HEADER MEMBRANE PROTEIN 30-APR-20 6YX9 TITLE CRYOGENIC HUMAN ADIPONECTIN RECEPTOR 2 (ADIPOR2) AT 2.4 A RESOLUTION TITLE 2 DETERMINED BY SERIAL CRYSTALLOGRAPHY (SSX) USING CRYSTALDIRECT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADIPONECTIN RECEPTOR PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROGESTIN AND ADIPOQ RECEPTOR FAMILY MEMBER 2,PROGESTIN AND COMPND 5 ADIPOQ RECEPTOR FAMILY MEMBER II; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: V REGION HEAVY CHAIN; COMPND 9 CHAIN: H; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: V REGION LIGHT CHAIN; COMPND 13 CHAIN: L; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ADIPOR2, PAQR2; SOURCE 6 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 7227; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7227 KEYWDS ADIPONECTIN RECEPTOR, ADIPOR2, SERIAL SYNCHROTRON CRYSTALLOGRAPHY, KEYWDS 2 SSX, CRYSTALDIRECT, LCP CRYSTALLIZATION, IN MESO, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.D.HEALEY,S.BASU,A.S.HUMM,C.LEYRAT,F.DUPEUX,A.PICA,S.GRANIER, AUTHOR 2 J.A.MARQUEZ REVDAT 3 24-JAN-24 6YX9 1 REMARK REVDAT 2 17-NOV-21 6YX9 1 JRNL REVDAT 1 12-MAY-21 6YX9 0 JRNL AUTH R.D.HEALEY,S.BASU,A.S.HUMM,C.LEYRAT,X.CONG,J.GOLEBIOWSKI, JRNL AUTH 2 F.DUPEUX,A.PICA,S.GRANIER,J.A.MARQUEZ JRNL TITL AN AUTOMATED PLATFORM FOR STRUCTURAL ANALYSIS OF MEMBRANE JRNL TITL 2 PROTEINS THROUGH SERIAL CRYSTALLOGRAPHY. JRNL REF CELL REP METHODS V. 1 NONE 2021 JRNL REFN ISSN 2667-2375 JRNL PMID 34723237 JRNL DOI 10.1016/J.CRMETH.2021.100102 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 (3-OCT-2019) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 32613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1632 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.07 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3801 REMARK 3 BIN FREE R VALUE : 0.4056 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 32 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4058 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 152 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.85970 REMARK 3 B22 (A**2) : 21.58770 REMARK 3 B33 (A**2) : -32.44740 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.540 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.261 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.214 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.263 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.216 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4330 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5834 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1471 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 704 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4330 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 532 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3521 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.49 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 21.23 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 15.4581 -5.3635 -27.8535 REMARK 3 T TENSOR REMARK 3 T11: -0.1494 T22: -0.2016 REMARK 3 T33: 0.0825 T12: 0.0095 REMARK 3 T13: -0.0426 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.2499 L22: 2.6283 REMARK 3 L33: 0.1763 L12: 0.2474 REMARK 3 L13: -0.1155 L23: -0.0593 REMARK 3 S TENSOR REMARK 3 S11: -0.0782 S12: -0.0514 S13: -0.0341 REMARK 3 S21: -0.0514 S22: 0.036 S23: -0.028 REMARK 3 S31: -0.0341 S32: -0.028 S33: 0.0422 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { H|* } REMARK 3 ORIGIN FOR THE GROUP (A): 23.4113 -54.173 -28.2026 REMARK 3 T TENSOR REMARK 3 T11: -0.1254 T22: -0.1963 REMARK 3 T33: 0.0728 T12: -0.0136 REMARK 3 T13: -0.0234 T23: -0.0212 REMARK 3 L TENSOR REMARK 3 L11: 2.7416 L22: 6.6762 REMARK 3 L33: 1.283 L12: -1.0989 REMARK 3 L13: -0.0047 L23: -0.0972 REMARK 3 S TENSOR REMARK 3 S11: -0.0056 S12: -0.2371 S13: 0.1597 REMARK 3 S21: -0.2371 S22: 0.0123 S23: 0.0241 REMARK 3 S31: 0.1597 S32: 0.0241 S33: -0.0067 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { L|* } REMARK 3 ORIGIN FOR THE GROUP (A): 29.5414 -42.8121 -10.4664 REMARK 3 T TENSOR REMARK 3 T11: -0.1378 T22: -0.181 REMARK 3 T33: 0.0795 T12: -0.0078 REMARK 3 T13: -0.0384 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 3.3641 L22: 2.9149 REMARK 3 L33: 3.1521 L12: 0.253 REMARK 3 L13: 0.5972 L23: -0.5163 REMARK 3 S TENSOR REMARK 3 S11: 0.0628 S12: 0.0364 S13: 0.1615 REMARK 3 S21: 0.0364 S22: -0.0565 S23: 0.0055 REMARK 3 S31: 0.1615 S32: 0.0055 S33: -0.0064 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YX9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292107689. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30556 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 37.12 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LWY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 42.3% PEG 400, 110 MM POTASSIUM REMARK 280 CITRATE, 100 MM HEPES PH 7.0. CRYSTALLISATION EXPERIMENTS WERE REMARK 280 CARRIED OUT AT THE HTX FACILITY OF EMBL-GRENOBLE. AUTOMATED REMARK 280 CRYSTAL HARVESTING UNDER CRYOGENIC CONDITION WAS DONE BY REMARK 280 CRYSTALDIRECT TECHNOLOGY, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.36000 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.84500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.36000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.84500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 GLU A 383 REMARK 465 ASP A 384 REMARK 465 ALA A 385 REMARK 465 LEU A 386 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 239 40.57 -107.13 REMARK 500 ILE A 308 22.96 -76.83 REMARK 500 SER H 85 63.27 32.60 REMARK 500 ALA H 103 49.26 -87.78 REMARK 500 ALA L 51 -47.71 70.47 REMARK 500 SER L 77 75.46 42.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 533 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH A 534 DISTANCE = 8.04 ANGSTROMS REMARK 525 HOH H 241 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH H 242 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH L 323 DISTANCE = 8.81 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 202 NE2 REMARK 620 2 HIS A 348 NE2 93.9 REMARK 620 3 HIS A 352 NE2 88.5 92.5 REMARK 620 4 OLA A 407 O1 157.5 88.0 113.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLB A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL L 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5LWY RELATED DB: PDB DBREF 6YX9 A 100 386 UNP Q86V24 PAQR2_HUMAN 100 386 DBREF 6YX9 H 1 121 PDB 6YX9 6YX9 1 121 DBREF 6YX9 L 0 107 PDB 6YX9 6YX9 0 107 SEQADV 6YX9 GLY A -4 UNP Q86V24 EXPRESSION TAG SEQADV 6YX9 GLY A -3 UNP Q86V24 EXPRESSION TAG SEQADV 6YX9 SER A -2 UNP Q86V24 EXPRESSION TAG SEQADV 6YX9 GLU A -1 UNP Q86V24 EXPRESSION TAG SEQADV 6YX9 PHE A 0 UNP Q86V24 EXPRESSION TAG SEQRES 1 A 292 GLY GLY SER GLU PHE GLU GLY ARG TRP ARG VAL ILE PRO SEQRES 2 A 292 HIS ASP VAL LEU PRO ASP TRP LEU LYS ASP ASN ASP PHE SEQRES 3 A 292 LEU LEU HIS GLY HIS ARG PRO PRO MET PRO SER PHE ARG SEQRES 4 A 292 ALA CYS PHE LYS SER ILE PHE ARG ILE HIS THR GLU THR SEQRES 5 A 292 GLY ASN ILE TRP THR HIS LEU LEU GLY CYS VAL PHE PHE SEQRES 6 A 292 LEU CYS LEU GLY ILE PHE TYR MET PHE ARG PRO ASN ILE SEQRES 7 A 292 SER PHE VAL ALA PRO LEU GLN GLU LYS VAL VAL PHE GLY SEQRES 8 A 292 LEU PHE PHE LEU GLY ALA ILE LEU CYS LEU SER PHE SER SEQRES 9 A 292 TRP LEU PHE HIS THR VAL TYR CYS HIS SER GLU GLY VAL SEQRES 10 A 292 SER ARG LEU PHE SER LYS LEU ASP TYR SER GLY ILE ALA SEQRES 11 A 292 LEU LEU ILE MET GLY SER PHE VAL PRO TRP LEU TYR TYR SEQRES 12 A 292 SER PHE TYR CYS ASN PRO GLN PRO CYS PHE ILE TYR LEU SEQRES 13 A 292 ILE VAL ILE CYS VAL LEU GLY ILE ALA ALA ILE ILE VAL SEQRES 14 A 292 SER GLN TRP ASP MET PHE ALA THR PRO GLN TYR ARG GLY SEQRES 15 A 292 VAL ARG ALA GLY VAL PHE LEU GLY LEU GLY LEU SER GLY SEQRES 16 A 292 ILE ILE PRO THR LEU HIS TYR VAL ILE SER GLU GLY PHE SEQRES 17 A 292 LEU LYS ALA ALA THR ILE GLY GLN ILE GLY TRP LEU MET SEQRES 18 A 292 LEU MET ALA SER LEU TYR ILE THR GLY ALA ALA LEU TYR SEQRES 19 A 292 ALA ALA ARG ILE PRO GLU ARG PHE PHE PRO GLY LYS CYS SEQRES 20 A 292 ASP ILE TRP PHE HIS SER HIS GLN LEU PHE HIS ILE PHE SEQRES 21 A 292 VAL VAL ALA GLY ALA PHE VAL HIS PHE HIS GLY VAL SER SEQRES 22 A 292 ASN LEU GLN GLU PHE ARG PHE MET ILE GLY GLY GLY CYS SEQRES 23 A 292 SER GLU GLU ASP ALA LEU SEQRES 1 H 121 GLU VAL LEU LEU GLN GLN SER GLY PRO GLU LEU VAL LYS SEQRES 2 H 121 PRO GLY ALA SER VAL ARG ILE THR CYS LYS ALA SER GLY SEQRES 3 H 121 TYR THR PHE THR ASP PHE ASN MET ASP TRP VAL LYS GLN SEQRES 4 H 121 SER PRO GLY LYS SER LEU GLU TRP ILE GLY ASP PHE ASN SEQRES 5 H 121 PRO ASN SER GLY GLY SER ILE TYR ASN GLN LYS PHE LYS SEQRES 6 H 121 ASP LYS ALA THR PHE THR VAL ASP LYS SER SER SER THR SEQRES 7 H 121 ALA TYR MET GLU LEU ARG SER LEU THR PHE GLU ASP THR SEQRES 8 H 121 ALA VAL TYR TYR CYS ALA ARG GLU THR GLY THR ALA TRP SEQRES 9 H 121 PHE ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 H 121 ALA ALA GLY GLY SEQRES 1 L 108 SER ASP ILE GLN MET THR GLN SER PRO ALA SER LEU SER SEQRES 2 L 108 ALA SER VAL GLY GLU THR VAL THR ILE THR CYS ARG ALA SEQRES 3 L 108 SER GLY ASN ILE HIS ASN PHE LEU ALA TRP TYR GLN GLN SEQRES 4 L 108 LYS GLN GLY LYS SER PRO GLN VAL LEU VAL TYR ASN ALA SEQRES 5 L 108 LYS THR LEU ALA ASP GLY VAL PRO SER ARG PHE SER GLY SEQRES 6 L 108 SER GLY SER GLY THR GLN TYR SER LEU LYS ILE ASN SER SEQRES 7 L 108 LEU GLN PRO GLU ASP PHE GLY SER TYR TYR CYS GLN GLN SEQRES 8 L 108 PHE TRP SER THR PRO TYR THR PHE GLY GLY GLY THR LYS SEQRES 9 L 108 LEU GLU ILE ASN HET ZN A 401 1 HET OLB A 402 25 HET OLB A 403 25 HET OLB A 404 25 HET OLB A 405 25 HET OLB A 406 25 HET OLA A 407 20 HET GOL L 201 6 HETNAM ZN ZINC ION HETNAM OLB (2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM OLA OLEIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 ZN ZN 2+ FORMUL 5 OLB 5(C21 H40 O4) FORMUL 10 OLA C18 H34 O2 FORMUL 11 GOL C3 H8 O3 FORMUL 12 HOH *99(H2 O) HELIX 1 AA1 PRO A 107 LEU A 111 5 5 HELIX 2 AA2 PRO A 112 LYS A 116 5 5 HELIX 3 AA3 SER A 131 SER A 138 1 8 HELIX 4 AA4 ILE A 139 ARG A 141 5 3 HELIX 5 AA5 GLU A 145 PHE A 168 1 24 HELIX 6 AA6 PRO A 170 PHE A 174 5 5 HELIX 7 AA7 ALA A 176 TYR A 205 1 30 HELIX 8 AA8 SER A 208 PHE A 239 1 32 HELIX 9 AA9 ASN A 242 SER A 264 1 23 HELIX 10 AB1 GLN A 265 GLN A 273 5 9 HELIX 11 AB2 TYR A 274 SER A 288 1 15 HELIX 12 AB3 GLY A 289 GLY A 301 1 13 HELIX 13 AB4 GLY A 301 ILE A 308 1 8 HELIX 14 AB5 GLY A 309 ARG A 331 1 23 HELIX 15 AB6 HIS A 346 GLY A 377 1 32 HELIX 16 AB7 THR H 28 PHE H 32 5 5 HELIX 17 AB8 GLN H 62 LYS H 65 5 4 HELIX 18 AB9 LYS H 74 SER H 76 5 3 HELIX 19 AC1 THR H 87 THR H 91 5 5 HELIX 20 AC2 GLN L 79 PHE L 83 5 5 SHEET 1 AA1 4 LEU H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 AA1 4 THR H 78 LEU H 83 -1 O MET H 81 N ILE H 20 SHEET 4 AA1 4 ALA H 68 ASP H 73 -1 N THR H 69 O GLU H 82 SHEET 1 AA2 6 GLU H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 112 VAL H 116 1 O THR H 115 N GLU H 10 SHEET 3 AA2 6 ALA H 92 ARG H 98 -1 N ALA H 92 O VAL H 114 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N ASP H 35 O ALA H 97 SHEET 5 AA2 6 LEU H 45 PHE H 51 -1 O GLU H 46 N LYS H 38 SHEET 6 AA2 6 SER H 58 TYR H 60 -1 O ILE H 59 N ASP H 50 SHEET 1 AA3 4 GLU H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 112 VAL H 116 1 O THR H 115 N GLU H 10 SHEET 3 AA3 4 ALA H 92 ARG H 98 -1 N ALA H 92 O VAL H 114 SHEET 4 AA3 4 TYR H 107 TRP H 108 -1 O TYR H 107 N ARG H 98 SHEET 1 AA4 4 MET L 4 SER L 7 0 SHEET 2 AA4 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 AA4 4 GLN L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA4 4 PHE L 62 SER L 67 -1 N SER L 65 O SER L 72 SHEET 1 AA5 6 SER L 10 SER L 14 0 SHEET 2 AA5 6 THR L 102 ASN L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AA5 6 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 AA5 6 LEU L 33 GLN L 38 -1 N GLN L 38 O SER L 85 SHEET 5 AA5 6 GLN L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA5 6 THR L 53 LEU L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AA6 4 SER L 10 SER L 14 0 SHEET 2 AA6 4 THR L 102 ASN L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AA6 4 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 AA6 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.71 LINK NE2 HIS A 202 ZN ZN A 401 1555 1555 2.29 LINK NE2 HIS A 348 ZN ZN A 401 1555 1555 2.13 LINK NE2 HIS A 352 ZN ZN A 401 1555 1555 2.16 LINK ZN ZN A 401 O1 OLA A 407 1555 1555 2.57 CISPEP 1 ILE A 332 PRO A 333 0 16.42 CISPEP 2 SER L 7 PRO L 8 0 -6.05 CISPEP 3 THR L 94 PRO L 95 0 4.99 SITE 1 AC1 4 HIS A 202 HIS A 348 HIS A 352 OLA A 407 SITE 1 AC2 14 SER A 131 PHE A 132 ARG A 133 PHE A 136 SITE 2 AC2 14 LEU A 200 VAL A 297 ILE A 298 PHE A 302 SITE 3 AC2 14 LEU A 303 HOH A 501 ASN L 28 HIS L 30 SITE 4 AC2 14 ASN L 31 GLY L 68 SITE 1 AC3 6 LEU A 154 PHE A 158 CYS A 161 PHE A 165 SITE 2 AC3 6 PHE A 168 ARG A 169 SITE 1 AC4 6 LEU A 214 LYS A 217 LEU A 218 SER A 221 SITE 2 AC4 6 LEU A 225 GLN A 265 SITE 1 AC5 12 MET A 167 PHE A 168 ARG A 169 ASN A 171 SITE 2 AC5 12 PRO A 272 GLN A 273 ARG A 275 ILE A 322 SITE 3 AC5 12 ALA A 329 ARG A 331 ARG A 335 HOH A 506 SITE 1 AC6 10 SER A 230 GLY A 286 ILE A 290 PHE A 302 SITE 2 AC6 10 ILE A 311 LEU A 314 MET A 317 TYR A 321 SITE 3 AC6 10 HIS A 362 OLA A 407 SITE 1 AC7 13 ASP A 219 ILE A 223 PHE A 282 LEU A 320 SITE 2 AC7 13 TYR A 321 TYR A 328 HIS A 348 PHE A 351 SITE 3 AC7 13 PHE A 354 GLY A 358 ZN A 401 OLB A 406 SITE 4 AC7 13 HOH A 502 SITE 1 AC8 4 GLN L 37 GLN L 45 PHE L 62 ASP L 82 CRYST1 74.720 100.580 109.690 90.00 90.00 90.00 P 21 2 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013383 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009942 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009117 0.00000