HEADER TRANSFERASE 03-MAY-20 6YXT TITLE CRYSTAL STRUCTURE OF THE ADP-BOUND FORM OF CHOLINE KINASE FROM TITLE 2 PLASMODIUM FALCIPARUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLINE KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.1.32; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM (ISOLATE 3D7); SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 GENE: PF3D7_1401800; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR KEYWDS CHOLINE KINASE, ADP, COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.TORRETTA,E.PARISINI REVDAT 2 24-JAN-24 6YXT 1 REMARK REVDAT 1 05-AUG-20 6YXT 0 JRNL AUTH A.TORRETTA,L.C.LOPEZ-CARA,E.PARISINI JRNL TITL CRYSTAL STRUCTURE OF THE APO AND THE ADP-BOUND FORM OF JRNL TITL 2 CHOLINE KINASE FROM PLASMODIUM FALCIPARUM JRNL REF CRYSTALS 2020 JRNL REFN ESSN 2073-4352 JRNL DOI 10.3390/CRYST10070613 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 24706 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1230 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.1700 - 4.5800 1.00 2800 122 0.1895 0.1979 REMARK 3 2 4.5800 - 3.6300 1.00 2643 151 0.1817 0.2215 REMARK 3 3 3.6300 - 3.1700 1.00 2598 156 0.2175 0.2209 REMARK 3 4 3.1700 - 2.8800 1.00 2586 163 0.2507 0.2949 REMARK 3 5 2.8800 - 2.6800 1.00 2611 132 0.2550 0.3230 REMARK 3 6 2.6800 - 2.5200 1.00 2589 129 0.2916 0.3417 REMARK 3 7 2.5200 - 2.3900 1.00 2580 129 0.3214 0.3582 REMARK 3 8 2.3900 - 2.2900 1.00 2576 120 0.3562 0.3395 REMARK 3 9 2.2900 - 2.2000 0.96 2493 128 0.4604 0.4992 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YXT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108474. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24873 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 68.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3FI8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% (V/V) PEG 4000, 0.2 M NACL, 0.1 M REMARK 280 HEPES PH 7.5, 2 MM TCEP, 4 MM MGCL2 AND 2 MM ADP, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.22500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.55500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.55500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.22500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 59 REMARK 465 GLY A 60 REMARK 465 SER A 61 REMARK 465 SER A 62 REMARK 465 HIS A 63 REMARK 465 HIS A 64 REMARK 465 HIS A 65 REMARK 465 HIS A 66 REMARK 465 HIS A 67 REMARK 465 HIS A 68 REMARK 465 SER A 69 REMARK 465 SER A 70 REMARK 465 GLY A 71 REMARK 465 GLU A 72 REMARK 465 ASN A 73 REMARK 465 LEU A 74 REMARK 465 TYR A 75 REMARK 465 PHE A 76 REMARK 465 GLN A 77 REMARK 465 GLY A 78 REMARK 465 SER A 79 REMARK 465 LYS A 80 REMARK 465 LEU A 81 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 113 -139.22 -158.23 REMARK 500 LYS A 146 -160.36 60.25 REMARK 500 ASP A 147 -43.86 -149.59 REMARK 500 ALA A 150 42.76 -93.83 REMARK 500 LEU A 151 58.28 -58.93 REMARK 500 TYR A 152 -62.12 -132.04 REMARK 500 PRO A 154 -126.65 -104.67 REMARK 500 ASN A 247 86.97 31.48 REMARK 500 LEU A 253 -70.21 41.62 REMARK 500 ASP A 254 91.09 -69.08 REMARK 500 GLU A 276 89.39 -63.78 REMARK 500 ASP A 288 52.34 -149.82 REMARK 500 ASN A 298 -29.99 65.30 REMARK 500 CYS A 300 -175.15 -173.05 REMARK 500 ASP A 305 76.23 59.94 REMARK 500 ASP A 363 -73.69 57.55 REMARK 500 ASP A 364 -94.71 -70.35 REMARK 500 ALA A 368 26.33 -76.23 REMARK 500 SER A 369 29.44 -79.53 REMARK 500 LYS A 404 -55.78 -14.80 REMARK 500 GLU A 408 -64.99 -143.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 293 OD1 REMARK 620 2 ASP A 305 OD2 93.4 REMARK 620 3 ADP A 503 O2A 87.3 90.5 REMARK 620 4 ADP A 503 O3B 159.2 75.7 75.3 REMARK 620 5 HOH A 614 O 86.3 160.7 70.2 98.2 REMARK 620 6 HOH A 642 O 103.4 111.4 154.7 97.2 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 305 OD1 REMARK 620 2 ASP A 305 OD2 59.1 REMARK 620 3 GLU A 307 OE2 86.2 143.4 REMARK 620 4 ADP A 503 O2B 108.8 112.3 88.4 REMARK 620 5 ADP A 503 O3B 106.5 64.3 145.2 56.9 REMARK 620 6 HOH A 613 O 80.9 75.1 89.0 169.8 124.5 REMARK 620 7 HOH A 677 O 149.8 101.7 103.9 99.9 81.5 71.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6YXS RELATED DB: PDB REMARK 900 6YXS CONTAINS THE SAME PROTEIN BUT IN THE APO FORM, I.E. WITH NO REMARK 900 ADP BOUND TO IT DBREF 6YXT A 79 440 UNP Q8IM71 Q8IM71_PLAF7 79 440 SEQADV 6YXT MET A 59 UNP Q8IM71 INITIATING METHIONINE SEQADV 6YXT GLY A 60 UNP Q8IM71 EXPRESSION TAG SEQADV 6YXT SER A 61 UNP Q8IM71 EXPRESSION TAG SEQADV 6YXT SER A 62 UNP Q8IM71 EXPRESSION TAG SEQADV 6YXT HIS A 63 UNP Q8IM71 EXPRESSION TAG SEQADV 6YXT HIS A 64 UNP Q8IM71 EXPRESSION TAG SEQADV 6YXT HIS A 65 UNP Q8IM71 EXPRESSION TAG SEQADV 6YXT HIS A 66 UNP Q8IM71 EXPRESSION TAG SEQADV 6YXT HIS A 67 UNP Q8IM71 EXPRESSION TAG SEQADV 6YXT HIS A 68 UNP Q8IM71 EXPRESSION TAG SEQADV 6YXT SER A 69 UNP Q8IM71 EXPRESSION TAG SEQADV 6YXT SER A 70 UNP Q8IM71 EXPRESSION TAG SEQADV 6YXT GLY A 71 UNP Q8IM71 EXPRESSION TAG SEQADV 6YXT GLU A 72 UNP Q8IM71 EXPRESSION TAG SEQADV 6YXT ASN A 73 UNP Q8IM71 EXPRESSION TAG SEQADV 6YXT LEU A 74 UNP Q8IM71 EXPRESSION TAG SEQADV 6YXT TYR A 75 UNP Q8IM71 EXPRESSION TAG SEQADV 6YXT PHE A 76 UNP Q8IM71 EXPRESSION TAG SEQADV 6YXT GLN A 77 UNP Q8IM71 EXPRESSION TAG SEQADV 6YXT GLY A 78 UNP Q8IM71 EXPRESSION TAG SEQRES 1 A 382 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 382 GLU ASN LEU TYR PHE GLN GLY SER LYS LEU THR ASP PRO SEQRES 3 A 382 LEU TYR ILE LYS LYS ILE CYS LEU GLU LYS VAL HIS ASP SEQRES 4 A 382 TRP SER ARG CYS ASN GLU ASP ASP VAL CYS VAL ASN GLN SEQRES 5 A 382 ILE LEU SER GLY LEU THR ASN GLN LEU PHE GLU VAL SER SEQRES 6 A 382 ILE LYS GLU ASP THR ALA ILE GLU TYR ARG ILE THR ARG SEQRES 7 A 382 ARG HIS VAL LEU PHE ARG ILE TYR GLY LYS ASP VAL ASP SEQRES 8 A 382 ALA LEU TYR ASN PRO LEU SER GLU PHE GLU VAL TYR LYS SEQRES 9 A 382 THR MET SER LYS TYR ARG ILE ALA PRO LEU LEU LEU ASN SEQRES 10 A 382 THR PHE ASP GLY GLY ARG ILE GLU GLU TRP LEU TYR GLY SEQRES 11 A 382 ASP PRO LEU SER ILE ASP ASP LEU LYS ASN LYS SER ILE SEQRES 12 A 382 LEU VAL GLY ILE ALA ASN VAL LEU GLY LYS PHE HIS THR SEQRES 13 A 382 LEU SER ARG LYS ARG HIS LEU PRO GLU HIS TRP ASP LYS SEQRES 14 A 382 THR PRO CYS VAL PHE LYS MET MET ASP ARG TRP ARG LEU SEQRES 15 A 382 ALA VAL SER ASN TYR LYS ASN LEU ASP LYS VAL THR LEU SEQRES 16 A 382 ASP ILE ASN LYS TYR ILE GLN GLU SER HIS LYS PHE LEU SEQRES 17 A 382 LYS PHE ILE LYS ILE TYR THR GLN ILE GLU ASN ILE ALA SEQRES 18 A 382 ASN ASP ILE VAL PHE CYS HIS ASN ASP LEU GLN GLU ASN SEQRES 19 A 382 ASN ILE MET ASN THR ASN LYS CYS LEU ARG LEU ILE ASP SEQRES 20 A 382 PHE GLU TYR SER GLY TYR ASN PHE LEU SER ALA ASP ILE SEQRES 21 A 382 ALA ASN PHE PHE ILE GLU THR THR ILE ASP TYR SER TYR SEQRES 22 A 382 ASN ALA TYR PRO PHE PHE ILE ILE ASN LYS LYS ASN TYR SEQRES 23 A 382 ILE SER TYR GLU SER ARG ILE LEU PHE VAL THR THR TYR SEQRES 24 A 382 LEU SER LYS TYR LEU ASP ASP SER THR ALA ALA SER ASP SEQRES 25 A 382 GLN ASP ILE ILE ASP GLN PHE LEU GLU ALA ILE GLU VAL SEQRES 26 A 382 GLN ALA LEU GLY LEU HIS LEU ILE TRP ALA PHE TRP SER SEQRES 27 A 382 ILE ILE ARG GLY TYR GLN THR LYS SER TYR ASN GLU PHE SEQRES 28 A 382 ASP PHE PHE LEU TYR ALA LYS GLU ARG LEU LYS MET TYR SEQRES 29 A 382 ASP GLU GLN LYS GLN TYR LEU MET SER LYS ASN ILE ILE SEQRES 30 A 382 LYS ASP TYR ASP ASP HET MG A 501 1 HET MG A 502 1 HET ADP A 503 27 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MG 2(MG 2+) FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 EDO 3(C2 H6 O2) FORMUL 8 HOH *96(H2 O) HELIX 1 AA1 ASP A 83 VAL A 95 1 13 HELIX 2 AA2 ASP A 97 CYS A 101 5 5 HELIX 3 AA3 ASN A 102 ASP A 104 5 3 HELIX 4 AA4 LYS A 125 TYR A 132 1 8 HELIX 5 AA5 LEU A 155 TYR A 167 1 13 HELIX 6 AA6 ASP A 194 LYS A 197 5 4 HELIX 7 AA7 ASN A 198 THR A 214 1 17 HELIX 8 AA8 THR A 214 ARG A 219 1 6 HELIX 9 AA9 PRO A 229 ASN A 244 1 16 HELIX 10 AB1 ASP A 254 THR A 273 1 20 HELIX 11 AB2 ASN A 277 ASN A 280 5 4 HELIX 12 AB3 GLN A 290 ASN A 292 5 3 HELIX 13 AB4 LEU A 314 THR A 325 1 12 HELIX 14 AB5 LYS A 341 TYR A 344 5 4 HELIX 15 AB6 SER A 346 LEU A 362 1 17 HELIX 16 AB7 ASP A 370 THR A 403 1 34 HELIX 17 AB8 ASP A 410 LYS A 432 1 23 SHEET 1 AA1 5 VAL A 106 GLN A 110 0 SHEET 2 AA1 5 ASN A 117 ILE A 124 -1 O GLU A 121 N ASN A 109 SHEET 3 AA1 5 HIS A 138 TYR A 144 -1 O PHE A 141 N PHE A 120 SHEET 4 AA1 5 GLY A 180 GLU A 184 -1 O GLU A 183 N LEU A 140 SHEET 5 AA1 5 LEU A 173 PHE A 177 -1 N ASN A 175 O ILE A 182 SHEET 1 AA2 3 ASP A 189 PRO A 190 0 SHEET 2 AA2 3 ILE A 294 ASN A 296 -1 O ASN A 296 N ASP A 189 SHEET 3 AA2 3 LEU A 301 LEU A 303 -1 O ARG A 302 N MET A 295 SHEET 1 AA3 2 ILE A 282 CYS A 285 0 SHEET 2 AA3 2 GLY A 310 PHE A 313 -1 O GLY A 310 N CYS A 285 SHEET 1 AA4 2 ILE A 327 ASP A 328 0 SHEET 2 AA4 2 ILE A 338 ILE A 339 -1 O ILE A 338 N ASP A 328 LINK OD1 ASN A 293 MG MG A 502 1555 1555 2.02 LINK OD1 ASP A 305 MG MG A 501 1555 1555 2.37 LINK OD2 ASP A 305 MG MG A 501 1555 1555 2.04 LINK OD2 ASP A 305 MG MG A 502 1555 1555 2.44 LINK OE2 GLU A 307 MG MG A 501 1555 1555 1.98 LINK MG MG A 501 O2B ADP A 503 1555 1555 2.19 LINK MG MG A 501 O3B ADP A 503 1555 1555 2.93 LINK MG MG A 501 O HOH A 613 1555 1555 2.18 LINK MG MG A 501 O HOH A 677 1555 1555 2.14 LINK MG MG A 502 O2A ADP A 503 1555 1555 2.19 LINK MG MG A 502 O3B ADP A 503 1555 1555 2.00 LINK MG MG A 502 O HOH A 614 1555 1555 2.10 LINK MG MG A 502 O HOH A 642 1555 1555 2.10 CISPEP 1 TYR A 334 PRO A 335 0 0.34 SITE 1 AC1 5 ASP A 305 GLU A 307 ADP A 503 HOH A 613 SITE 2 AC1 5 HOH A 677 SITE 1 AC2 5 ASN A 293 ASP A 305 ADP A 503 HOH A 614 SITE 2 AC2 5 HOH A 642 SITE 1 AC3 19 SER A 113 GLY A 114 ASN A 117 LEU A 119 SITE 2 AC3 19 ARG A 142 GLU A 184 TRP A 185 LEU A 186 SITE 3 AC3 19 ASN A 292 ASN A 293 ASP A 305 GLU A 307 SITE 4 AC3 19 MG A 501 MG A 502 HOH A 605 HOH A 614 SITE 5 AC3 19 HOH A 642 HOH A 656 HOH A 658 SITE 1 AC4 7 ASP A 288 GLN A 290 ASN A 320 GLU A 324 SITE 2 AC4 7 TRP A 392 ARG A 418 HOH A 623 SITE 1 AC5 5 ILE A 169 VAL A 208 ARG A 302 LEU A 303 SITE 2 AC5 5 HOH A 611 SITE 1 AC6 3 GLU A 382 GLN A 425 HOH A 645 CRYST1 66.450 68.000 105.110 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015049 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009514 0.00000