HEADER PHOTOSYNTHESIS 05-MAY-20 6YYJ TITLE CRYSTAL STRUCTURE OF NATIVE PHYCOCYANIN FROM T. ELONGATUS IN TITLE 2 SPACEGROUP P21212 AT 2.1 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-PHYCOCYANIN ALPHA CHAIN; COMPND 3 CHAIN: A, C, E; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: C-PHYCOCYANIN BETA CHAIN; COMPND 6 CHAIN: B, D, F SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 146786; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS; SOURCE 6 ORGANISM_TAXID: 146786 KEYWDS PHYTOCYANIN, ANTENNA PROTEIN, PHOTOSYNTHESIS, CHROMOPHORE, LIGHT- KEYWDS 2 HARVESTING EXPDTA X-RAY DIFFRACTION AUTHOR C.G.FEILER,S.FALKE,I.SARROU REVDAT 3 24-JAN-24 6YYJ 1 REMARK REVDAT 2 17-FEB-21 6YYJ 1 JRNL REVDAT 1 20-JAN-21 6YYJ 0 JRNL AUTH I.SARROU,C.G.FEILER,S.FALKE,N.PEARD,O.YEFANOV,H.CHAPMAN JRNL TITL C-PHYCOCYANIN AS A HIGHLY ATTRACTIVE MODEL SYSTEM IN PROTEIN JRNL TITL 2 CRYSTALLOGRAPHY: UNIQUE CRYSTALLIZATION PROPERTIES AND JRNL TITL 3 PACKING-DIVERSITY SCREENING. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 77 224 2021 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 33559611 JRNL DOI 10.1107/S2059798320016071 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 65988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.180 REMARK 3 FREE R VALUE TEST SET COUNT : 2100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8400 - 5.3200 1.00 4532 150 0.1834 0.2332 REMARK 3 2 5.3200 - 4.2200 1.00 4366 143 0.1622 0.1872 REMARK 3 3 4.2200 - 3.6900 1.00 4323 142 0.1593 0.2184 REMARK 3 4 3.6900 - 3.3500 1.00 4300 141 0.1825 0.2421 REMARK 3 5 3.3500 - 3.1100 1.00 4280 141 0.2158 0.2609 REMARK 3 6 3.1100 - 2.9300 1.00 4253 139 0.2198 0.2777 REMARK 3 7 2.9300 - 2.7800 1.00 4276 141 0.2202 0.2949 REMARK 3 8 2.7800 - 2.6600 1.00 4233 139 0.2273 0.3085 REMARK 3 9 2.6600 - 2.5600 1.00 4230 139 0.2400 0.3491 REMARK 3 10 2.5600 - 2.4700 1.00 4248 139 0.2400 0.2925 REMARK 3 11 2.4700 - 2.3900 1.00 4223 139 0.2517 0.3047 REMARK 3 12 2.3900 - 2.3200 1.00 4235 139 0.2706 0.3127 REMARK 3 13 2.3200 - 2.2600 1.00 4235 139 0.2923 0.3763 REMARK 3 14 2.2600 - 2.2100 1.00 4211 139 0.3167 0.3954 REMARK 3 15 2.2100 - 2.1600 0.93 3943 130 0.3376 0.3885 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.346 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.444 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 8126 REMARK 3 ANGLE : 1.541 11048 REMARK 3 CHIRALITY : 0.050 1209 REMARK 3 PLANARITY : 0.007 1420 REMARK 3 DIHEDRAL : 20.627 1405 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6YYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292107483. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66066 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 47.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.23000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.87300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6YPQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1,2% CHOLIC ACID DERIVATIVES MIX, 0.1M REMARK 280 BUFFER SYSTEM1, 50% PRECIPITANT MIX1, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 59.18150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.11550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 59.18150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.11550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 324 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 77 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 77 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR F 149 HC PXQ F 501 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 76 C SER A 76 O -0.144 REMARK 500 LYS D 32 CE LYS D 32 NZ -0.204 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 30 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 SER A 76 O - C - N ANGL. DEV. = -12.8 DEGREES REMARK 500 THR A 77 C - N - CA ANGL. DEV. = -19.5 DEGREES REMARK 500 LYS D 32 CG - CD - CE ANGL. DEV. = -27.4 DEGREES REMARK 500 LYS D 32 CD - CE - NZ ANGL. DEV. = -37.8 DEGREES REMARK 500 MET E 38 CG - SD - CE ANGL. DEV. = 11.7 DEGREES REMARK 500 MET F 134 CG - SD - CE ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 18 153.94 -49.21 REMARK 500 SER A 76 -1.48 -56.97 REMARK 500 THR B 75 151.36 74.22 REMARK 500 CYS B 109 -49.17 -136.57 REMARK 500 THR C 68 -36.33 -130.24 REMARK 500 ALA C 75 42.72 -89.16 REMARK 500 LEU C 111 -46.89 -136.60 REMARK 500 THR D 75 140.74 79.66 REMARK 500 ALA E 75 36.86 -82.52 REMARK 500 LEU E 111 -41.10 -134.29 REMARK 500 THR F 75 154.75 79.33 REMARK 500 CYS F 109 -50.38 -126.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PXQ A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PXQ B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PXQ B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES D 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE E 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE E 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES E 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PXQ C 201 and CYS C REMARK 800 84 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PXQ D 201 and CYS D REMARK 800 82 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PXQ D 202 and CYS D REMARK 800 153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PXQ E 201 and CYS E REMARK 800 84 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PXQ F 500 and CYS F REMARK 800 82 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PXQ F 501 and CYS F REMARK 800 153 DBREF 6YYJ A 1 162 UNP P50032 PHCA_THEEB 1 162 DBREF 6YYJ B 1 172 UNP P50033 PHCB_THEEB 1 172 DBREF 6YYJ C 1 162 UNP P50032 PHCA_THEEB 1 162 DBREF 6YYJ D 1 172 UNP P50033 PHCB_THEEB 1 172 DBREF 6YYJ E 1 162 UNP P50032 PHCA_THEEB 1 162 DBREF 6YYJ F 1 172 UNP P50033 PHCB_THEEB 1 172 SEQRES 1 A 162 MET LYS THR PRO ILE THR GLU ALA ILE ALA ALA ALA ASP SEQRES 2 A 162 THR GLN GLY ARG PHE LEU SER ASN THR GLU LEU GLN ALA SEQRES 3 A 162 VAL ASP GLY ARG PHE LYS ARG ALA VAL ALA SER MET GLU SEQRES 4 A 162 ALA ALA ARG ALA LEU THR ASN ASN ALA GLN SER LEU ILE SEQRES 5 A 162 ASP GLY ALA ALA GLN ALA VAL TYR GLN LYS PHE PRO TYR SEQRES 6 A 162 THR THR THR MET GLN GLY SER GLN TYR ALA SER THR PRO SEQRES 7 A 162 GLU GLY LYS ALA LYS CYS ALA ARG ASP ILE GLY TYR TYR SEQRES 8 A 162 LEU ARG MET VAL THR TYR CYS LEU VAL ALA GLY GLY THR SEQRES 9 A 162 GLY PRO MET ASP GLU TYR LEU ILE ALA GLY LEU SER GLU SEQRES 10 A 162 ILE ASN SER THR PHE ASP LEU SER PRO SER TRP TYR ILE SEQRES 11 A 162 GLU ALA LEU LYS TYR ILE LYS ALA ASN HIS GLY LEU THR SEQRES 12 A 162 GLY GLN ALA ALA VAL GLU ALA ASN ALA TYR ILE ASP TYR SEQRES 13 A 162 ALA ILE ASN ALA LEU SER SEQRES 1 B 172 MET LEU ASP ALA PHE ALA LYS VAL VAL ALA GLN ALA ASP SEQRES 2 B 172 ALA ARG GLY GLU PHE LEU THR ASN ALA GLN PHE ASP ALA SEQRES 3 B 172 LEU SER ASN LEU VAL LYS GLU GLY ASN LYS ARG LEU ASP SEQRES 4 B 172 ALA VAL ASN ARG ILE THR SER ASN ALA SER THR ILE VAL SEQRES 5 B 172 ALA ASN ALA ALA ARG ALA LEU PHE ALA GLU GLN PRO GLN SEQRES 6 B 172 LEU ILE GLN PRO GLY GLY MEN ALA TYR THR ASN ARG ARG SEQRES 7 B 172 MET ALA ALA CYS LEU ARG ASP MET GLU ILE ILE LEU ARG SEQRES 8 B 172 TYR VAL THR TYR ALA ILE LEU ALA GLY ASP SER SER VAL SEQRES 9 B 172 LEU ASP ASP ARG CYS LEU ASN GLY LEU ARG GLU THR TYR SEQRES 10 B 172 GLN ALA LEU GLY THR PRO GLY SER SER VAL ALA VAL ALA SEQRES 11 B 172 ILE GLN LYS MET LYS ASP ALA ALA ILE ALA ILE ALA ASN SEQRES 12 B 172 ASP PRO ASN GLY ILE THR PRO GLY ASP CYS SER ALA LEU SEQRES 13 B 172 MET SER GLU ILE ALA GLY TYR PHE ASP ARG ALA ALA ALA SEQRES 14 B 172 ALA VAL ALA SEQRES 1 C 162 MET LYS THR PRO ILE THR GLU ALA ILE ALA ALA ALA ASP SEQRES 2 C 162 THR GLN GLY ARG PHE LEU SER ASN THR GLU LEU GLN ALA SEQRES 3 C 162 VAL ASP GLY ARG PHE LYS ARG ALA VAL ALA SER MET GLU SEQRES 4 C 162 ALA ALA ARG ALA LEU THR ASN ASN ALA GLN SER LEU ILE SEQRES 5 C 162 ASP GLY ALA ALA GLN ALA VAL TYR GLN LYS PHE PRO TYR SEQRES 6 C 162 THR THR THR MET GLN GLY SER GLN TYR ALA SER THR PRO SEQRES 7 C 162 GLU GLY LYS ALA LYS CYS ALA ARG ASP ILE GLY TYR TYR SEQRES 8 C 162 LEU ARG MET VAL THR TYR CYS LEU VAL ALA GLY GLY THR SEQRES 9 C 162 GLY PRO MET ASP GLU TYR LEU ILE ALA GLY LEU SER GLU SEQRES 10 C 162 ILE ASN SER THR PHE ASP LEU SER PRO SER TRP TYR ILE SEQRES 11 C 162 GLU ALA LEU LYS TYR ILE LYS ALA ASN HIS GLY LEU THR SEQRES 12 C 162 GLY GLN ALA ALA VAL GLU ALA ASN ALA TYR ILE ASP TYR SEQRES 13 C 162 ALA ILE ASN ALA LEU SER SEQRES 1 D 172 MET LEU ASP ALA PHE ALA LYS VAL VAL ALA GLN ALA ASP SEQRES 2 D 172 ALA ARG GLY GLU PHE LEU THR ASN ALA GLN PHE ASP ALA SEQRES 3 D 172 LEU SER ASN LEU VAL LYS GLU GLY ASN LYS ARG LEU ASP SEQRES 4 D 172 ALA VAL ASN ARG ILE THR SER ASN ALA SER THR ILE VAL SEQRES 5 D 172 ALA ASN ALA ALA ARG ALA LEU PHE ALA GLU GLN PRO GLN SEQRES 6 D 172 LEU ILE GLN PRO GLY GLY MEN ALA TYR THR ASN ARG ARG SEQRES 7 D 172 MET ALA ALA CYS LEU ARG ASP MET GLU ILE ILE LEU ARG SEQRES 8 D 172 TYR VAL THR TYR ALA ILE LEU ALA GLY ASP SER SER VAL SEQRES 9 D 172 LEU ASP ASP ARG CYS LEU ASN GLY LEU ARG GLU THR TYR SEQRES 10 D 172 GLN ALA LEU GLY THR PRO GLY SER SER VAL ALA VAL ALA SEQRES 11 D 172 ILE GLN LYS MET LYS ASP ALA ALA ILE ALA ILE ALA ASN SEQRES 12 D 172 ASP PRO ASN GLY ILE THR PRO GLY ASP CYS SER ALA LEU SEQRES 13 D 172 MET SER GLU ILE ALA GLY TYR PHE ASP ARG ALA ALA ALA SEQRES 14 D 172 ALA VAL ALA SEQRES 1 E 162 MET LYS THR PRO ILE THR GLU ALA ILE ALA ALA ALA ASP SEQRES 2 E 162 THR GLN GLY ARG PHE LEU SER ASN THR GLU LEU GLN ALA SEQRES 3 E 162 VAL ASP GLY ARG PHE LYS ARG ALA VAL ALA SER MET GLU SEQRES 4 E 162 ALA ALA ARG ALA LEU THR ASN ASN ALA GLN SER LEU ILE SEQRES 5 E 162 ASP GLY ALA ALA GLN ALA VAL TYR GLN LYS PHE PRO TYR SEQRES 6 E 162 THR THR THR MET GLN GLY SER GLN TYR ALA SER THR PRO SEQRES 7 E 162 GLU GLY LYS ALA LYS CYS ALA ARG ASP ILE GLY TYR TYR SEQRES 8 E 162 LEU ARG MET VAL THR TYR CYS LEU VAL ALA GLY GLY THR SEQRES 9 E 162 GLY PRO MET ASP GLU TYR LEU ILE ALA GLY LEU SER GLU SEQRES 10 E 162 ILE ASN SER THR PHE ASP LEU SER PRO SER TRP TYR ILE SEQRES 11 E 162 GLU ALA LEU LYS TYR ILE LYS ALA ASN HIS GLY LEU THR SEQRES 12 E 162 GLY GLN ALA ALA VAL GLU ALA ASN ALA TYR ILE ASP TYR SEQRES 13 E 162 ALA ILE ASN ALA LEU SER SEQRES 1 F 172 MET LEU ASP ALA PHE ALA LYS VAL VAL ALA GLN ALA ASP SEQRES 2 F 172 ALA ARG GLY GLU PHE LEU THR ASN ALA GLN PHE ASP ALA SEQRES 3 F 172 LEU SER ASN LEU VAL LYS GLU GLY ASN LYS ARG LEU ASP SEQRES 4 F 172 ALA VAL ASN ARG ILE THR SER ASN ALA SER THR ILE VAL SEQRES 5 F 172 ALA ASN ALA ALA ARG ALA LEU PHE ALA GLU GLN PRO GLN SEQRES 6 F 172 LEU ILE GLN PRO GLY GLY MEN ALA TYR THR ASN ARG ARG SEQRES 7 F 172 MET ALA ALA CYS LEU ARG ASP MET GLU ILE ILE LEU ARG SEQRES 8 F 172 TYR VAL THR TYR ALA ILE LEU ALA GLY ASP SER SER VAL SEQRES 9 F 172 LEU ASP ASP ARG CYS LEU ASN GLY LEU ARG GLU THR TYR SEQRES 10 F 172 GLN ALA LEU GLY THR PRO GLY SER SER VAL ALA VAL ALA SEQRES 11 F 172 ILE GLN LYS MET LYS ASP ALA ALA ILE ALA ILE ALA ASN SEQRES 12 F 172 ASP PRO ASN GLY ILE THR PRO GLY ASP CYS SER ALA LEU SEQRES 13 F 172 MET SER GLU ILE ALA GLY TYR PHE ASP ARG ALA ALA ALA SEQRES 14 F 172 ALA VAL ALA MODRES 6YYJ MEN B 72 ASN MODIFIED RESIDUE MODRES 6YYJ MEN D 72 ASN MODIFIED RESIDUE MODRES 6YYJ MEN F 72 ASN MODIFIED RESIDUE HET MEN B 72 16 HET MEN D 72 16 HET MEN F 72 16 HET PXQ A 201 43 HET PGE A 202 24 HET PXQ B 201 80 HET PXQ B 202 80 HET MES B 203 12 HET PXQ C 201 80 HET PGE C 202 24 HET MES C 203 12 HET PGE C 204 24 HET PXQ D 201 80 HET PXQ D 202 43 HET MES D 203 12 HET PXQ E 201 43 HET PGE E 202 24 HET PGE E 203 24 HET MES E 204 25 HET PXQ F 500 80 HET PXQ F 501 80 HETNAM MEN N-METHYL ASPARAGINE HETNAM PXQ 3-[5-[[(3~{R},4~{R})-3-ETHYL-4-METHYL-5-OXIDANYLIDENE- HETNAM 2 PXQ 3,4-DIHYDROPYRROL-2-YL]METHYL]-2-[[5-[(~{Z})-(4-ETHYL- HETNAM 3 PXQ 3-METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-3- HETNAM 4 PXQ (3-HYDROXY-3-OXOPROPYL)-4-METHYL-1~{H}-PYRROL-2- HETNAM 5 PXQ YL]METHYL]-4-METHYL-1~{H}-PYRROL-3-YL]PROPANOIC ACID HETNAM PGE TRIETHYLENE GLYCOL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 2 MEN 3(C5 H10 N2 O3) FORMUL 7 PXQ 9(C33 H42 N4 O6) FORMUL 8 PGE 5(C6 H14 O4) FORMUL 11 MES 4(C6 H13 N O4 S) FORMUL 25 HOH *164(H2 O) HELIX 1 AA1 THR A 3 GLN A 15 1 13 HELIX 2 AA2 SER A 20 ASN A 47 1 28 HELIX 3 AA3 ASN A 47 PHE A 63 1 17 HELIX 4 AA4 PRO A 64 THR A 68 5 5 HELIX 5 AA5 THR A 77 GLY A 102 1 26 HELIX 6 AA6 THR A 104 LEU A 111 1 8 HELIX 7 AA7 GLY A 114 PHE A 122 1 9 HELIX 8 AA8 SER A 125 HIS A 140 1 16 HELIX 9 AA9 THR A 143 SER A 162 1 20 HELIX 10 AB1 ASP B 3 ARG B 15 1 13 HELIX 11 AB2 THR B 20 GLU B 33 1 14 HELIX 12 AB3 GLU B 33 SER B 46 1 14 HELIX 13 AB4 ASN B 47 GLN B 63 1 17 HELIX 14 AB5 PRO B 64 ILE B 67 5 4 HELIX 15 AB6 THR B 75 GLY B 100 1 26 HELIX 16 AB7 SER B 102 CYS B 109 1 8 HELIX 17 AB8 GLY B 112 GLY B 121 1 10 HELIX 18 AB9 PRO B 123 ASN B 143 1 21 HELIX 19 AC1 CYS B 153 ALA B 172 1 20 HELIX 20 AC2 THR C 3 GLN C 15 1 13 HELIX 21 AC3 SER C 20 ASN C 47 1 28 HELIX 22 AC4 ASN C 47 PHE C 63 1 17 HELIX 23 AC5 PRO C 64 THR C 68 5 5 HELIX 24 AC6 THR C 77 GLY C 102 1 26 HELIX 25 AC7 THR C 104 LEU C 111 1 8 HELIX 26 AC8 GLY C 114 PHE C 122 1 9 HELIX 27 AC9 SER C 125 HIS C 140 1 16 HELIX 28 AD1 THR C 143 LEU C 161 1 19 HELIX 29 AD2 ASP D 3 ARG D 15 1 13 HELIX 30 AD3 THR D 20 GLU D 33 1 14 HELIX 31 AD4 GLU D 33 ASN D 47 1 15 HELIX 32 AD5 ASN D 47 GLN D 63 1 17 HELIX 33 AD6 PRO D 64 ILE D 67 5 4 HELIX 34 AD7 THR D 75 GLY D 100 1 26 HELIX 35 AD8 SER D 102 CYS D 109 1 8 HELIX 36 AD9 GLY D 112 GLY D 121 1 10 HELIX 37 AE1 PRO D 123 ASN D 143 1 21 HELIX 38 AE2 CYS D 153 VAL D 171 1 19 HELIX 39 AE3 THR E 3 GLN E 15 1 13 HELIX 40 AE4 SER E 20 ASN E 47 1 28 HELIX 41 AE5 ASN E 47 PHE E 63 1 17 HELIX 42 AE6 PRO E 64 THR E 68 5 5 HELIX 43 AE7 THR E 77 GLY E 102 1 26 HELIX 44 AE8 THR E 104 LEU E 111 1 8 HELIX 45 AE9 GLY E 114 PHE E 122 1 9 HELIX 46 AF1 SER E 125 HIS E 140 1 16 HELIX 47 AF2 THR E 143 LEU E 161 1 19 HELIX 48 AF3 ASP F 3 ALA F 14 1 12 HELIX 49 AF4 THR F 20 GLU F 33 1 14 HELIX 50 AF5 GLU F 33 ASN F 47 1 15 HELIX 51 AF6 ASN F 47 GLN F 63 1 17 HELIX 52 AF7 PRO F 64 ILE F 67 5 4 HELIX 53 AF8 THR F 75 GLY F 100 1 26 HELIX 54 AF9 SER F 102 CYS F 109 1 8 HELIX 55 AG1 GLY F 112 GLY F 121 1 10 HELIX 56 AG2 PRO F 123 ASN F 143 1 21 HELIX 57 AG3 CYS F 153 ALA F 172 1 20 LINK SG CYS A 84 CAC PXQ A 201 1555 1555 1.77 LINK C GLY B 71 N MEN B 72 1555 1555 1.33 LINK C MEN B 72 N ALA B 73 1555 1555 1.33 LINK SG CYS B 82 CAC PXQ B 201 1555 1555 1.77 LINK SG CYS B 153 CAC PXQ B 202 1555 1555 1.76 LINK SG CYS C 84 CAC PXQ C 201 1555 1555 1.77 LINK C GLY D 71 N MEN D 72 1555 1555 1.32 LINK C MEN D 72 N ALA D 73 1555 1555 1.34 LINK SG CYS D 82 CAC PXQ D 201 1555 1555 1.77 LINK SG CYS D 153 CAC PXQ D 202 1555 1555 1.77 LINK SG CYS E 84 CAC PXQ E 201 1555 1555 1.77 LINK C GLY F 71 N MEN F 72 1555 1555 1.32 LINK C MEN F 72 N ALA F 73 1555 1555 1.34 LINK SG CYS F 82 CAC PXQ F 500 1555 1555 1.74 LINK SG CYS F 153 CAC PXQ F 501 1555 1555 1.77 SITE 1 AC1 24 THR A 66 SER A 72 GLN A 73 TYR A 74 SITE 2 AC1 24 ALA A 75 LYS A 83 CYS A 84 ARG A 86 SITE 3 AC1 24 ASP A 87 TYR A 90 TYR A 91 TYR A 110 SITE 4 AC1 24 LEU A 111 ILE A 118 PHE A 122 LEU A 124 SITE 5 AC1 24 TRP A 128 TYR A 129 HOH A 305 HOH A 311 SITE 6 AC1 24 HOH A 315 ARG F 57 THR F 75 ASN F 76 SITE 1 AC2 3 TYR A 156 ASN A 159 PHE E 18 SITE 1 AC3 12 MEN B 72 ARG B 78 ALA B 81 CYS B 82 SITE 2 AC3 12 ARG B 84 ASP B 85 ILE B 88 ARG B 108 SITE 3 AC3 12 LEU B 113 LEU B 120 THR B 122 SER B 126 SITE 1 AC4 18 ASN A 21 LEU A 24 ASP A 28 ASN B 35 SITE 2 AC4 18 LYS B 36 LEU B 38 ASP B 39 ASN B 143 SITE 3 AC4 18 ILE B 148 THR B 149 PRO B 150 GLY B 151 SITE 4 AC4 18 CYS B 153 HOH B 303 HOH B 306 HOH D 319 SITE 5 AC4 18 ARG E 33 GLN E 145 SITE 1 AC5 2 ASP B 106 ALA B 170 SITE 1 AC6 5 GLN C 57 THR C 67 THR C 77 PRO C 78 SITE 2 AC6 5 LYS C 81 SITE 1 AC7 3 LYS C 62 GLU C 131 TYR C 135 SITE 1 AC8 2 TYR C 156 ASN C 159 SITE 1 AC9 4 GLY C 144 ALA C 147 GLY D 147 ILE D 148 SITE 1 AD1 2 LYS E 81 HOH E 327 SITE 1 AD2 3 TYR E 156 ASN E 159 ALA E 160 SITE 1 AD3 3 LYS E 62 GLU E 131 TYR E 135 SITE 1 AD4 28 ARG B 57 ILE B 67 TYR B 74 THR B 75 SITE 2 AD4 28 ASN B 76 VAL C 59 TYR C 60 THR C 66 SITE 3 AD4 28 SER C 72 GLN C 73 TYR C 74 ALA C 75 SITE 4 AD4 28 GLY C 80 LYS C 81 ALA C 82 LYS C 83 SITE 5 AD4 28 ALA C 85 ARG C 86 ASP C 87 ILE C 88 SITE 6 AD4 28 TYR C 90 TYR C 110 PHE C 122 LEU C 124 SITE 7 AD4 28 TRP C 128 TYR C 129 HOH C 307 HOH C 316 SITE 1 AD5 15 MEN D 72 ALA D 73 ARG D 78 MET D 79 SITE 2 AD5 15 ALA D 80 ALA D 81 LEU D 83 ARG D 84 SITE 3 AD5 15 ASP D 85 MET D 86 ARG D 108 LEU D 113 SITE 4 AD5 15 LEU D 120 THR D 122 SER D 126 SITE 1 AD6 23 ASN C 21 LEU C 24 ASP C 28 ARG C 33 SITE 2 AD6 23 GLN C 145 ASN D 35 LYS D 36 LEU D 38 SITE 3 AD6 23 ASP D 39 ALA D 142 ASN D 143 ILE D 148 SITE 4 AD6 23 THR D 149 PRO D 150 GLY D 151 ASP D 152 SITE 5 AD6 23 SER D 154 ALA D 155 LEU D 156 MET D 157 SITE 6 AD6 23 HOH D 310 HOH D 318 HOH D 322 SITE 1 AD7 26 ARG D 57 ILE D 67 THR D 75 ASN D 76 SITE 2 AD7 26 TYR E 60 THR E 66 SER E 72 GLN E 73 SITE 3 AD7 26 TYR E 74 ALA E 75 GLY E 80 LYS E 81 SITE 4 AD7 26 ALA E 82 LYS E 83 ALA E 85 ARG E 86 SITE 5 AD7 26 ASP E 87 ILE E 88 TYR E 110 PHE E 122 SITE 6 AD7 26 LEU E 124 TRP E 128 TYR E 129 HOH E 304 SITE 7 AD7 26 HOH E 322 HOH E 324 SITE 1 AD8 15 MEN F 72 ALA F 73 ARG F 77 ARG F 78 SITE 2 AD8 15 MET F 79 ALA F 80 ALA F 81 LEU F 83 SITE 3 AD8 15 ARG F 84 ASP F 85 MET F 86 ARG F 108 SITE 4 AD8 15 LEU F 113 LEU F 120 THR F 122 SITE 1 AD9 21 ARG A 33 GLN A 145 LEU E 24 ASP E 28 SITE 2 AD9 21 HOH E 308 ASN F 35 LYS F 36 LEU F 38 SITE 3 AD9 21 ASP F 39 ASN F 143 ASP F 144 ILE F 148 SITE 4 AD9 21 THR F 149 PRO F 150 GLY F 151 ASP F 152 SITE 5 AD9 21 SER F 154 ALA F 155 LEU F 156 MET F 157 SITE 6 AD9 21 HOH F 604 CRYST1 118.363 98.231 104.600 90.00 90.00 90.00 P 21 21 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008449 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009560 0.00000