HEADER CELL INVASION 30-APR-20 6YX5 TITLE STRUCTURE OF DRRA FROM LEGIONELLA PNEUMOPHILIA IN COMPLEX WITH HUMAN TITLE 2 RAB8A COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB-8A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MULTIFUNCTIONAL VIRULENCE EFFECTOR PROTEIN DRRA; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: RESIDUE NUMBER 1 DISORDERED L197C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAB8A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 10 ORGANISM_TAXID: 446; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS VESICULAR TRAFFICKING VIRULENCE FACTOR, CELL INVASION EXPDTA X-RAY DIFFRACTION AUTHOR S.SCHNEIDER,J.DU,M.K.VON WRISBERG,K.LANG,A.ITZEN REVDAT 3 24-JAN-24 6YX5 1 REMARK REVDAT 2 03-FEB-21 6YX5 1 JRNL REVDAT 1 23-DEC-20 6YX5 0 JRNL AUTH J.DU,M.V.WRISBERG,B.GULEN,M.STAHL,C.PETT,C.HEDBERG,K.LANG, JRNL AUTH 2 S.SCHNEIDER,A.ITZEN JRNL TITL RAB1-AMPYLATION BY LEGIONELLA DRRA IS ALLOSTERICALLY JRNL TITL 2 ACTIVATED BY RAB1. JRNL REF NAT COMMUN V. 12 460 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33469029 JRNL DOI 10.1038/S41467-020-20702-2 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 46650 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2441 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.14 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3308 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.3500 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4115 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 116 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -0.07000 REMARK 3 B33 (A**2) : 0.22000 REMARK 3 B12 (A**2) : -0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.174 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.681 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4313 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4008 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5830 ; 1.256 ; 1.666 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9336 ; 1.148 ; 1.598 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 512 ; 6.091 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 232 ;33.087 ;23.017 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 805 ;14.769 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;16.777 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 572 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4696 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 866 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 175 REMARK 3 ORIGIN FOR THE GROUP (A): -20.7110 -71.8810 0.3750 REMARK 3 T TENSOR REMARK 3 T11: 0.1858 T22: 0.1669 REMARK 3 T33: 0.0239 T12: 0.0655 REMARK 3 T13: -0.0308 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 2.1061 L22: 3.0705 REMARK 3 L33: 1.9861 L12: -0.5065 REMARK 3 L13: -0.1095 L23: -0.4253 REMARK 3 S TENSOR REMARK 3 S11: 0.0784 S12: 0.3427 S13: -0.1944 REMARK 3 S21: -0.5316 S22: -0.1020 S23: 0.0813 REMARK 3 S31: 0.1824 S32: 0.0074 S33: 0.0236 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 14 B 352 REMARK 3 ORIGIN FOR THE GROUP (A): -11.6430 -53.4730 22.7610 REMARK 3 T TENSOR REMARK 3 T11: 0.1595 T22: 0.1828 REMARK 3 T33: 0.0466 T12: 0.0153 REMARK 3 T13: 0.0083 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 2.3614 L22: 0.9877 REMARK 3 L33: 1.0750 L12: -1.0380 REMARK 3 L13: 0.4667 L23: -0.2533 REMARK 3 S TENSOR REMARK 3 S11: -0.0890 S12: -0.0532 S13: 0.2293 REMARK 3 S21: 0.0512 S22: 0.0702 S23: -0.2037 REMARK 3 S31: -0.2218 S32: 0.0919 S33: 0.0188 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6YX5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108436. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49091 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.140 REMARK 200 RESOLUTION RANGE LOW (A) : 48.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.30 REMARK 200 R MERGE FOR SHELL (I) : 2.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3NKU, 4LHV REMARK 200 REMARK 200 REMARK: HEXAGONAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BICINE, PH 9, 2.4M AMMONIUM REMARK 280 SULPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 176 REMARK 465 GLY B 13 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 68 OE1 GLU A 68 4555 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 122 36.67 71.79 REMARK 500 VAL A 125 62.91 -100.01 REMARK 500 ASN B 54 41.26 -100.38 REMARK 500 MET B 174 3.63 -60.52 REMARK 500 ASP B 177 71.44 67.24 REMARK 500 THR B 187 49.58 -99.94 REMARK 500 TYR B 195 -12.00 -144.18 REMARK 500 ILE B 244 -64.69 -130.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 22 OG1 REMARK 620 2 THR A 40 OG1 90.2 REMARK 620 3 GNP A 202 O2B 90.6 177.7 REMARK 620 4 GNP A 202 O2G 178.4 88.3 91.0 REMARK 620 5 HOH A 304 O 89.3 88.0 89.8 90.9 REMARK 620 6 HOH A 312 O 89.8 94.2 88.0 90.0 177.6 REMARK 620 N 1 2 3 4 5 DBREF1 6YX5 A 6 176 UNP A0A1U7REJ8_MESAU DBREF2 6YX5 A A0A1U7REJ8 6 176 DBREF 6YX5 B 16 352 UNP Q29ST3 DRRA_LEGPN 16 352 SEQADV 6YX5 SER A 3 UNP A0A1U7REJ EXPRESSION TAG SEQADV 6YX5 HIS A 4 UNP A0A1U7REJ EXPRESSION TAG SEQADV 6YX5 MET A 5 UNP A0A1U7REJ EXPRESSION TAG SEQADV 6YX5 GLY B 13 UNP Q29ST3 EXPRESSION TAG SEQADV 6YX5 HIS B 14 UNP Q29ST3 EXPRESSION TAG SEQADV 6YX5 MET B 15 UNP Q29ST3 EXPRESSION TAG SEQADV 6YX5 CYS B 197 UNP Q29ST3 LEU 197 ENGINEERED MUTATION SEQRES 1 A 174 SER HIS MET ASP TYR LEU PHE LYS LEU LEU LEU ILE GLY SEQRES 2 A 174 ASP SER GLY VAL GLY LYS THR CYS VAL LEU PHE ARG PHE SEQRES 3 A 174 SER GLU ASP ALA PHE ASN SER THR PHE ILE SER THR ILE SEQRES 4 A 174 GLY ILE ASP PHE LYS ILE ARG THR ILE GLU LEU ASP GLY SEQRES 5 A 174 LYS ARG ILE LYS LEU GLN ILE TRP ASP THR ALA GLY GLN SEQRES 6 A 174 GLU ARG PHE ARG THR ILE THR THR ALA TYR TYR ARG GLY SEQRES 7 A 174 ALA MET GLY ILE MET LEU VAL TYR ASP ILE THR ASN GLU SEQRES 8 A 174 LYS SER PHE ASP ASN ILE ARG ASN TRP ILE ARG ASN ILE SEQRES 9 A 174 GLU GLU HIS ALA SER ALA ASP VAL GLU LYS MET ILE LEU SEQRES 10 A 174 GLY ASN LYS CYS ASP VAL ASN ASP LYS ARG GLN VAL SER SEQRES 11 A 174 LYS GLU ARG GLY GLU LYS LEU ALA LEU ASP TYR GLY ILE SEQRES 12 A 174 LYS PHE MET GLU THR SER ALA LYS ALA ASN ILE ASN VAL SEQRES 13 A 174 GLU ASN ALA PHE PHE THR LEU ALA ARG ASP ILE LYS ALA SEQRES 14 A 174 LYS MET ASP LYS LYS SEQRES 1 B 340 GLY HIS MET PHE GLY SER LEU TYR SER ASP GLU ARG ASP SEQRES 2 B 340 LYS PRO LEU LEU SER PRO THR ALA GLN LYS LYS PHE GLU SEQRES 3 B 340 GLU TYR GLN ASN LYS LEU ALA ASN LEU SER LYS ILE ILE SEQRES 4 B 340 ARG GLU ASN GLU GLY ASN GLU VAL SER PRO TRP GLN GLU SEQRES 5 B 340 TRP GLU ASN GLY LEU ARG GLN ILE TYR LYS GLU MET ILE SEQRES 6 B 340 TYR ASP ALA PHE ASP ALA LEU GLY VAL GLU MET PRO LYS SEQRES 7 B 340 ASP MET GLU VAL HIS PHE ALA GLY SER LEU ALA LYS ALA SEQRES 8 B 340 GLN ALA THR GLU TYR SER ASP LEU ASP ALA PHE VAL ILE SEQRES 9 B 340 VAL LYS ASN ASP GLU ASP ILE LYS LYS VAL LYS PRO VAL SEQRES 10 B 340 PHE ASP ALA LEU ASN ASN LEU CYS GLN ARG ILE PHE THR SEQRES 11 B 340 ALA SER ASN GLN ILE TYR PRO ASP PRO ILE GLY ILE ASN SEQRES 12 B 340 PRO SER ARG LEU ILE GLY THR PRO ASP ASP LEU PHE GLY SEQRES 13 B 340 MET LEU LYS ASP GLY MET VAL ALA ASP VAL GLU ALA THR SEQRES 14 B 340 ALA MET SER ILE LEU THR SER LYS PRO VAL LEU PRO ARG SEQRES 15 B 340 TYR GLU CYS GLY GLU GLU LEU ARG ASP LYS ILE LYS GLN SEQRES 16 B 340 GLU PRO SER PHE SER ASN MET VAL SER ALA LYS LYS PHE SEQRES 17 B 340 TYR ASN LYS ALA ILE LYS ASP PHE THR ALA PRO LYS GLU SEQRES 18 B 340 GLY ALA GLU VAL VAL SER VAL LYS THR HIS ILE MET ARG SEQRES 19 B 340 PRO ILE ASP PHE MET LEU MET GLY LEU ARG GLU GLU PHE SEQRES 20 B 340 ASN LEU TYR SER GLU ASP GLY ALA HIS LEU SER ALA PRO SEQRES 21 B 340 GLY THR ILE ARG LEU LEU ARG GLU LYS ASN LEU LEU PRO SEQRES 22 B 340 GLU GLU GLN ILE ALA ARG ILE GLU SER VAL TYR ASN GLN SEQRES 23 B 340 ALA MET SER LYS ARG PHE GLU LEU HIS ALA GLU HIS LYS SEQRES 24 B 340 LYS GLU HIS ASP GLU MET PRO TYR SER ASP ALA LYS ALA SEQRES 25 B 340 MET LEU ASP GLU VAL ALA LYS ILE ARG GLU LEU GLY VAL SEQRES 26 B 340 GLN ARG VAL THR ARG ILE GLU ASN LEU GLU ASN ALA LYS SEQRES 27 B 340 LYS LEU HET MG A 201 1 HET GNP A 202 32 HET GLC A 203 12 HET LJN A 204 22 HET SO4 A 205 5 HET SO4 A 206 5 HET GLC B 401 12 HET GLC B 402 12 HET SO4 B 403 5 HET SO4 B 404 5 HET SO4 B 405 5 HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM LJN [(2~{R},3~{S},4~{R},5~{R})-5-[4-(ACETAMIDOMETHYL)-1,2, HETNAM 2 LJN 3-TRIAZOL-1-YL]-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHYL HETNAM 3 LJN DIHYDROGEN PHOSPHATE HETNAM SO4 SULFATE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 MG MG 2+ FORMUL 4 GNP C10 H17 N6 O13 P3 FORMUL 5 GLC 3(C6 H12 O6) FORMUL 6 LJN C10 H17 N4 O8 P FORMUL 7 SO4 5(O4 S 2-) FORMUL 14 HOH *113(H2 O) HELIX 1 AA1 GLY A 20 ASP A 31 1 12 HELIX 2 AA2 GLN A 67 ARG A 69 5 3 HELIX 3 AA3 PHE A 70 ALA A 76 1 7 HELIX 4 AA4 ASN A 92 ASN A 98 1 7 HELIX 5 AA5 ASN A 98 ALA A 110 1 13 HELIX 6 AA6 VAL A 125 ARG A 129 5 5 HELIX 7 AA7 SER A 132 TYR A 143 1 12 HELIX 8 AA8 ASN A 157 LYS A 175 1 19 HELIX 9 AA9 SER B 30 ASN B 54 1 25 HELIX 10 AB1 SER B 60 LEU B 84 1 25 HELIX 11 AB2 ALA B 97 LYS B 102 1 6 HELIX 12 AB3 ASP B 120 ASN B 145 1 26 HELIX 13 AB4 THR B 162 ASP B 172 1 11 HELIX 14 AB5 ASP B 177 THR B 187 1 11 HELIX 15 AB6 TYR B 195 GLU B 208 1 14 HELIX 16 AB7 PRO B 209 SER B 212 5 4 HELIX 17 AB8 SER B 216 LYS B 226 1 11 HELIX 18 AB9 ILE B 244 PHE B 259 1 16 HELIX 19 AC1 GLY B 266 LEU B 269 5 4 HELIX 20 AC2 SER B 270 LYS B 281 1 12 HELIX 21 AC3 PRO B 285 LYS B 311 1 27 HELIX 22 AC4 TYR B 319 ALA B 349 1 31 SHEET 1 AA1 6 ILE A 43 LEU A 52 0 SHEET 2 AA1 6 LYS A 55 THR A 64 -1 O ILE A 57 N ILE A 50 SHEET 3 AA1 6 TYR A 7 ILE A 14 1 N LEU A 11 O TRP A 62 SHEET 4 AA1 6 GLY A 83 ASP A 89 1 O MET A 85 N LEU A 12 SHEET 5 AA1 6 GLU A 115 ASN A 121 1 O MET A 117 N LEU A 86 SHEET 6 AA1 6 LYS A 146 GLU A 149 1 O LYS A 146 N ILE A 118 SHEET 1 AA2 4 ILE B 160 GLY B 161 0 SHEET 2 AA2 4 ALA B 113 ILE B 116 1 N VAL B 115 O GLY B 161 SHEET 3 AA2 4 GLU B 93 PHE B 96 -1 N GLU B 93 O ILE B 116 SHEET 4 AA2 4 LYS B 189 PRO B 190 -1 O LYS B 189 N PHE B 96 SHEET 1 AA3 2 VAL B 237 SER B 239 0 SHEET 2 AA3 2 GLU B 316 PRO B 318 -1 O MET B 317 N VAL B 238 LINK OH TYR A 77 P14 LJN A 204 1555 1555 1.48 LINK C56 LJN A 204 SG CYS B 197 1555 1555 1.62 LINK OG1 THR A 22 MG MG A 201 1555 1555 2.04 LINK OG1 THR A 40 MG MG A 201 1555 1555 2.06 LINK MG MG A 201 O2B GNP A 202 1555 1555 2.08 LINK MG MG A 201 O2G GNP A 202 1555 1555 2.12 LINK MG MG A 201 O HOH A 304 1555 1555 2.12 LINK MG MG A 201 O HOH A 312 1555 1555 2.07 CRYST1 142.309 142.309 76.616 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007027 0.004057 0.000000 0.00000 SCALE2 0.000000 0.008114 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013052 0.00000