HEADER PEPTIDE BINDING PROTEIN 30-APR-20 6YX0 TITLE CRYSTAL STRUCTURE OF SHANK1 PDZ IN COMPLEX WITH A PEPTIDE-SMALL TITLE 2 MOLECULE HYBRID COMPND MOL_ID: 1; COMPND 2 MOLECULE: SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SHANK1,SOMATOSTATIN RECEPTOR-INTERACTING PROTEIN,SSTRIP; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PWQ-THR-ARG-LEU; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SHANK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS PROTEIN PROTEIN INTERACTIONS PDZ DOMAIN HYBRID STRUCTURES, FRAGMENT- KEYWDS 2 BASED DRUG DISCOVERY, BETA-SHEETS, ACYLHYDRAZONE, PEPTIDE BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.HEGEDUS,F.HOBOR,D.K.SHOEMARK,S.CELIS,C.H.TRINH,R.B.SESSIONS, AUTHOR 2 T.A.EDWARDS,A.J.WILSON REVDAT 3 24-JAN-24 6YX0 1 REMARK REVDAT 2 07-JUL-21 6YX0 1 JRNL REVDAT 1 20-JAN-21 6YX0 0 JRNL AUTH Z.HEGEDUS,F.HOBOR,D.K.SHOEMARK,S.CELIS,L.Y.LIAN,C.H.TRINH, JRNL AUTH 2 R.B.SESSIONS,T.A.EDWARDS,A.J.WILSON JRNL TITL IDENTIFICATION OF BETA-STRAND MEDIATED PROTEIN-PROTEIN JRNL TITL 2 INTERACTION INHIBITORS USING LIGAND-DIRECTED FRAGMENT JRNL TITL 3 LIGATION. JRNL REF CHEM SCI V. 12 2286 2021 JRNL REFN ISSN 2041-6520 JRNL PMID 34163995 JRNL DOI 10.1039/D0SC05694D REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0026 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 36185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1833 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2547 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.3719 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.3987 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1687 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 179 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): 0.3256 11.5685 3.8249 REMARK 3 T TENSOR REMARK 3 T11: 0.7738 T22: 0.6679 REMARK 3 T33: 0.5801 T12: 0.2148 REMARK 3 T13: 0.1763 T23: 0.1563 REMARK 3 L TENSOR REMARK 3 L11: 4.7920 L22: 1.7916 REMARK 3 L33: 3.8081 L12: -2.2867 REMARK 3 L13: -3.0183 L23: 2.5247 REMARK 3 S TENSOR REMARK 3 S11: 0.3316 S12: 1.1622 S13: 0.3605 REMARK 3 S21: -0.6942 S22: -0.3875 S23: -0.5069 REMARK 3 S31: -0.9007 S32: -0.5736 S33: -0.2776 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): -12.0924 4.0968 31.9174 REMARK 3 T TENSOR REMARK 3 T11: 0.3134 T22: 0.2904 REMARK 3 T33: 0.3078 T12: -0.0015 REMARK 3 T13: 0.0050 T23: -0.0599 REMARK 3 L TENSOR REMARK 3 L11: 4.4086 L22: 1.6416 REMARK 3 L33: 2.8089 L12: -0.3271 REMARK 3 L13: -1.0836 L23: -0.2110 REMARK 3 S TENSOR REMARK 3 S11: 0.3144 S12: -0.5367 S13: 0.2936 REMARK 3 S21: 0.0163 S22: 0.0049 S23: 0.1455 REMARK 3 S31: -0.2583 S32: 0.0341 S33: -0.1634 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): -10.3896 -2.9042 15.2966 REMARK 3 T TENSOR REMARK 3 T11: 0.4649 T22: 0.5987 REMARK 3 T33: 0.4711 T12: 0.0880 REMARK 3 T13: -0.0740 T23: -0.2327 REMARK 3 L TENSOR REMARK 3 L11: 5.7908 L22: 0.7833 REMARK 3 L33: 1.1907 L12: -1.0389 REMARK 3 L13: -1.8258 L23: -0.3545 REMARK 3 S TENSOR REMARK 3 S11: 0.2447 S12: 2.0730 S13: -1.0621 REMARK 3 S21: -0.6516 S22: -0.4823 S23: 0.1386 REMARK 3 S31: 0.1044 S32: -1.0258 S33: 0.0452 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): -14.5427 4.9756 24.8051 REMARK 3 T TENSOR REMARK 3 T11: 0.3314 T22: 0.3360 REMARK 3 T33: 0.3022 T12: 0.0434 REMARK 3 T13: -0.0306 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 5.8817 L22: 2.9313 REMARK 3 L33: 3.9043 L12: -0.4902 REMARK 3 L13: -1.5168 L23: 0.2711 REMARK 3 S TENSOR REMARK 3 S11: 0.2061 S12: 0.4911 S13: -0.0790 REMARK 3 S21: -0.2186 S22: -0.1206 S23: 0.3367 REMARK 3 S31: -0.3057 S32: -0.4700 S33: -0.1114 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): -11.0728 -9.2125 26.2077 REMARK 3 T TENSOR REMARK 3 T11: 0.3864 T22: 0.2129 REMARK 3 T33: 0.6098 T12: -0.0717 REMARK 3 T13: 0.0310 T23: -0.1488 REMARK 3 L TENSOR REMARK 3 L11: 3.5112 L22: 1.7370 REMARK 3 L33: 3.8613 L12: 0.6206 REMARK 3 L13: -1.8396 L23: -0.0392 REMARK 3 S TENSOR REMARK 3 S11: -0.6855 S12: 0.2510 S13: -1.6136 REMARK 3 S21: -0.0874 S22: -0.0737 S23: 0.2443 REMARK 3 S31: 1.1912 S32: -0.1365 S33: 0.1111 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): -8.1818 4.1199 24.3597 REMARK 3 T TENSOR REMARK 3 T11: 0.3136 T22: 0.2489 REMARK 3 T33: 0.3161 T12: 0.0209 REMARK 3 T13: -0.0034 T23: -0.0437 REMARK 3 L TENSOR REMARK 3 L11: 6.3059 L22: 2.9475 REMARK 3 L33: 5.3970 L12: 0.4996 REMARK 3 L13: -3.5093 L23: -1.3027 REMARK 3 S TENSOR REMARK 3 S11: 0.4206 S12: 0.0023 S13: 0.3990 REMARK 3 S21: -0.2254 S22: -0.0724 S23: 0.1020 REMARK 3 S31: -0.1225 S32: 0.3434 S33: -0.0989 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): -21.9445 -2.4000 27.1928 REMARK 3 T TENSOR REMARK 3 T11: 0.3889 T22: 0.5436 REMARK 3 T33: 0.6026 T12: -0.0394 REMARK 3 T13: 0.0230 T23: -0.1145 REMARK 3 L TENSOR REMARK 3 L11: 6.2729 L22: 2.2338 REMARK 3 L33: 2.3692 L12: 3.2859 REMARK 3 L13: 3.6198 L23: 1.5190 REMARK 3 S TENSOR REMARK 3 S11: 0.1048 S12: 0.2366 S13: 0.0800 REMARK 3 S21: 0.1178 S22: 0.3330 S23: -0.0608 REMARK 3 S31: 0.3946 S32: -0.8325 S33: -0.7426 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): 9.1497 6.5585 3.1224 REMARK 3 T TENSOR REMARK 3 T11: 0.3152 T22: 0.3789 REMARK 3 T33: 0.3287 T12: -0.0082 REMARK 3 T13: 0.0124 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 2.3944 L22: 0.6000 REMARK 3 L33: 1.1294 L12: -0.0322 REMARK 3 L13: -1.8400 L23: -0.1520 REMARK 3 S TENSOR REMARK 3 S11: 0.2849 S12: 0.2912 S13: 0.3250 REMARK 3 S21: 0.0018 S22: -0.0560 S23: -0.0434 REMARK 3 S31: -0.3306 S32: -0.0462 S33: -0.1458 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): 15.6480 -5.4809 9.2175 REMARK 3 T TENSOR REMARK 3 T11: 0.4045 T22: 0.5274 REMARK 3 T33: 0.4266 T12: -0.0077 REMARK 3 T13: 0.0001 T23: 0.0851 REMARK 3 L TENSOR REMARK 3 L11: 2.8886 L22: 2.3730 REMARK 3 L33: 3.6619 L12: 0.5804 REMARK 3 L13: -1.7012 L23: -1.6829 REMARK 3 S TENSOR REMARK 3 S11: -0.0505 S12: -0.2950 S13: -0.6739 REMARK 3 S21: 0.2833 S22: -0.1439 S23: -0.2655 REMARK 3 S31: -0.0823 S32: 0.3757 S33: 0.2371 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): 5.7883 -13.6545 15.2520 REMARK 3 T TENSOR REMARK 3 T11: 0.5389 T22: 0.3090 REMARK 3 T33: 0.6155 T12: 0.0714 REMARK 3 T13: 0.1346 T23: 0.0334 REMARK 3 L TENSOR REMARK 3 L11: 2.4598 L22: 3.7344 REMARK 3 L33: 2.0057 L12: -2.4748 REMARK 3 L13: 0.9124 L23: -2.3587 REMARK 3 S TENSOR REMARK 3 S11: -0.1011 S12: -0.2994 S13: 0.4516 REMARK 3 S21: -0.0680 S22: 0.3732 S23: 1.0708 REMARK 3 S31: 0.8720 S32: -0.0094 S33: -0.2067 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): 12.5149 4.0533 5.3544 REMARK 3 T TENSOR REMARK 3 T11: 0.3327 T22: 0.3367 REMARK 3 T33: 0.3250 T12: -0.0461 REMARK 3 T13: -0.0140 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 2.8838 L22: 4.2900 REMARK 3 L33: 5.0812 L12: -0.2821 REMARK 3 L13: -1.4170 L23: -0.5720 REMARK 3 S TENSOR REMARK 3 S11: 0.0642 S12: -0.0738 S13: 0.1045 REMARK 3 S21: 0.2741 S22: -0.1416 S23: -0.0670 REMARK 3 S31: -0.4173 S32: 0.5996 S33: 0.0258 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): 10.9647 -8.3547 0.6924 REMARK 3 T TENSOR REMARK 3 T11: 0.4082 T22: 0.3138 REMARK 3 T33: 0.4338 T12: 0.0295 REMARK 3 T13: 0.0738 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 2.5945 L22: 3.9513 REMARK 3 L33: 5.9394 L12: 0.4432 REMARK 3 L13: -1.4694 L23: -1.0830 REMARK 3 S TENSOR REMARK 3 S11: -0.5289 S12: 0.1610 S13: -0.9388 REMARK 3 S21: -0.2298 S22: 0.0197 S23: -0.2453 REMARK 3 S31: 1.2349 S32: 0.1021 S33: 0.3368 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): 7.2868 7.0635 6.5406 REMARK 3 T TENSOR REMARK 3 T11: 0.3758 T22: 0.3433 REMARK 3 T33: 0.4014 T12: -0.0339 REMARK 3 T13: 0.0379 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 3.3701 L22: 2.5338 REMARK 3 L33: 3.6651 L12: -0.1368 REMARK 3 L13: -1.0973 L23: 1.2222 REMARK 3 S TENSOR REMARK 3 S11: 0.2442 S12: -0.0928 S13: 0.3465 REMARK 3 S21: 0.2417 S22: -0.1644 S23: 0.1973 REMARK 3 S31: -0.3522 S32: -0.4570 S33: 0.0433 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : NULL NULL NULL NULL REMARK 3 ORIGIN FOR THE GROUP (A): 21.9291 -1.6794 -0.1420 REMARK 3 T TENSOR REMARK 3 T11: 0.4335 T22: 0.7636 REMARK 3 T33: 0.4604 T12: 0.0400 REMARK 3 T13: 0.0040 T23: 0.0720 REMARK 3 L TENSOR REMARK 3 L11: 7.5938 L22: 2.2754 REMARK 3 L33: 2.2840 L12: -3.3048 REMARK 3 L13: 3.4658 L23: -0.7402 REMARK 3 S TENSOR REMARK 3 S11: 0.1619 S12: 0.0639 S13: 0.6046 REMARK 3 S21: -0.1262 S22: 0.1723 S23: -0.5266 REMARK 3 S31: 0.2028 S32: 0.9175 S33: -0.5235 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YX0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-APR-20. REMARK 100 THE DEPOSITION ID IS D_1292105560. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36380 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 88.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 1.29100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1Q3O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7 PEG 400 35%, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.15250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.14000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.47350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.14000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.15250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.47350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 682 REMARK 465 ALA A 683 REMARK 465 GLN A 684 REMARK 465 THR A 685 REMARK 465 PRO A 686 REMARK 465 ILE A 687 REMARK 465 GLU A 688 REMARK 465 HIS A 759 REMARK 465 PRO A 760 REMARK 465 ASP A 761 REMARK 465 MET A 762 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 689 CG CD OE1 OE2 REMARK 470 ASP B 761 CG OD1 OD2 REMARK 470 MET B 762 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 696 70.19 -160.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PWQ C 901 and THR C REMARK 800 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PWQ D 901 and THR D REMARK 800 802 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6YWZ RELATED DB: PDB REMARK 900 RELATED ID: 6YX1 RELATED DB: PDB REMARK 900 RELATED ID: 6YX2 RELATED DB: PDB DBREF 6YX0 A 654 762 UNP Q9Y566 SHAN1_HUMAN 654 762 DBREF 6YX0 B 654 762 UNP Q9Y566 SHAN1_HUMAN 654 762 DBREF 6YX0 C 802 804 PDB 6YX0 6YX0 802 804 DBREF 6YX0 D 802 804 PDB 6YX0 6YX0 802 804 SEQADV 6YX0 GLY A 651 UNP Q9Y566 EXPRESSION TAG SEQADV 6YX0 PRO A 652 UNP Q9Y566 EXPRESSION TAG SEQADV 6YX0 LEU A 653 UNP Q9Y566 EXPRESSION TAG SEQADV 6YX0 GLY B 651 UNP Q9Y566 EXPRESSION TAG SEQADV 6YX0 PRO B 652 UNP Q9Y566 EXPRESSION TAG SEQADV 6YX0 LEU B 653 UNP Q9Y566 EXPRESSION TAG SEQRES 1 A 112 GLY PRO LEU GLY SER ASP TYR ILE ILE LYS GLU LYS THR SEQRES 2 A 112 VAL LEU LEU GLN LYS LYS ASP SER GLU GLY PHE GLY PHE SEQRES 3 A 112 VAL LEU ARG GLY ALA LYS ALA GLN THR PRO ILE GLU GLU SEQRES 4 A 112 PHE THR PRO THR PRO ALA PHE PRO ALA LEU GLN TYR LEU SEQRES 5 A 112 GLU SER VAL ASP GLU GLY GLY VAL ALA TRP ARG ALA GLY SEQRES 6 A 112 LEU ARG MET GLY ASP PHE LEU ILE GLU VAL ASN GLY GLN SEQRES 7 A 112 ASN VAL VAL LYS VAL GLY HIS ARG GLN VAL VAL ASN MET SEQRES 8 A 112 ILE ARG GLN GLY GLY ASN THR LEU MET VAL LYS VAL VAL SEQRES 9 A 112 MET VAL THR ARG HIS PRO ASP MET SEQRES 1 B 112 GLY PRO LEU GLY SER ASP TYR ILE ILE LYS GLU LYS THR SEQRES 2 B 112 VAL LEU LEU GLN LYS LYS ASP SER GLU GLY PHE GLY PHE SEQRES 3 B 112 VAL LEU ARG GLY ALA LYS ALA GLN THR PRO ILE GLU GLU SEQRES 4 B 112 PHE THR PRO THR PRO ALA PHE PRO ALA LEU GLN TYR LEU SEQRES 5 B 112 GLU SER VAL ASP GLU GLY GLY VAL ALA TRP ARG ALA GLY SEQRES 6 B 112 LEU ARG MET GLY ASP PHE LEU ILE GLU VAL ASN GLY GLN SEQRES 7 B 112 ASN VAL VAL LYS VAL GLY HIS ARG GLN VAL VAL ASN MET SEQRES 8 B 112 ILE ARG GLN GLY GLY ASN THR LEU MET VAL LYS VAL VAL SEQRES 9 B 112 MET VAL THR ARG HIS PRO ASP MET SEQRES 1 C 3 THR ARG LEU SEQRES 1 D 3 THR ARG LEU HET PWQ C 901 18 HET PWQ D 901 18 HETNAM PWQ 4-[[2-(4-OXIDANYLIDENEBUTANOYL) HETNAM 2 PWQ HYDRAZINYL]METHYL]BENZOIC ACID FORMUL 5 PWQ 2(C12 H12 N2 O4) FORMUL 7 HOH *179(H2 O) HELIX 1 AA1 GLY A 709 GLY A 715 1 7 HELIX 2 AA2 GLY A 734 GLY A 745 1 12 HELIX 3 AA3 GLY B 709 GLY B 715 1 7 HELIX 4 AA4 GLY B 734 GLY B 745 1 12 SHEET 1 AA1 8 GLN A 728 ASN A 729 0 SHEET 2 AA1 8 PHE A 721 VAL A 725 -1 N VAL A 725 O GLN A 728 SHEET 3 AA1 8 THR A 748 THR A 757 -1 O LYS A 752 N ILE A 723 SHEET 4 AA1 8 ASP A 656 GLN A 667 -1 N ILE A 658 O THR A 757 SHEET 5 AA1 8 ASP B 656 GLN B 667 -1 O ILE B 659 N TYR A 657 SHEET 6 AA1 8 THR B 748 ARG B 758 -1 O THR B 757 N ILE B 658 SHEET 7 AA1 8 PHE B 721 VAL B 725 -1 N PHE B 721 O VAL B 754 SHEET 8 AA1 8 GLN B 728 ASN B 729 -1 O GLN B 728 N VAL B 725 SHEET 1 AA2 3 GLN A 700 VAL A 705 0 SHEET 2 AA2 3 PHE A 676 GLY A 680 -1 N ARG A 679 O TYR A 701 SHEET 3 AA2 3 ARG C 803 LEU C 804 -1 O LEU C 804 N PHE A 676 SHEET 1 AA3 2 PHE B 676 GLY B 680 0 SHEET 2 AA3 2 GLN B 700 VAL B 705 -1 O TYR B 701 N ARG B 679 LINK N THR C 802 C14 PWQ C 901 1555 1555 1.43 LINK N THR D 802 C14 PWQ D 901 1555 1555 1.43 SITE 1 AC1 12 VAL A 677 LEU A 678 ARG A 679 HIS A 735 SITE 2 AC1 12 GLY B 680 ALA B 681 LYS B 682 ALA B 683 SITE 3 AC1 12 HOH B 916 ARG C 803 LEU C 804 PWQ D 901 SITE 1 AC2 10 VAL B 677 LEU B 678 ARG B 679 HIS B 735 SITE 2 AC2 10 ARG B 736 ARG B 743 HOH B 944 PWQ C 901 SITE 3 AC2 10 ARG D 803 LEU D 804 CRYST1 44.305 64.947 88.280 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022571 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015397 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011328 0.00000