HEADER VIRAL PROTEIN 07-MAY-20 6Z06 TITLE CRYSTAL STRUCTURE OF PUUMALA VIRUS GC IN COMPLEX WITH FAB 4G2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB 4G2 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB 4G2 LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ENVELOPE POLYPROTEIN; COMPND 11 CHAIN: A; COMPND 12 SYNONYM: M POLYPROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYODES GLAREOLUS; SOURCE 3 ORGANISM_TAXID: 447135; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293T CRL-1573; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PHLSEC; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MYODES GLAREOLUS; SOURCE 10 ORGANISM_TAXID: 447135; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM_CELL_LINE: HEK293T CRL-1573; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PHLSEC; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: PUUMALA ORTHOHANTAVIRUS; SOURCE 17 ORGANISM_TAXID: 1980486; SOURCE 18 GENE: GPC; SOURCE 19 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 21 EXPRESSION_SYSTEM_CELL_LINE: HEK 293T CELLS; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS VIRAL GLYCOPROTEIN, CLASS II FUSION GLYCOPROTEIN, NEUTRALIZING KEYWDS 2 ANTIBODY COMPLEX, HANTAVIRUS GLYCOPROTEIN GC, BANK VOLE ANTIBODY, KEYWDS 3 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.R.RISSANEN,R.STASS,S.A.KRUMM,J.SEOW,R.J.G.HULSWIT,G.C.PAESEN, AUTHOR 2 J.HEPOJOKI,O.VAPALAHTI,A.LUNDKVIST,O.REYNARD,V.VOLCHKOV,K.J.DOORES, AUTHOR 3 J.T.HUISKONEN,T.A.BOWDEN REVDAT 3 24-JAN-24 6Z06 1 REMARK REVDAT 2 13-JAN-21 6Z06 1 JRNL REVDAT 1 30-DEC-20 6Z06 0 JRNL AUTH I.RISSANEN,R.STASS,S.A.KRUMM,J.SEOW,R.J.HULSWIT,G.C.PAESEN, JRNL AUTH 2 J.HEPOJOKI,O.VAPALAHTI,A.LUNDKVIST,O.REYNARD,V.VOLCHKOV, JRNL AUTH 3 K.J.DOORES,J.T.HUISKONEN,T.A.BOWDEN JRNL TITL MOLECULAR RATIONALE FOR ANTIBODY-MEDIATED TARGETING OF THE JRNL TITL 2 HANTAVIRUS FUSION GLYCOPROTEIN. JRNL REF ELIFE V. 9 2020 JRNL REFN ESSN 2050-084X JRNL PMID 33349334 JRNL DOI 10.7554/ELIFE.58242 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.14 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 92.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 14903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 726 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 92.6000 - 5.9847 1.00 2944 155 0.2084 0.2314 REMARK 3 2 5.9847 - 4.7502 1.00 2831 148 0.1880 0.2248 REMARK 3 3 4.7502 - 4.1498 1.00 2832 131 0.1936 0.2725 REMARK 3 4 4.1498 - 3.7704 1.00 2810 139 0.2492 0.2889 REMARK 3 5 3.7704 - 3.5001 0.99 2760 153 0.2842 0.3499 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 0 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1904 10.0916 -17.7477 REMARK 3 T TENSOR REMARK 3 T11: 0.6319 T22: 0.5605 REMARK 3 T33: 0.4813 T12: 0.0432 REMARK 3 T13: 0.0961 T23: -0.1779 REMARK 3 L TENSOR REMARK 3 L11: 6.5786 L22: 2.5647 REMARK 3 L33: 0.6787 L12: 2.6226 REMARK 3 L13: 0.1428 L23: 0.1419 REMARK 3 S TENSOR REMARK 3 S11: -0.3148 S12: -1.0700 S13: 0.4823 REMARK 3 S21: 0.0605 S22: 0.2513 S23: -0.1048 REMARK 3 S31: -0.2965 S32: 0.2033 S33: 0.0628 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 124 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0590 11.2717 -37.3757 REMARK 3 T TENSOR REMARK 3 T11: 0.8349 T22: 0.9877 REMARK 3 T33: 0.5175 T12: -0.1930 REMARK 3 T13: 0.1369 T23: -0.2382 REMARK 3 L TENSOR REMARK 3 L11: 2.6884 L22: 1.4336 REMARK 3 L33: 5.7528 L12: 0.3180 REMARK 3 L13: -3.0646 L23: 1.4445 REMARK 3 S TENSOR REMARK 3 S11: -0.0677 S12: 1.0489 S13: 0.0879 REMARK 3 S21: -0.7360 S22: 0.5574 S23: -0.1076 REMARK 3 S31: -0.4000 S32: 0.0507 S33: -0.1794 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID -1 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1321 -9.8297 -31.0969 REMARK 3 T TENSOR REMARK 3 T11: 0.6556 T22: 0.4755 REMARK 3 T33: 0.7680 T12: -0.0609 REMARK 3 T13: 0.1257 T23: -0.3426 REMARK 3 L TENSOR REMARK 3 L11: 3.9707 L22: 1.5716 REMARK 3 L33: 2.3834 L12: -0.8880 REMARK 3 L13: -0.9156 L23: 1.3348 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: 0.3133 S13: -1.3465 REMARK 3 S21: -0.2184 S22: 0.5536 S23: -0.9633 REMARK 3 S31: 0.3817 S32: 0.7222 S33: 0.1169 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 91 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3752 -3.7178 -35.8000 REMARK 3 T TENSOR REMARK 3 T11: 0.7109 T22: 0.9441 REMARK 3 T33: 1.2169 T12: -0.0650 REMARK 3 T13: 0.1318 T23: -0.5765 REMARK 3 L TENSOR REMARK 3 L11: 0.4248 L22: 1.3814 REMARK 3 L33: 1.6565 L12: 0.4138 REMARK 3 L13: 0.7674 L23: 0.7523 REMARK 3 S TENSOR REMARK 3 S11: -0.5444 S12: 1.0547 S13: -2.1339 REMARK 3 S21: -0.2252 S22: 0.6075 S23: -1.1224 REMARK 3 S31: 0.0014 S32: 0.6164 S33: -0.4047 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 668 THROUGH 797 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2729 -1.4747 -34.3797 REMARK 3 T TENSOR REMARK 3 T11: 0.4277 T22: 0.1507 REMARK 3 T33: 0.3611 T12: -0.0027 REMARK 3 T13: 0.0316 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 0.7091 L22: 1.2408 REMARK 3 L33: 6.6683 L12: -0.0134 REMARK 3 L13: -0.7511 L23: -0.3455 REMARK 3 S TENSOR REMARK 3 S11: 0.1335 S12: 0.1592 S13: -0.0325 REMARK 3 S21: -0.3797 S22: 0.0412 S23: -0.1050 REMARK 3 S31: -0.4727 S32: 0.0019 S33: -0.0049 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 798 THROUGH 946 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.0495 -1.5500 -32.9438 REMARK 3 T TENSOR REMARK 3 T11: 0.6047 T22: 0.2076 REMARK 3 T33: 0.4513 T12: 0.0045 REMARK 3 T13: 0.0378 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.5052 L22: 0.2195 REMARK 3 L33: 8.3423 L12: 0.1811 REMARK 3 L13: 0.2380 L23: -0.4385 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: 0.0839 S13: -0.0381 REMARK 3 S21: -0.3321 S22: -0.0698 S23: 0.0186 REMARK 3 S31: 0.0114 S32: 0.1511 S33: -0.0687 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 947 THROUGH 1043 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.9279 4.5562 2.9185 REMARK 3 T TENSOR REMARK 3 T11: 0.5379 T22: 0.0797 REMARK 3 T33: 0.3243 T12: -0.0906 REMARK 3 T13: 0.0044 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: 1.4967 L22: 1.2609 REMARK 3 L33: 0.4371 L12: -1.0267 REMARK 3 L13: -0.4084 L23: 0.5340 REMARK 3 S TENSOR REMARK 3 S11: -0.0881 S12: -0.1004 S13: -0.2416 REMARK 3 S21: 0.1227 S22: 0.0147 S23: 0.0643 REMARK 3 S31: -0.1213 S32: 0.0347 S33: -0.0215 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1044 THROUGH 1101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.6036 -2.0701 4.1094 REMARK 3 T TENSOR REMARK 3 T11: 0.6144 T22: 0.2554 REMARK 3 T33: 0.5595 T12: -0.0605 REMARK 3 T13: 0.1408 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.9349 L22: 2.3149 REMARK 3 L33: 0.0893 L12: -0.8455 REMARK 3 L13: 0.3471 L23: 0.0774 REMARK 3 S TENSOR REMARK 3 S11: -0.5775 S12: -0.6128 S13: -0.9141 REMARK 3 S21: 0.4743 S22: 0.1475 S23: 0.3933 REMARK 3 S31: 0.5960 S32: -0.2860 S33: 0.1451 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Z06 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108514. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.968590 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14920 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 92.633 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5J81 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG6000, 1 M LICL, 0.1 M MES PH 6, REMARK 280 6% 2-METHYL-2,4-PENTANEDIOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 25.22450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR H -1 REMARK 465 SER H 132 REMARK 465 ALA H 133 REMARK 465 ALA H 134 REMARK 465 GLN H 135 REMARK 465 THR H 136 REMARK 465 ARG H 217 REMARK 465 ASP H 218 REMARK 465 CYS H 219 REMARK 465 GLY H 220 REMARK 465 GLY H 221 REMARK 465 THR H 222 REMARK 465 LYS H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 HIS H 226 REMARK 465 HIS H 227 REMARK 465 HIS H 228 REMARK 465 HIS H 229 REMARK 465 ASN L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 465 GLY A 656 REMARK 465 PRO A 657 REMARK 465 GLY A 658 REMARK 465 GLU A 659 REMARK 465 THR A 660 REMARK 465 GLN A 661 REMARK 465 ASN A 662 REMARK 465 LEU A 663 REMARK 465 ASN A 664 REMARK 465 SER A 665 REMARK 465 GLY A 666 REMARK 465 TRP A 667 REMARK 465 PRO A 1070 REMARK 465 HIS A 1071 REMARK 465 LEU A 1072 REMARK 465 ASP A 1073 REMARK 465 ARG A 1074 REMARK 465 VAL A 1075 REMARK 465 THR A 1076 REMARK 465 GLY A 1077 REMARK 465 TYR A 1078 REMARK 465 ASN A 1079 REMARK 465 GLN A 1080 REMARK 465 ALA A 1081 REMARK 465 LYS A 1102 REMARK 465 SER A 1103 REMARK 465 GLY A 1104 REMARK 465 GLU A 1105 REMARK 465 GLY A 1106 REMARK 465 THR A 1107 REMARK 465 GLU A 1108 REMARK 465 THR A 1109 REMARK 465 SER A 1110 REMARK 465 GLN A 1111 REMARK 465 VAL A 1112 REMARK 465 ALA A 1113 REMARK 465 PRO A 1114 REMARK 465 ALA A 1115 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 162 47.69 -91.87 REMARK 500 LEU H 163 43.00 -142.91 REMARK 500 PRO H 193 33.22 -87.62 REMARK 500 TYR L 30 -39.73 76.21 REMARK 500 LYS L 31 -3.40 -159.49 REMARK 500 MET L 51 -12.40 72.66 REMARK 500 LYS L 69 14.47 53.56 REMARK 500 PRO L 141 -167.01 -79.01 REMARK 500 MET A 679 59.13 -95.41 REMARK 500 SER A 692 59.87 -96.50 REMARK 500 TYR A 767 77.71 -100.17 REMARK 500 GLU A 770 34.97 -99.39 REMARK 500 CYS A 780 70.26 57.32 REMARK 500 GLN A 871 52.67 -92.04 REMARK 500 SER A 887 77.37 -100.00 REMARK 500 ASP A 968 53.85 -92.11 REMARK 500 THR A 977 71.93 52.70 REMARK 500 ASP A1020 -166.49 -125.91 REMARK 500 SER A1083 -2.86 66.22 REMARK 500 REMARK 500 REMARK: NULL DBREF 6Z06 H -1 229 PDB 6Z06 6Z06 -1 229 DBREF 6Z06 L -1 214 PDB 6Z06 6Z06 -1 214 DBREF 6Z06 A 659 1105 UNP Q9WJ31 Q9WJ31_9VIRU 659 1105 SEQADV 6Z06 GLY A 656 UNP Q9WJ31 EXPRESSION TAG SEQADV 6Z06 PRO A 657 UNP Q9WJ31 EXPRESSION TAG SEQADV 6Z06 GLY A 658 UNP Q9WJ31 EXPRESSION TAG SEQADV 6Z06 GLY A 1106 UNP Q9WJ31 EXPRESSION TAG SEQADV 6Z06 THR A 1107 UNP Q9WJ31 EXPRESSION TAG SEQADV 6Z06 GLU A 1108 UNP Q9WJ31 EXPRESSION TAG SEQADV 6Z06 THR A 1109 UNP Q9WJ31 EXPRESSION TAG SEQADV 6Z06 SER A 1110 UNP Q9WJ31 EXPRESSION TAG SEQADV 6Z06 GLN A 1111 UNP Q9WJ31 EXPRESSION TAG SEQADV 6Z06 VAL A 1112 UNP Q9WJ31 EXPRESSION TAG SEQADV 6Z06 ALA A 1113 UNP Q9WJ31 EXPRESSION TAG SEQADV 6Z06 PRO A 1114 UNP Q9WJ31 EXPRESSION TAG SEQADV 6Z06 ALA A 1115 UNP Q9WJ31 EXPRESSION TAG SEQRES 1 H 231 THR GLY GLN VAL GLN MET LYS GLU SER GLY GLY GLY LEU SEQRES 2 H 231 VAL GLN PRO GLY LYS SER LEU LYS LEU SER CYS ALA ALA SEQRES 3 H 231 SER GLY PHE THR PHE SER ASP PHE TRP MET SER TRP VAL SEQRES 4 H 231 ARG GLN PRO SER GLY LYS GLY LEU GLU TRP VAL ALA ARG SEQRES 5 H 231 ILE ASN THR ASN GLY ASP THR THR HIS TYR THR ASP ASP SEQRES 6 H 231 MET LYS GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS SEQRES 7 H 231 THR THR LEU TYR LEU GLU MET SER PRO LEU LYS SER GLU SEQRES 8 H 231 ASP THR ALA MET TYR TYR CYS THR ARG ASP ARG LEU GLY SEQRES 9 H 231 PRO PHE ASP TYR TRP GLY GLN GLY THR THR VAL THR VAL SEQRES 10 H 231 SER SER ALA THR THR LYS GLY PRO SER VAL TYR PRO LEU SEQRES 11 H 231 ALA PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR SEQRES 12 H 231 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 H 231 THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 H 231 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 H 231 LEU SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SEQRES 16 H 231 SER GLN THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 H 231 SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG ASP CYS SEQRES 18 H 231 GLY GLY THR LYS HIS HIS HIS HIS HIS HIS SEQRES 1 L 216 THR GLY ASP ILE VAL MET THR GLN SER PRO ALA PHE PRO SEQRES 2 L 216 PRO VAL SER LEU GLY ASP THR VAL THR ILE THR CYS GLN SEQRES 3 L 216 ALA SER GLN SER VAL TYR LYS ASN LEU ALA TRP TYR GLN SEQRES 4 L 216 GLN LYS PRO GLY LYS SER PRO ARG LEU LEU ILE PHE GLY SEQRES 5 L 216 MET SER SER LEU ALA ASP GLY VAL PRO SER ARG PHE SER SEQRES 6 L 216 ALA SER GLY SER ASP LYS GLN TYR SER LEU LYS ILE ARG SEQRES 7 L 216 GLY LEU GLN PRO GLU ASP ALA ALA ILE TYR TYR CYS GLN SEQRES 8 L 216 GLN HIS TYR ILE ALA PRO TYR THR PHE GLY ALA GLY THR SEQRES 9 L 216 ARG LEU GLU ILE LYS ARG THR ASP ALA ALA PRO THR VAL SEQRES 10 L 216 SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SER GLY SEQRES 11 L 216 GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO SEQRES 12 L 216 LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU SEQRES 13 L 216 ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SEQRES 14 L 216 SER LYS ASP SER THR TYR SER MET SER SER THR LEU THR SEQRES 15 L 216 LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR SEQRES 16 L 216 CYS GLU ALA THR HIS LYS THR SER THR SER PRO ILE VAL SEQRES 17 L 216 LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 A 460 GLY PRO GLY GLU THR GLN ASN LEU ASN SER GLY TRP THR SEQRES 2 A 460 ASP THR ALA HIS GLY SER GLY ILE ILE PRO MET ARG THR SEQRES 3 A 460 ASP LEU GLU LEU ASP PHE SER LEU PRO SER SER ALA SER SEQRES 4 A 460 TYR THR TYR ARG ARG GLN LEU GLN ASN PRO ALA ASN GLU SEQRES 5 A 460 GLN GLU LYS ILE PRO PHE HIS LEU GLN ILE SER LYS GLN SEQRES 6 A 460 VAL ILE HIS ALA GLU ILE GLN HIS LEU GLY HIS TRP MET SEQRES 7 A 460 ASP GLY THR PHE ASN LEU LYS THR ALA PHE HIS CYS TYR SEQRES 8 A 460 GLY SER CYS GLU LYS TYR ALA TYR PRO TRP GLN THR ALA SEQRES 9 A 460 GLY CYS PHE ILE GLU LYS ASP TYR GLU TYR GLU SER GLY SEQRES 10 A 460 TRP GLY CYS ASN PRO PRO ASP CYS PRO GLY VAL GLY THR SEQRES 11 A 460 GLY CYS THR ALA CYS GLY VAL TYR LEU ASP LYS LEU LYS SEQRES 12 A 460 SER VAL GLY LYS ALA PHE LYS ILE VAL SER LEU ARG TYR SEQRES 13 A 460 THR ARG LYS ALA CYS ILE GLN LEU GLY THR GLU GLN THR SEQRES 14 A 460 CYS LYS SER VAL ASP SER ASN ASP CYS LEU VAL THR THR SEQRES 15 A 460 SER VAL LYS VAL CYS LEU ILE GLY THR VAL SER LYS PHE SEQRES 16 A 460 GLN PRO SER ASP THR LEU LEU PHE LEU GLY PRO LEU GLU SEQRES 17 A 460 GLN GLY GLY LEU ILE PHE LYS GLN TRP CYS THR THR THR SEQRES 18 A 460 CYS GLN PHE GLY ASP PRO GLY ASP ILE MET SER THR PRO SEQRES 19 A 460 VAL GLY MET LYS CYS PRO GLU LEU ASN GLY SER PHE ARG SEQRES 20 A 460 LYS LYS CYS ALA PHE ALA THR THR PRO VAL CYS GLN PHE SEQRES 21 A 460 ASP GLY ASN THR LEU SER GLY TYR LYS ARG MET ILE ALA SEQRES 22 A 460 THR LYS ASP SER PHE GLN SER PHE ASN VAL THR GLU PRO SEQRES 23 A 460 HIS ILE SER ALA SER SER LEU GLU TRP ILE ASP PRO ASP SEQRES 24 A 460 SER SER LEU ARG ASP HIS ILE ASN VAL ILE VAL GLY ARG SEQRES 25 A 460 ASP LEU SER PHE GLN ASP LEU SER GLU THR PRO CYS GLN SEQRES 26 A 460 VAL ASP LEU ALA THR THR SER ILE ASP GLY ALA TRP GLY SEQRES 27 A 460 SER GLY VAL GLY PHE ASN LEU VAL CYS SER VAL SER LEU SEQRES 28 A 460 THR GLU CYS SER THR PHE LEU THR SER ILE LYS ALA CYS SEQRES 29 A 460 ASP SER ALA MET CYS TYR GLY SER THR THR ALA ASN LEU SEQRES 30 A 460 LEU ARG GLY GLN ASN THR VAL HIS ILE VAL GLY LYS GLY SEQRES 31 A 460 GLY HIS SER GLY SER LYS PHE MET CYS CYS HIS ASP THR SEQRES 32 A 460 LYS CYS SER SER THR GLY LEU VAL ALA ALA ALA PRO HIS SEQRES 33 A 460 LEU ASP ARG VAL THR GLY TYR ASN GLN ALA ASP SER ASP SEQRES 34 A 460 LYS ILE PHE ASP ASP GLY ALA PRO GLU CYS GLY ILE SER SEQRES 35 A 460 CYS TRP PHE THR LYS SER GLY GLU GLY THR GLU THR SER SEQRES 36 A 460 GLN VAL ALA PRO ALA HET GOL L 301 6 HET NAG A1201 14 HET GOL A1202 6 HET GOL A1203 6 HETNAM GOL GLYCEROL HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 GOL 3(C3 H8 O3) FORMUL 5 NAG C8 H15 N O6 HELIX 1 AA1 THR H 28 PHE H 32 5 5 HELIX 2 AA2 LYS H 87 THR H 91 5 5 HELIX 3 AA3 SER L 121 THR L 126 1 6 HELIX 4 AA4 LYS L 183 GLU L 187 1 5 HELIX 5 AA5 SER A 921 THR A 929 1 9 HELIX 6 AA6 LYS A 930 PHE A 933 5 4 HELIX 7 AA7 GLY A 1095 TRP A 1099 5 5 SHEET 1 A 4 GLN H 3 SER H 7 0 SHEET 2 A 4 LEU H 18 SER H 25 -1 N SER H 25 O GLN H 3 SHEET 3 A 4 THR H 78 MET H 83 -1 N MET H 83 O LEU H 18 SHEET 4 A 4 PHE H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 B 5 GLY H 10 VAL H 12 0 SHEET 2 B 5 THR H 111 VAL H 115 1 N THR H 114 O GLY H 10 SHEET 3 B 5 ALA H 92 ASP H 99 -1 N TYR H 94 O THR H 111 SHEET 4 B 5 TRP H 33 GLN H 39 -1 N GLN H 39 O MET H 93 SHEET 5 B 5 LEU H 45 ILE H 51 -1 N ILE H 51 O MET H 34 SHEET 1 C 4 SER H 124 LEU H 128 0 SHEET 2 C 4 MET H 139 TYR H 149 -1 N LYS H 147 O SER H 124 SHEET 3 C 4 TYR H 179 PRO H 188 -1 N VAL H 187 O VAL H 140 SHEET 4 C 4 VAL H 167 THR H 169 -1 N HIS H 168 O SER H 184 SHEET 1 D 3 VAL H 154 TRP H 158 0 SHEET 2 D 3 THR H 198 HIS H 203 -1 N ALA H 202 O THR H 155 SHEET 3 D 3 THR H 208 LYS H 213 -1 N LYS H 212 O CYS H 199 SHEET 1 E 4 MET L 4 GLN L 6 0 SHEET 2 E 4 THR L 18 ALA L 25 -1 N GLN L 24 O THR L 5 SHEET 3 E 4 GLN L 70 ARG L 76 -1 N ILE L 75 O VAL L 19 SHEET 4 E 4 PHE L 62 SER L 67 -1 N SER L 67 O GLN L 70 SHEET 1 F 3 ILE L 85 GLN L 90 0 SHEET 2 F 3 LEU L 33 GLN L 38 -1 N GLN L 38 O ILE L 85 SHEET 3 F 3 PRO L 44 ILE L 48 -1 N ILE L 48 O TRP L 35 SHEET 1 G 4 THR L 114 PHE L 118 0 SHEET 2 G 4 GLY L 129 PHE L 139 -1 N ASN L 137 O THR L 114 SHEET 3 G 4 TYR L 173 THR L 182 -1 N LEU L 181 O ALA L 130 SHEET 4 G 4 VAL L 159 TRP L 163 -1 N SER L 162 O SER L 176 SHEET 1 H 4 SER L 153 ARG L 155 0 SHEET 2 H 4 ILE L 144 ILE L 150 -1 N ILE L 150 O SER L 153 SHEET 3 H 4 TYR L 192 HIS L 198 -1 N THR L 197 O ASN L 145 SHEET 4 H 4 ILE L 205 PHE L 209 -1 N PHE L 209 O TYR L 192 SHEET 1 I 5 ILE A 676 PRO A 678 0 SHEET 2 I 5 TYR A 695 GLN A 702 1 N GLN A 700 O ILE A 677 SHEET 3 I 5 LYS A 710 ILE A 717 -1 N ILE A 717 O TYR A 695 SHEET 4 I 5 ARG A 813 LEU A 819 -1 N GLN A 818 O HIS A 714 SHEET 5 I 5 GLU A 822 VAL A 828 -1 N VAL A 828 O ARG A 813 SHEET 1 J 4 LEU A 683 LEU A 689 0 SHEET 2 J 4 ARG A 958 VAL A 965 -1 N VAL A 965 O LEU A 683 SHEET 3 J 4 VAL A 839 VAL A 847 -1 N VAL A 847 O ARG A 958 SHEET 4 J 4 CYS A 833 VAL A 835 -1 N LEU A 834 O VAL A 841 SHEET 1 K 2 SER A 694 TYR A 697 0 SHEET 2 K 2 LYS A1085 ASP A1088 1 N ILE A1086 O SER A 694 SHEET 1 L 6 SER A 947 TRP A 950 0 SHEET 2 L 6 VAL A 721 HIS A 728 -1 N ALA A 724 O LEU A 948 SHEET 3 L 6 LYS A 802 THR A 812 -1 N THR A 812 O VAL A 721 SHEET 4 L 6 THR A 855 PHE A 858 -1 N PHE A 858 O LYS A 802 SHEET 5 L 6 GLY A 866 PHE A 869 -1 N PHE A 869 O THR A 855 SHEET 6 L 6 GLN A 934 PHE A 936 -1 N PHE A 936 O GLY A 866 SHEET 1 M 3 THR A 736 HIS A 744 0 SHEET 2 M 3 CYS A 787 ASP A 795 -1 N ASP A 795 O THR A 736 SHEET 3 M 3 CYS A 761 GLU A 768 -1 N TYR A 767 O THR A 788 SHEET 1 N 2 GLY A 899 LYS A 904 0 SHEET 2 N 2 VAL A 912 GLY A 917 -1 N ASP A 916 O SER A 900 SHEET 1 O 3 GLN A 980 ASP A 982 0 SHEET 2 O 3 PHE A 998 THR A1007 -1 N THR A1007 O GLN A 980 SHEET 3 O 3 GLY A1035 GLY A1043 -1 N GLY A1043 O PHE A 998 SHEET 1 P 3 SER A1027 LEU A1033 0 SHEET 2 P 3 THR A1011 CYS A1019 -1 N ILE A1016 O THR A1028 SHEET 3 P 3 MET A1053 CYS A1055 -1 N CYS A1055 O LYS A1017 SHEET 1 Q 2 GLY A 730 ASP A 734 0 SHEET 2 Q 2 LYS A 798 ALA A 803 -1 N ALA A 803 O GLY A 730 SHEET 1 R 2 THR A 985 GLY A 990 0 SHEET 2 R 2 PHE A 998 CYS A1002 -1 N VAL A1001 O THR A 986 SSBOND 1 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 2 CYS H 144 CYS H 199 1555 1555 2.03 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.03 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.03 SSBOND 5 CYS A 745 CYS A 780 1555 1555 2.03 SSBOND 6 CYS A 749 CYS A 787 1555 1555 2.03 SSBOND 7 CYS A 761 CYS A 894 1555 1555 2.03 SSBOND 8 CYS A 775 CYS A 905 1555 1555 2.03 SSBOND 9 CYS A 790 CYS A 913 1555 1555 2.03 SSBOND 10 CYS A 816 CYS A 825 1555 1555 2.03 SSBOND 11 CYS A 833 CYS A 842 1555 1555 2.03 SSBOND 12 CYS A 873 CYS A 877 1555 1555 2.03 SSBOND 13 CYS A 979 CYS A 1009 1555 1555 2.03 SSBOND 14 CYS A 1002 CYS A 1054 1555 1555 2.03 SSBOND 15 CYS A 1019 CYS A 1024 1555 1555 2.03 SSBOND 16 CYS A 1055 CYS A 1060 1555 1555 2.03 SSBOND 17 CYS A 1094 CYS A 1098 1555 1555 2.03 LINK ND2 ASN A 937 C1 NAG A1201 1555 1555 1.44 CISPEP 1 PHE H 150 PRO H 151 0 -5.14 CISPEP 2 GLU H 152 PRO H 153 0 -6.14 CISPEP 3 TRP H 192 PRO H 193 0 -0.73 CISPEP 4 ALA L 94 PRO L 95 0 -1.38 CISPEP 5 TYR L 140 PRO L 141 0 0.35 CRYST1 97.213 50.449 124.446 90.00 107.66 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010287 0.000000 0.003275 0.00000 SCALE2 0.000000 0.019822 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008433 0.00000