS,L.Y.LIAN,C.H.TRINH, JRNL AUTH 2 R.B.SESSIONS,T.A.EDWARDS,A.J.WILSON JRNL TITL IDENTIFICATION OF BETA-STRAND MEDIATED PROTEIN-PROTEIN JRNL TITL 2 INTERACTION INHIBITORS USING LIGAND-DIRECTED FRAGMENT JRNL TITL 3 LIGATION. JRNL REF CHEM SCI V. 12 2286 2021 JRNL REFN ISSN 2041-6520 JRNL PMID 34163995 JRNL DOI 10.1039/D0SC05694D REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0026 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 15065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.710 REMARK 3 FREE R VALUE TEST SET COUNT : 709 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2800 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.3268 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.3629 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1610 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.235 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): 9.1130 6.2536 1.8009 REMARK 3 T TENSOR REMARK 3 T11: 0.4624 T22: 0.4281 REMARK 3 T33: 0.4250 T12: 0.0449 REMARK 3 T13: 0.0596 T23: 0.0826 REMARK 3 L TENSOR REMARK 3 L11: 1.1044 L22: 0.5733 REMARK 3 L33: 2.1417 L12: 0.1404 REMARK 3 L13: -0.9441 L23: 0.8108 REMARK 3 S TENSOR REMARK 3 S11: 0.2800 S12: 0.1101 S13: 0.4573 REMARK 3 S21: -0.0058 S22: -0.0455 S23: -0.0972 REMARK 3 S31: -0.5961 S32: 0.1270 S33: -0.2231 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): 11.8666 -8.2409 11.4980 REMARK 3 T TENSOR REMARK 3 T11: 0.5185 T22: 0.4265 REMARK 3 T33: 0.5740 T12: 0.0500 REMARK 3 T13: -0.0042 T23: 0.0458 REMARK 3 L TENSOR REMARK 3 L11: 0.1337 L22: 3.2053 REMARK 3 L33: 5.5772 L12: 0.2305 REMARK 3 L13: -0.4433 L23: -2.3088 REMARK 3 S TENSOR REMARK 3 S11: -0.1177 S12: -0.2824 S13: 0.1042 REMARK 3 S21: 0.1092 S22: -0.2251 S23: 0.1972 REMARK 3 S31: 0.6071 S32: 0.8073 S33: 0.3234 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): 11.0855 0.3198 3.0825 REMARK 3 T TENSOR REMARK 3 T11: 0.3299 T22: 0.3468 REMARK 3 T33: 0.3714 T12: -0.0023 REMARK 3 T13: -0.0215 T23: 0.0822 REMARK 3 L TENSOR REMARK 3 L11: 5.3998 L22: 3.8526 REMARK 3 L33: 6.1495 L12: 0.7881 REMARK 3 L13: -3.1311 L23: 0.9841 REMARK 3 S TENSOR REMARK 3 S11: -0.0137 S12: 0.0046 S13: 0.0072 REMARK 3 S21: 0.2707 S22: -0.0064 S23: 0.0808 REMARK 3 S31: 0.0252 S32: 0.3108 S33: -0.0103 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): -0.0971 11.1728 2.5217 REMARK 3 T TENSOR REMARK 3 T11: 1.1685 T22: 0.7256 REMARK 3 T33: 0.6019 T12: 0.2861 REMARK 3 T13: 0.2732 T23: 0.1614 REMARK 3 L TENSOR REMARK 3 L11: 2.0112 L22: 1.3003 REMARK 3 L33: 6.5213 L12: 1.3534 REMARK 3 L13: 3.0042 L23: 2.9147 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: 1.1111 S13: 0.9436 REMARK 3 S21: -0.5109 S22: -0.3895 S23: -0.0165 REMARK 3 S31: -0.0520 S32: -1.9684 S33: 0.3976 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): -11.9781 4.7225 30.7007 REMARK 3 T TENSOR REMARK 3 T11: 0.3481 T22: 0.4770 REMARK 3 T33: 0.3505 T12: -0.0289 REMARK 3 T13: -0.0250 T23: -0.1002 REMARK 3 L TENSOR REMARK 3 L11: 2.5903 L22: 2.7477 REMARK 3 L33: 2.8954 L12: 0.3760 REMARK 3 L13: -0.8469 L23: -0.5020 REMARK 3 S TENSOR REMARK 3 S11: 0.1043 S12: -0.1884 S13: 0.0643 REMARK 3 S21: 0.0609 S22: 0.0238 S23: 0.0700 REMARK 3 S31: -0.2535 S32: -0.5241 S33: -0.1180 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): -10.1290 -2.2386 13.9145 REMARK 3 T TENSOR REMARK 3 T11: 0.6609 T22: 0.6356 REMARK 3 T33: 0.5525 T12: 0.0607 REMARK 3 T13: -0.0212 T23: -0.1796 REMARK 3 L TENSOR REMARK 3 L11: 2.5982 L22: 1.3951 REMARK 3 L33: 4.9631 L12: -0.3013 REMARK 3 L13: -2.0512 L23: 0.7491 REMARK 3 S TENSOR REMARK 3 S11: 0.4645 S12: 1.7022 S13: -0.7336 REMARK 3 S21: -1.1228 S22: -0.5856 S23: -0.1154 REMARK 3 S31: -0.7009 S32: -1.4983 S33: 0.0139 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): -14.4315 5.6345 23.7193 REMARK 3 T TENSOR REMARK 3 T11: 0.4354 T22: 0.4787 REMARK 3 T33: 0.4012 T12: 0.1168 REMARK 3 T13: -0.0600 T23: -0.0613 REMARK 3 L TENSOR REMARK 3 L11: 2.6440 L22: 3.3696 REMARK 3 L33: 3.9841 L12: 1.5285 REMARK 3 L13: -0.8020 L23: 0.6481 REMARK 3 S TENSOR REMARK 3 S11: 0.1039 S12: 0.2975 S13: 0.1012 REMARK 3 S21: -0.3375 S22: 0.0236 S23: 0.0307 REMARK 3 S31: -0.5100 S32: -0.5412 S33: -0.1376 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): -10.7524 -8.5483 24.9536 REMARK 3 T TENSOR REMARK 3 T11: 0.4744 T22: 0.4051 REMARK 3 T33: 0.6939 T12: -0.0685 REMARK 3 T13: -0.0587 T23: -0.1180 REMARK 3 L TENSOR REMARK 3 L11: 4.0742 L22: 2.2384 REMARK 3 L33: 4.2940 L12: 1.8062 REMARK 3 L13: -0.1015 L23: -0.2798 REMARK 3 S TENSOR REMARK 3 S11: -0.0471 S12: 0.2772 S13: -1.5079 REMARK 3 S21: 0.1367 S22: -0.0266 S23: 0.1000 REMARK 3 S31: 1.3188 S32: -0.1062 S33: -0.0250 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): -8.3427 3.6268 24.8715 REMARK 3 T TENSOR REMARK 3 T11: 0.4312 T22: 0.4966 REMARK 3 T33: 0.4564 T12: 0.0540 REMARK 3 T13: -0.0537 T23: -0.1121 REMARK 3 L TENSOR REMARK 3 L11: 3.0061 L22: 2.2331 REMARK 3 L33: 8.0803 L12: 0.7340 REMARK 3 L13: -2.9841 L23: -3.0303 REMARK 3 S TENSOR REMARK 3 S11: 0.2616 S12: -0.0212 S13: 0.1720 REMARK 3 S21: 0.1246 S22: 0.1481 S23: 0.1686 REMARK 3 S31: -0.4277 S32: 0.0947 S33: -0.4956 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): -20.5151 -4.0674 21.9436 REMARK 3 T TENSOR REMARK 3 T11: 0.5357 T22: 0.7405 REMARK 3 T33: 0.6427 T12: -0.0510 REMARK 3 T13: -0.0548 T23: -0.2692 REMARK 3 L TENSOR REMARK 3 L11: 3.2290 L22: 2.4067 REMARK 3 L33: 1.9068 L12: 0.0661 REMARK 3 L13: 1.0261 L23: -1.8391 REMARK 3 S TENSOR REMARK 3 S11: -0.4318 S12: 0.6790 S13: 0.3772 REMARK 3 S21: -0.0317 S22: 0.0846 S23: -0.0325 REMARK 3 S31: -0.2156 S32: 0.3196 S33: 0.5208 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): 21.4782 -3.9702 2.1687 REMARK 3 T TENSOR REMARK 3 T11: 0.4480 T22: 0.7573 REMARK 3 T33: 0.7687 T12: 0.0156 REMARK 3 T13: 0.0620 T23: 0.1404 REMARK 3 L TENSOR REMARK 3 L11: 7.4876 L22: 8.6536 REMARK 3 L33: 2.5018 L12: 0.3469 REMARK 3 L13: -3.5369 L23: 0.1206 REMARK 3 S TENSOR REMARK 3 S11: 0.4642 S12: -1.4392 S13: -0.0070 REMARK 3 S21: 0.2557 S22: 0.8687 S23: 0.3663 REMARK 3 S31: -0.6366 S32: 0.3414 S33: -1.5391 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YWZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292107231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS, POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15149 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 65.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.23400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1Q3O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7 PEG 400 35%, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.28300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.45200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.98650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.45200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.28300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.98650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO B 760 REMARK 465 ASP B 761 REMARK 465 MET B 762 REMARK 465 ALA A 683 REMARK 465 GLN A 684 REMARK 465 THR A 685 REMARK 465 PRO A 686 REMARK 465 ILE A 687 REMARK 465 GLU A 688 REMARK 465 HIS A 759 REMARK 465 PRO A 760 REMARK 465 ASP A 761 REMARK 465 MET A 762 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B 759 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 682 CG CD CE NZ REMARK 470 GLU A 689 CG CD OE1 OE2 REMARK 470 ARG A 758 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C THR A 802 N ARG A 803 1.34 REMARK 500 C ARG B 804 N LEU B 805 1.34 REMARK 500 C ARG A 803 N LEU A 804 1.34 REMARK 500 C THR B 803 N ARG B 804 1.34 REMARK 500 O HOH A 931 O HOH A 939 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 671 30.33 -91.82 REMARK 500 SER A 671 30.79 -91.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 804 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 THR B 803 REMARK 610 ARG B 804 REMARK 610 THR A 802 REMARK 610 ARG A 803 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ARG B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LEU B 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ARG A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LEU A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PWN A 801 and THR A REMARK 800 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PWN B 802 and THR B REMARK 800 803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6YX0 RELATED DB: PDB REMARK 900 RELATED ID: 6YX2 RELATED DB: PDB REMARK 900 RELATED ID: 6YX1 RELATED DB: PDB DBREF 6YWZ B 654 762 UNP Q9Y566 SHAN1_HUMAN 654 762 DBREF 6YWZ A 654 762 UNP Q9Y566 SHAN1_HUMAN 654 762 SEQADV 6YWZ GLY B 651 UNP Q9Y566 EXPRESSION TAG SEQADV 6YWZ PRO B 652 UNP Q9Y566 EXPRESSION TAG SEQADV 6YWZ LEU B 653 UNP Q9Y566 EXPRESSION TAG SEQADV 6YWZ GLY A 651 UNP Q9Y566 EXPRESSION TAG SEQADV 6YWZ PRO A 652 UNP Q9Y566 EXPRESSION TAG SEQADV 6YWZ LEU A 653 UNP Q9Y566 EXPRESSION TAG SEQRES 1 B 112 GLY PRO LEU GLY SER ASP TYR ILE ILE LYS GLU LYS THR SEQRES 2 B 112 VAL LEU LEU GLN LYS LYS ASP SER GLU GLY PHE GLY PHE SEQRES 3 B 112 VAL LEU ARG GLY ALA LYS ALA GLN THR PRO ILE GLU GLU SEQRES 4 B 112 PHE THR PRO THR PRO ALA PHE PRO ALA LEU GLN TYR LEU SEQRES 5 B 112 GLU SER VAL ASP GLU GLY GLY VAL ALA TRP ARG ALA GLY SEQRES 6 B 112 LEU ARG MET GLY ASP PHE LEU ILE GLU VAL ASN GLY GLN SEQRES 7 B 112 ASN VAL VAL LYS VAL GLY HIS ARG GLN VAL VAL ASN MET SEQRES 8 B 112 ILE ARG GLN GLY GLY ASN THR LEU MET VAL LYS VAL VAL SEQRES 9 B 112 MET VAL THR ARG HIS PRO ASP MET SEQRES 1 A 112 GLY PRO LEU GLY SER ASP TYR ILE ILE LYS GLU LYS THR SEQRES 2 A 112 VAL LEU LEU GLN LYS LYS ASP SER GLU GLY PHE GLY PHE SEQRES 3 A 112 VAL LEU ARG GLY ALA LYS ALA GLN THR PRO ILE GLU GLU SEQRES 4 A 112 PHE THR PRO THR PRO ALA PHE PRO ALA LEU GLN TYR LEU SEQRES 5 A 112 GLU SER VAL ASP GLU GLY GLY VAL ALA TRP ARG ALA GLY SEQRES 6 A 112 LEU ARG MET GLY ASP PHE LEU ILE GLU VAL ASN GLY GLN SEQRES 7 A 112 ASN VAL VAL LYS VAL GLY HIS ARG GLN VAL VAL ASN MET SEQRES 8 A 112 ILE ARG GLN GLY GLY ASN THR LEU MET VAL LYS VAL VAL SEQRES 9 A 112 MET VAL THR ARG HIS PRO ASP MET HET PEG B 801 7 HET PWN B 802 18 HET THR B 803 7 HET ARG B 804 11 HET LEU B 805 9 HET PWN A 801 18 HET THR A 802 7 HET ARG A 803 11 HET LEU A 804 9 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PWN 2-[(~{E})-(4-OXIDANYLIDENEBUTANOYLHYDRAZINYLIDENE) HETNAM 2 PWN METHYL]BENZOIC ACID HETNAM THR THREONINE HETNAM ARG ARGININE HETNAM LEU LEUCINE FORMUL 3 PEG C4 H10 O3 FORMUL 4 PWN 2(C12 H12 N2 O4) FORMUL 5 THR 2(C4 H9 N O3) FORMUL 6 ARG 2(C6 H15 N4 O2 1+) FORMUL 7 LEU 2(C6 H13 N O2) FORMUL 12 HOH *76(H2 O) HELIX 1 AA1 GLY B 709 GLY B 715 1 7 HELIX 2 AA2 GLY B 734 GLY B 745 1 12 HELIX 3 AA3 GLY A 709 GLY A 715 1 7 HELIX 4 AA4 GLY A 734 GLY A 745 1 12 SHEET 1 AA1 8 GLN B 728 ASN B 729 0 SHEET 2 AA1 8 PHE B 721 VAL B 725 -1 N VAL B 725 O GLN B 728 SHEET 3 AA1 8 THR B 748 ARG B 758 -1 O LYS B 752 N ILE B 723 SHEET 4 AA1 8 ASP B 656 GLN B 667 -1 N ILE B 658 O THR B 757 SHEET 5 AA1 8 ASP A 656 GLN A 667 -1 O ILE A 659 N TYR B 657 SHEET 6 AA1 8 THR A 748 THR A 757 -1 O LEU A 749 N LEU A 666 SHEET 7 AA1 8 PHE A 721 VAL A 725 -1 N ILE A 723 O LYS A 752 SHEET 8 AA1 8 GLN A 728 ASN A 729 -1 O GLN A 728 N VAL A 725 SHEET 1 AA2 2 PHE B 676 GLY B 680 0 SHEET 2 AA2 2 GLN B 700 VAL B 705 -1 O TYR B 701 N ARG B 679 SHEET 1 AA3 2 PHE A 676 GLY A 680 0 SHEET 2 AA3 2 GLN A 700 VAL A 705 -1 O TYR A 701 N ARG A 679 LINK C14 PWN B 802 N THR B 803 1555 1555 1.33 LINK C14 PWN A 801 N THR A 802 1555 1555 1.34 SITE 1 AC1 1 ARG B 804 SITE 1 AC2 5 VAL B 677 ASP B 706 PEG B 801 THR B 803 SITE 2 AC2 5 LEU B 805 SITE 1 AC3 7 GLY B 673 PHE B 674 GLY B 675 PHE B 676 SITE 2 AC3 7 ILE B 742 THR B 803 ARG B 804 SITE 1 AC4 4 PHE A 676 ASP A 706 THR A 802 LEU A 804 SITE 1 AC5 6 GLY A 673 PHE A 674 GLY A 675 PHE A 676 SITE 2 AC5 6 ILE A 742 ARG A 803 SITE 1 AC6 8 VAL A 677 LEU A 678 ARG A 679 GLY A 680 SITE 2 AC6 8 ALA A 681 GLN A 700 HIS A 735 ARG A 803 SITE 1 AC7 12 VAL B 677 LEU B 678 ARG B 679 GLY B 680 SITE 2 AC7 12 LYS B 682 ALA B 683 HIS B 735 ARG B 743 SITE 3 AC7 12 ARG B 804 LEU B 805 HOH B 902 HOH B 914 CRYST1 44.566 65.973 86.904 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022439 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015158 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011507 0.00000