data_6Z13 # _entry.id 6Z13 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6Z13 pdb_00006z13 10.2210/pdb6z13/pdb WWPDB D_1292108608 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-05-26 2 'Structure model' 1 1 2022-07-06 3 'Structure model' 1 2 2024-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' database_2 4 3 'Structure model' chem_comp_atom 5 3 'Structure model' chem_comp_bond 6 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.pdbx_database_id_PubMed' 7 2 'Structure model' '_citation.title' 8 2 'Structure model' '_citation.year' 9 2 'Structure model' '_database_2.pdbx_DOI' 10 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6Z13 _pdbx_database_status.recvd_initial_deposition_date 2020-05-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Gaucher, J.-F.' 1 0000-0002-8448-1491 'Broussy, S.' 2 0000-0003-3098-5317 'Reille-Seroussi, M.' 3 0000-0002-4136-1297 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Chemistry _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 0947-6539 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Structural and ITC Characterization of Peptide-Protein Binding: Thermodynamic Consequences of Cyclization Constraints, a Case Study on Vascular Endothelial Growth Factor Ligands. ; _citation.year 2022 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/chem.202200465 _citation.pdbx_database_id_PubMed 35665969 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gaucher, J.F.' 1 ? primary 'Reille-Seroussi, M.' 2 ? primary 'Broussy, S.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'bicyclic peptide 3C' 1952.254 1 ? ? ? 'CD of Glu10 and NZ of Lys14 covalently linked by lactam bridge' 2 polymer man 'Vascular endothelial growth factor A' 11128.835 2 ? ? ? ? 3 non-polymer syn 'AMINO GROUP' 16.023 1 ? ? ? ? 4 non-polymer syn 'ACETIC ACID' 60.052 5 ? ? ? ? 5 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 2 ? ? ? ? 6 water nat water 18.015 136 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'VEGF-A,Vascular permeability factor,VPF' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes 'CDIHV(NLE)WEWECFEKL' CDIHVLWEWECFEKL P ? 2 'polypeptide(L)' no no ;EVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIG EMSFLQHNKCECRPK ; ;EVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIG EMSFLQHNKCECRPK ; V,W ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'AMINO GROUP' NH2 4 'ACETIC ACID' ACY 5 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 ASP n 1 3 ILE n 1 4 HIS n 1 5 VAL n 1 6 NLE n 1 7 TRP n 1 8 GLU n 1 9 TRP n 1 10 GLU n 1 11 CYS n 1 12 PHE n 1 13 GLU n 1 14 LYS n 1 15 LEU n 2 1 GLU n 2 2 VAL n 2 3 VAL n 2 4 LYS n 2 5 PHE n 2 6 MET n 2 7 ASP n 2 8 VAL n 2 9 TYR n 2 10 GLN n 2 11 ARG n 2 12 SER n 2 13 TYR n 2 14 CYS n 2 15 HIS n 2 16 PRO n 2 17 ILE n 2 18 GLU n 2 19 THR n 2 20 LEU n 2 21 VAL n 2 22 ASP n 2 23 ILE n 2 24 PHE n 2 25 GLN n 2 26 GLU n 2 27 TYR n 2 28 PRO n 2 29 ASP n 2 30 GLU n 2 31 ILE n 2 32 GLU n 2 33 TYR n 2 34 ILE n 2 35 PHE n 2 36 LYS n 2 37 PRO n 2 38 SER n 2 39 CYS n 2 40 VAL n 2 41 PRO n 2 42 LEU n 2 43 MET n 2 44 ARG n 2 45 CYS n 2 46 GLY n 2 47 GLY n 2 48 CYS n 2 49 CYS n 2 50 ASN n 2 51 ASP n 2 52 GLU n 2 53 GLY n 2 54 LEU n 2 55 GLU n 2 56 CYS n 2 57 VAL n 2 58 PRO n 2 59 THR n 2 60 GLU n 2 61 GLU n 2 62 SER n 2 63 ASN n 2 64 ILE n 2 65 THR n 2 66 MET n 2 67 GLN n 2 68 ILE n 2 69 MET n 2 70 ARG n 2 71 ILE n 2 72 LYS n 2 73 PRO n 2 74 HIS n 2 75 GLN n 2 76 GLY n 2 77 GLN n 2 78 HIS n 2 79 ILE n 2 80 GLY n 2 81 GLU n 2 82 MET n 2 83 SER n 2 84 PHE n 2 85 LEU n 2 86 GLN n 2 87 HIS n 2 88 ASN n 2 89 LYS n 2 90 CYS n 2 91 GLU n 2 92 CYS n 2 93 ARG n 2 94 PRO n 2 95 LYS n # _entity_src_gen.entity_id 2 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 95 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'VEGFA, VEGF' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant Rosetta2 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET22b(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 15 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details 'derived from V114 peptide from Genentench Inc.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACY non-polymer . 'ACETIC ACID' ? 'C2 H4 O2' 60.052 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 NLE 'L-peptide linking' n NORLEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 1 1 CYS CYS P . n A 1 2 ASP 2 2 2 ASP ASP P . n A 1 3 ILE 3 3 3 ILE ILE P . n A 1 4 HIS 4 4 4 HIS HIS P . n A 1 5 VAL 5 5 5 VAL VAL P . n A 1 6 NLE 6 6 6 NLE NLE P . n A 1 7 TRP 7 7 7 TRP TRP P . n A 1 8 GLU 8 8 8 GLU GLU P . n A 1 9 TRP 9 9 9 TRP TRP P . n A 1 10 GLU 10 10 10 GLU GLU P . n A 1 11 CYS 11 11 11 CYS CYS P . n A 1 12 PHE 12 12 12 PHE PHE P . n A 1 13 GLU 13 13 13 GLU GLU P . n A 1 14 LYS 14 14 14 LYS LYS P . n A 1 15 LEU 15 15 15 LEU LEU P . n B 2 1 GLU 1 13 13 GLU GLU V . n B 2 2 VAL 2 14 14 VAL VAL V . n B 2 3 VAL 3 15 15 VAL VAL V . n B 2 4 LYS 4 16 16 LYS LYS V . n B 2 5 PHE 5 17 17 PHE PHE V . n B 2 6 MET 6 18 18 MET MET V . n B 2 7 ASP 7 19 19 ASP ASP V . n B 2 8 VAL 8 20 20 VAL VAL V . n B 2 9 TYR 9 21 21 TYR TYR V . n B 2 10 GLN 10 22 22 GLN GLN V . n B 2 11 ARG 11 23 23 ARG ARG V . n B 2 12 SER 12 24 24 SER SER V . n B 2 13 TYR 13 25 25 TYR TYR V . n B 2 14 CYS 14 26 26 CYS CYS V . n B 2 15 HIS 15 27 27 HIS HIS V . n B 2 16 PRO 16 28 28 PRO PRO V . n B 2 17 ILE 17 29 29 ILE ILE V . n B 2 18 GLU 18 30 30 GLU GLU V . n B 2 19 THR 19 31 31 THR THR V . n B 2 20 LEU 20 32 32 LEU LEU V . n B 2 21 VAL 21 33 33 VAL VAL V . n B 2 22 ASP 22 34 34 ASP ASP V . n B 2 23 ILE 23 35 35 ILE ILE V . n B 2 24 PHE 24 36 36 PHE PHE V . n B 2 25 GLN 25 37 37 GLN GLN V . n B 2 26 GLU 26 38 38 GLU GLU V . n B 2 27 TYR 27 39 39 TYR TYR V . n B 2 28 PRO 28 40 40 PRO PRO V . n B 2 29 ASP 29 41 41 ASP ASP V . n B 2 30 GLU 30 42 42 GLU GLU V . n B 2 31 ILE 31 43 43 ILE ILE V . n B 2 32 GLU 32 44 44 GLU GLU V . n B 2 33 TYR 33 45 45 TYR TYR V . n B 2 34 ILE 34 46 46 ILE ILE V . n B 2 35 PHE 35 47 47 PHE PHE V . n B 2 36 LYS 36 48 48 LYS LYS V . n B 2 37 PRO 37 49 49 PRO PRO V . n B 2 38 SER 38 50 50 SER SER V . n B 2 39 CYS 39 51 51 CYS CYS V . n B 2 40 VAL 40 52 52 VAL VAL V . n B 2 41 PRO 41 53 53 PRO PRO V . n B 2 42 LEU 42 54 54 LEU LEU V . n B 2 43 MET 43 55 55 MET MET V . n B 2 44 ARG 44 56 56 ARG ARG V . n B 2 45 CYS 45 57 57 CYS CYS V . n B 2 46 GLY 46 58 58 GLY GLY V . n B 2 47 GLY 47 59 59 GLY GLY V . n B 2 48 CYS 48 60 60 CYS CYS V . n B 2 49 CYS 49 61 61 CYS CYS V . n B 2 50 ASN 50 62 62 ASN ASN V . n B 2 51 ASP 51 63 63 ASP ASP V . n B 2 52 GLU 52 64 64 GLU GLU V . n B 2 53 GLY 53 65 65 GLY GLY V . n B 2 54 LEU 54 66 66 LEU LEU V . n B 2 55 GLU 55 67 67 GLU GLU V . n B 2 56 CYS 56 68 68 CYS CYS V . n B 2 57 VAL 57 69 69 VAL VAL V . n B 2 58 PRO 58 70 70 PRO PRO V . n B 2 59 THR 59 71 71 THR THR V . n B 2 60 GLU 60 72 72 GLU GLU V . n B 2 61 GLU 61 73 73 GLU GLU V . n B 2 62 SER 62 74 74 SER SER V . n B 2 63 ASN 63 75 75 ASN ASN V . n B 2 64 ILE 64 76 76 ILE ILE V . n B 2 65 THR 65 77 77 THR THR V . n B 2 66 MET 66 78 78 MET MET V . n B 2 67 GLN 67 79 79 GLN GLN V . n B 2 68 ILE 68 80 80 ILE ILE V . n B 2 69 MET 69 81 81 MET MET V . n B 2 70 ARG 70 82 82 ARG ARG V . n B 2 71 ILE 71 83 83 ILE ILE V . n B 2 72 LYS 72 84 84 LYS LYS V . n B 2 73 PRO 73 85 85 PRO PRO V . n B 2 74 HIS 74 86 86 HIS HIS V . n B 2 75 GLN 75 87 87 GLN GLN V . n B 2 76 GLY 76 88 88 GLY GLY V . n B 2 77 GLN 77 89 89 GLN GLN V . n B 2 78 HIS 78 90 90 HIS HIS V . n B 2 79 ILE 79 91 91 ILE ILE V . n B 2 80 GLY 80 92 92 GLY GLY V . n B 2 81 GLU 81 93 93 GLU GLU V . n B 2 82 MET 82 94 94 MET MET V . n B 2 83 SER 83 95 95 SER SER V . n B 2 84 PHE 84 96 96 PHE PHE V . n B 2 85 LEU 85 97 97 LEU LEU V . n B 2 86 GLN 86 98 98 GLN GLN V . n B 2 87 HIS 87 99 99 HIS HIS V . n B 2 88 ASN 88 100 100 ASN ASN V . n B 2 89 LYS 89 101 101 LYS LYS V . n B 2 90 CYS 90 102 102 CYS CYS V . n B 2 91 GLU 91 103 103 GLU GLU V . n B 2 92 CYS 92 104 104 CYS CYS V . n B 2 93 ARG 93 105 105 ARG ARG V . n B 2 94 PRO 94 106 106 PRO PRO V . n B 2 95 LYS 95 107 107 LYS LYS V . n C 2 1 GLU 1 13 13 GLU GLU W . n C 2 2 VAL 2 14 14 VAL VAL W . n C 2 3 VAL 3 15 15 VAL VAL W . n C 2 4 LYS 4 16 16 LYS LYS W . n C 2 5 PHE 5 17 17 PHE PHE W . n C 2 6 MET 6 18 18 MET MET W . n C 2 7 ASP 7 19 19 ASP ASP W . n C 2 8 VAL 8 20 20 VAL VAL W . n C 2 9 TYR 9 21 21 TYR TYR W . n C 2 10 GLN 10 22 22 GLN GLN W . n C 2 11 ARG 11 23 23 ARG ARG W . n C 2 12 SER 12 24 24 SER SER W . n C 2 13 TYR 13 25 25 TYR TYR W . n C 2 14 CYS 14 26 26 CYS CYS W . n C 2 15 HIS 15 27 27 HIS HIS W . n C 2 16 PRO 16 28 28 PRO PRO W . n C 2 17 ILE 17 29 29 ILE ILE W . n C 2 18 GLU 18 30 30 GLU GLU W . n C 2 19 THR 19 31 31 THR THR W . n C 2 20 LEU 20 32 32 LEU LEU W . n C 2 21 VAL 21 33 33 VAL VAL W . n C 2 22 ASP 22 34 34 ASP ASP W . n C 2 23 ILE 23 35 35 ILE ILE W . n C 2 24 PHE 24 36 36 PHE PHE W . n C 2 25 GLN 25 37 37 GLN GLN W . n C 2 26 GLU 26 38 38 GLU GLU W . n C 2 27 TYR 27 39 39 TYR TYR W . n C 2 28 PRO 28 40 40 PRO PRO W . n C 2 29 ASP 29 41 41 ASP ASP W . n C 2 30 GLU 30 42 42 GLU GLU W . n C 2 31 ILE 31 43 43 ILE ILE W . n C 2 32 GLU 32 44 44 GLU GLU W . n C 2 33 TYR 33 45 45 TYR TYR W . n C 2 34 ILE 34 46 46 ILE ILE W . n C 2 35 PHE 35 47 47 PHE PHE W . n C 2 36 LYS 36 48 48 LYS LYS W . n C 2 37 PRO 37 49 49 PRO PRO W . n C 2 38 SER 38 50 50 SER SER W . n C 2 39 CYS 39 51 51 CYS CYS W . n C 2 40 VAL 40 52 52 VAL VAL W . n C 2 41 PRO 41 53 53 PRO PRO W . n C 2 42 LEU 42 54 54 LEU LEU W . n C 2 43 MET 43 55 55 MET MET W . n C 2 44 ARG 44 56 56 ARG ARG W . n C 2 45 CYS 45 57 57 CYS CYS W . n C 2 46 GLY 46 58 58 GLY GLY W . n C 2 47 GLY 47 59 59 GLY GLY W . n C 2 48 CYS 48 60 60 CYS CYS W . n C 2 49 CYS 49 61 61 CYS CYS W . n C 2 50 ASN 50 62 62 ASN ASN W . n C 2 51 ASP 51 63 63 ASP ASP W . n C 2 52 GLU 52 64 64 GLU GLU W . n C 2 53 GLY 53 65 65 GLY GLY W . n C 2 54 LEU 54 66 66 LEU LEU W . n C 2 55 GLU 55 67 67 GLU GLU W . n C 2 56 CYS 56 68 68 CYS CYS W . n C 2 57 VAL 57 69 69 VAL VAL W . n C 2 58 PRO 58 70 70 PRO PRO W . n C 2 59 THR 59 71 71 THR THR W . n C 2 60 GLU 60 72 72 GLU GLU W . n C 2 61 GLU 61 73 73 GLU GLU W . n C 2 62 SER 62 74 74 SER SER W . n C 2 63 ASN 63 75 75 ASN ASN W . n C 2 64 ILE 64 76 76 ILE ILE W . n C 2 65 THR 65 77 77 THR THR W . n C 2 66 MET 66 78 78 MET MET W . n C 2 67 GLN 67 79 79 GLN GLN W . n C 2 68 ILE 68 80 80 ILE ILE W . n C 2 69 MET 69 81 81 MET MET W . n C 2 70 ARG 70 82 82 ARG ARG W . n C 2 71 ILE 71 83 83 ILE ILE W . n C 2 72 LYS 72 84 84 LYS LYS W . n C 2 73 PRO 73 85 85 PRO PRO W . n C 2 74 HIS 74 86 86 HIS HIS W . n C 2 75 GLN 75 87 87 GLN GLN W . n C 2 76 GLY 76 88 88 GLY GLY W . n C 2 77 GLN 77 89 89 GLN GLN W . n C 2 78 HIS 78 90 90 HIS HIS W . n C 2 79 ILE 79 91 91 ILE ILE W . n C 2 80 GLY 80 92 92 GLY GLY W . n C 2 81 GLU 81 93 93 GLU GLU W . n C 2 82 MET 82 94 94 MET MET W . n C 2 83 SER 83 95 95 SER SER W . n C 2 84 PHE 84 96 96 PHE PHE W . n C 2 85 LEU 85 97 97 LEU LEU W . n C 2 86 GLN 86 98 98 GLN GLN W . n C 2 87 HIS 87 99 99 HIS HIS W . n C 2 88 ASN 88 100 100 ASN ASN W . n C 2 89 LYS 89 101 101 LYS LYS W . n C 2 90 CYS 90 102 102 CYS CYS W . n C 2 91 GLU 91 103 103 GLU GLU W . n C 2 92 CYS 92 104 104 CYS CYS W . n C 2 93 ARG 93 105 105 ARG ARG W . n C 2 94 PRO 94 106 106 PRO PRO W . n C 2 95 LYS 95 107 107 LYS LYS W . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NH2 1 101 16 NH2 NH2 P . E 4 ACY 1 201 1 ACY ACY V . F 4 ACY 1 202 2 ACY ACY V . G 4 ACY 1 203 4 ACY ACY V . H 5 MPD 1 204 6 MPD MPD V . I 4 ACY 1 201 3 ACY ACY W . J 4 ACY 1 202 5 ACY ACY W . K 5 MPD 1 203 7 MPD MPD W . L 6 HOH 1 201 82 HOH HOH P . L 6 HOH 2 202 72 HOH HOH P . L 6 HOH 3 203 127 HOH HOH P . L 6 HOH 4 204 18 HOH HOH P . L 6 HOH 5 205 103 HOH HOH P . M 6 HOH 1 301 28 HOH HOH V . M 6 HOH 2 302 86 HOH HOH V . M 6 HOH 3 303 10 HOH HOH V . M 6 HOH 4 304 110 HOH HOH V . M 6 HOH 5 305 134 HOH HOH V . M 6 HOH 6 306 50 HOH HOH V . M 6 HOH 7 307 52 HOH HOH V . M 6 HOH 8 308 12 HOH HOH V . M 6 HOH 9 309 33 HOH HOH V . M 6 HOH 10 310 98 HOH HOH V . M 6 HOH 11 311 8 HOH HOH V . M 6 HOH 12 312 27 HOH HOH V . M 6 HOH 13 313 36 HOH HOH V . M 6 HOH 14 314 100 HOH HOH V . M 6 HOH 15 315 41 HOH HOH V . M 6 HOH 16 316 111 HOH HOH V . M 6 HOH 17 317 73 HOH HOH V . M 6 HOH 18 318 56 HOH HOH V . M 6 HOH 19 319 14 HOH HOH V . M 6 HOH 20 320 46 HOH HOH V . M 6 HOH 21 321 67 HOH HOH V . M 6 HOH 22 322 1 HOH HOH V . M 6 HOH 23 323 97 HOH HOH V . M 6 HOH 24 324 101 HOH HOH V . M 6 HOH 25 325 78 HOH HOH V . M 6 HOH 26 326 121 HOH HOH V . M 6 HOH 27 327 49 HOH HOH V . M 6 HOH 28 328 96 HOH HOH V . M 6 HOH 29 329 109 HOH HOH V . M 6 HOH 30 330 13 HOH HOH V . M 6 HOH 31 331 34 HOH HOH V . M 6 HOH 32 332 54 HOH HOH V . M 6 HOH 33 333 16 HOH HOH V . M 6 HOH 34 334 105 HOH HOH V . M 6 HOH 35 335 7 HOH HOH V . M 6 HOH 36 336 43 HOH HOH V . M 6 HOH 37 337 130 HOH HOH V . M 6 HOH 38 338 108 HOH HOH V . M 6 HOH 39 339 128 HOH HOH V . M 6 HOH 40 340 58 HOH HOH V . M 6 HOH 41 341 63 HOH HOH V . M 6 HOH 42 342 118 HOH HOH V . M 6 HOH 43 343 115 HOH HOH V . M 6 HOH 44 344 3 HOH HOH V . M 6 HOH 45 345 24 HOH HOH V . M 6 HOH 46 346 68 HOH HOH V . M 6 HOH 47 347 132 HOH HOH V . M 6 HOH 48 348 129 HOH HOH V . M 6 HOH 49 349 91 HOH HOH V . M 6 HOH 50 350 122 HOH HOH V . M 6 HOH 51 351 75 HOH HOH V . M 6 HOH 52 352 124 HOH HOH V . M 6 HOH 53 353 146 HOH HOH V . M 6 HOH 54 354 138 HOH HOH V . M 6 HOH 55 355 90 HOH HOH V . M 6 HOH 56 356 117 HOH HOH V . M 6 HOH 57 357 35 HOH HOH V . N 6 HOH 1 301 6 HOH HOH W . N 6 HOH 2 302 116 HOH HOH W . N 6 HOH 3 303 17 HOH HOH W . N 6 HOH 4 304 11 HOH HOH W . N 6 HOH 5 305 37 HOH HOH W . N 6 HOH 6 306 114 HOH HOH W . N 6 HOH 7 307 62 HOH HOH W . N 6 HOH 8 308 19 HOH HOH W . N 6 HOH 9 309 99 HOH HOH W . N 6 HOH 10 310 60 HOH HOH W . N 6 HOH 11 311 61 HOH HOH W . N 6 HOH 12 312 84 HOH HOH W . N 6 HOH 13 313 29 HOH HOH W . N 6 HOH 14 314 20 HOH HOH W . N 6 HOH 15 315 55 HOH HOH W . N 6 HOH 16 316 77 HOH HOH W . N 6 HOH 17 317 113 HOH HOH W . N 6 HOH 18 318 59 HOH HOH W . N 6 HOH 19 319 44 HOH HOH W . N 6 HOH 20 320 135 HOH HOH W . N 6 HOH 21 321 30 HOH HOH W . N 6 HOH 22 322 87 HOH HOH W . N 6 HOH 23 323 4 HOH HOH W . N 6 HOH 24 324 85 HOH HOH W . N 6 HOH 25 325 125 HOH HOH W . N 6 HOH 26 326 47 HOH HOH W . N 6 HOH 27 327 21 HOH HOH W . N 6 HOH 28 328 2 HOH HOH W . N 6 HOH 29 329 140 HOH HOH W . N 6 HOH 30 330 15 HOH HOH W . N 6 HOH 31 331 92 HOH HOH W . N 6 HOH 32 332 48 HOH HOH W . N 6 HOH 33 333 23 HOH HOH W . N 6 HOH 34 334 133 HOH HOH W . N 6 HOH 35 335 94 HOH HOH W . N 6 HOH 36 336 131 HOH HOH W . N 6 HOH 37 337 81 HOH HOH W . N 6 HOH 38 338 89 HOH HOH W . N 6 HOH 39 339 51 HOH HOH W . N 6 HOH 40 340 57 HOH HOH W . N 6 HOH 41 341 106 HOH HOH W . N 6 HOH 42 342 144 HOH HOH W . N 6 HOH 43 343 31 HOH HOH W . N 6 HOH 44 344 83 HOH HOH W . N 6 HOH 45 345 88 HOH HOH W . N 6 HOH 46 346 38 HOH HOH W . N 6 HOH 47 347 25 HOH HOH W . N 6 HOH 48 348 65 HOH HOH W . N 6 HOH 49 349 69 HOH HOH W . N 6 HOH 50 350 9 HOH HOH W . N 6 HOH 51 351 64 HOH HOH W . N 6 HOH 52 352 22 HOH HOH W . N 6 HOH 53 353 123 HOH HOH W . N 6 HOH 54 354 5 HOH HOH W . N 6 HOH 55 355 40 HOH HOH W . N 6 HOH 56 356 45 HOH HOH W . N 6 HOH 57 357 39 HOH HOH W . N 6 HOH 58 358 42 HOH HOH W . N 6 HOH 59 359 79 HOH HOH W . N 6 HOH 60 360 26 HOH HOH W . N 6 HOH 61 361 107 HOH HOH W . N 6 HOH 62 362 136 HOH HOH W . N 6 HOH 63 363 142 HOH HOH W . N 6 HOH 64 364 143 HOH HOH W . N 6 HOH 65 365 71 HOH HOH W . N 6 HOH 66 366 53 HOH HOH W . N 6 HOH 67 367 145 HOH HOH W . N 6 HOH 68 368 102 HOH HOH W . N 6 HOH 69 369 95 HOH HOH W . N 6 HOH 70 370 76 HOH HOH W . N 6 HOH 71 371 32 HOH HOH W . N 6 HOH 72 372 66 HOH HOH W . N 6 HOH 73 373 70 HOH HOH W . N 6 HOH 74 374 137 HOH HOH W . # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id P _pdbx_unobs_or_zero_occ_atoms.auth_comp_id GLU _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 10 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id OE2 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id GLU _pdbx_unobs_or_zero_occ_atoms.label_seq_id 10 _pdbx_unobs_or_zero_occ_atoms.label_atom_id OE2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data collection' ? ? ? ? ? ? ? ? ? ? ? MxCuBE ? ? ? 1.18_3855 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18_3855 4 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18_3855 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6Z13 _cell.details ? _cell.formula_units_Z ? _cell.length_a 54.256 _cell.length_a_esd ? _cell.length_b 55.691 _cell.length_b_esd ? _cell.length_c 76.979 _cell.length_c_esd ? _cell.volume 232597.506 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6Z13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6Z13 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.40 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 48.80 _exptl_crystal.description 'plate crystal 200um*200um' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;(VEGF)2:2 peptide_3C complex purified on SEC and concentrated at 9.8mg/ml in Tris/HCl 10mM pH 8.5. Mix of 1ul of complex with 1 ul of reservoir : NaOAc/HCl 100mM pH 4.6 / MPD 36% (v/v) / CaCl2 20mM ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 80 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 2M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-01-29 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'KB-mirror system' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97625 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE ID23-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97625 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ID23-2 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate 25.13 _reflns.entry_id 6Z13 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.79 _reflns.d_resolution_low 45.12 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 22364 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.0 _reflns.pdbx_Rmerge_I_obs 0.068 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.075 _reflns.pdbx_Rpim_I_all 0.03 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.79 _reflns_shell.d_res_low 1.89 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.4 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 3111 _reflns_shell.percent_possible_all 97.2 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.704 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.773 _reflns_shell.pdbx_Rpim_I_all 0.316 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 36.65 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6Z13 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.80 _refine.ls_d_res_low 38.86 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 22223 _refine.ls_number_reflns_R_free 1137 _refine.ls_number_reflns_R_work 21086 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.93 _refine.ls_percent_reflns_R_free 5.12 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1965 _refine.ls_R_factor_R_free 0.2474 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1939 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.98 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1FLT _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.1751 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2564 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 38.86 _refine_hist.number_atoms_solvent 136 _refine_hist.number_atoms_total 1850 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 1677 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0179 ? 1817 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.6223 ? 2459 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0820 ? 255 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0110 ? 327 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 21.4314 ? 708 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.80 1.88 . . 134 2584 99.82 . . . 0.3677 . 0.3392 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.88 1.98 . . 144 2591 99.96 . . . 0.3270 . 0.2780 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.98 2.11 . . 142 2588 100.00 . . . 0.2784 . 0.2314 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.11 2.27 . . 137 2616 100.00 . . . 0.2358 . 0.1918 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.27 2.50 . . 147 2608 99.89 . . . 0.2012 . 0.1840 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.50 2.86 . . 152 2634 100.00 . . . 0.2710 . 0.1867 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.86 3.60 . . 152 2653 99.93 . . . 0.2803 . 0.1721 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.60 38.86 . . 129 2812 99.83 . . . 0.1943 . 0.1757 . . . . . . . . . . . # _struct.entry_id 6Z13 _struct.title 'VEGF-A 13:107 crystallized with 3C bicyclic peptide' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6Z13 _struct_keywords.text 'growth factor, peptide ligand, lactam bridge, alpha-helix stabilization, PEPTIDE BINDING PROTEIN' _struct_keywords.pdbx_keywords 'PEPTIDE BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 4 ? J N N 4 ? K N N 5 ? L N N 6 ? M N N 6 ? N N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6Z13 6Z13 ? 1 ? 1 2 UNP VEGFA_HUMAN P15692 ? 2 ;EVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIG EMSFLQHNKCECRPK ; 39 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6Z13 P 1 ? 15 ? 6Z13 1 ? 15 ? 1 15 2 2 6Z13 V 1 ? 95 ? P15692 39 ? 133 ? 13 107 3 2 6Z13 W 1 ? 95 ? P15692 39 ? 133 ? 13 107 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4770 ? 1 MORE -56 ? 1 'SSA (A^2)' 11500 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details 'Kd=39nM in Hepes/NaOH 10mM pH 7.4' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 8 ? PHE A 12 ? GLU P 8 PHE P 12 5 ? 5 HELX_P HELX_P2 AA2 LYS B 4 ? TYR B 13 ? LYS V 16 TYR V 25 1 ? 10 HELX_P HELX_P3 AA3 ILE B 23 ? TYR B 27 ? ILE V 35 TYR V 39 1 ? 5 HELX_P HELX_P4 AA4 PRO B 28 ? ILE B 31 ? PRO V 40 ILE V 43 5 ? 4 HELX_P HELX_P5 AA5 LYS C 4 ? TYR C 13 ? LYS W 16 TYR W 25 1 ? 10 HELX_P HELX_P6 AA6 ILE C 23 ? TYR C 27 ? ILE W 35 TYR W 39 1 ? 5 HELX_P HELX_P7 AA7 PRO C 28 ? ILE C 31 ? PRO W 40 ILE W 43 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 1 SG ? ? ? 1_555 A CYS 11 SG ? ? P CYS 1 P CYS 11 1_555 ? ? ? ? ? ? ? 2.045 ? ? disulf2 disulf ? ? B CYS 14 SG ? ? ? 1_555 B CYS 56 SG ? ? V CYS 26 V CYS 68 1_555 ? ? ? ? ? ? ? 2.082 ? ? disulf3 disulf ? ? B CYS 39 SG ? ? ? 1_555 C CYS 48 SG ? ? V CYS 51 W CYS 60 1_555 ? ? ? ? ? ? ? 2.064 ? ? disulf4 disulf ? ? B CYS 45 SG ? ? ? 1_555 B CYS 90 SG ? ? V CYS 57 V CYS 102 1_555 ? ? ? ? ? ? ? 1.944 ? ? disulf5 disulf ? ? B CYS 48 SG ? ? ? 1_555 C CYS 39 SG ? ? V CYS 60 W CYS 51 1_555 ? ? ? ? ? ? ? 2.094 ? ? disulf6 disulf ? ? B CYS 49 SG A ? ? 1_555 B CYS 92 SG A ? V CYS 61 V CYS 104 1_555 ? ? ? ? ? ? ? 2.021 ? ? disulf7 disulf ? ? B CYS 49 SG B ? ? 1_555 B CYS 92 SG B ? V CYS 61 V CYS 104 1_555 ? ? ? ? ? ? ? 2.016 ? ? disulf8 disulf ? ? C CYS 14 SG ? ? ? 1_555 C CYS 56 SG ? ? W CYS 26 W CYS 68 1_555 ? ? ? ? ? ? ? 2.011 ? ? disulf9 disulf ? ? C CYS 45 SG ? ? ? 1_555 C CYS 90 SG ? ? W CYS 57 W CYS 102 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf10 disulf ? ? C CYS 49 SG ? ? ? 1_555 C CYS 92 SG ? ? W CYS 61 W CYS 104 1_555 ? ? ? ? ? ? ? 1.993 ? ? covale1 covale both ? A VAL 5 C ? ? ? 1_555 A NLE 6 N ? ? P VAL 5 P NLE 6 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale2 covale both ? A NLE 6 C ? ? ? 1_555 A TRP 7 N ? ? P NLE 6 P TRP 7 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale3 covale both ? A LEU 15 C ? ? ? 1_555 D NH2 . N ? ? P LEU 15 P NH2 101 1_555 ? ? ? ? ? ? ? 1.327 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LYS 36 B . ? LYS 48 V PRO 37 B ? PRO 49 V 1 -12.33 2 LYS 36 C . ? LYS 48 W PRO 37 C ? PRO 49 W 1 -9.14 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 3 ? AA3 ? 2 ? AA4 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 HIS B 15 ? ASP B 22 ? HIS V 27 ASP V 34 AA1 2 CYS B 39 ? GLY B 46 ? CYS V 51 GLY V 58 AA2 1 ILE B 34 ? LYS B 36 ? ILE V 46 LYS V 48 AA2 2 LEU B 54 ? ILE B 71 ? LEU V 66 ILE V 83 AA2 3 HIS B 78 ? PRO B 94 ? HIS V 90 PRO V 106 AA3 1 HIS C 15 ? ASP C 22 ? HIS W 27 ASP W 34 AA3 2 CYS C 39 ? GLY C 46 ? CYS W 51 GLY W 58 AA4 1 ILE C 34 ? LYS C 36 ? ILE W 46 LYS W 48 AA4 2 LEU C 54 ? ILE C 71 ? LEU W 66 ILE W 83 AA4 3 HIS C 78 ? PRO C 94 ? HIS W 90 PRO W 106 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL B 21 ? N VAL V 33 O VAL B 40 ? O VAL V 52 AA2 1 2 N LYS B 36 ? N LYS V 48 O MET B 69 ? O MET V 81 AA2 2 3 N GLU B 55 ? N GLU V 67 O ARG B 93 ? O ARG V 105 AA3 1 2 N THR C 19 ? N THR W 31 O LEU C 42 ? O LEU W 54 AA4 1 2 N LYS C 36 ? N LYS W 48 O MET C 69 ? O MET W 81 AA4 2 3 N MET C 66 ? N MET W 78 O MET C 82 ? O MET W 94 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software P NH2 101 ? 4 'binding site for residue NH2 P 101' AC2 Software V ACY 201 ? 3 'binding site for residue ACY V 201' AC3 Software V ACY 202 ? 2 'binding site for residue ACY V 202' AC4 Software V ACY 203 ? 2 'binding site for residue ACY V 203' AC5 Software V MPD 204 ? 4 'binding site for residue MPD V 204' AC6 Software W ACY 201 ? 1 'binding site for residue ACY W 201' AC7 Software W ACY 202 ? 3 'binding site for residue ACY W 202' AC8 Software W MPD 203 ? 4 'binding site for residue MPD W 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 LYS A 14 ? LYS P 14 . ? 1_555 ? 2 AC1 4 LEU A 15 ? LEU P 15 . ? 1_555 ? 3 AC1 4 GLN B 77 ? GLN V 89 . ? 1_555 ? 4 AC1 4 PRO B 94 ? PRO V 106 . ? 1_565 ? 5 AC2 3 GLU B 1 ? GLU V 13 . ? 1_555 ? 6 AC2 3 VAL B 2 ? VAL V 14 . ? 1_555 ? 7 AC2 3 THR C 65 ? THR W 77 . ? 1_555 ? 8 AC3 2 PRO B 41 ? PRO V 53 . ? 1_555 ? 9 AC3 2 GLN B 86 ? GLN V 98 . ? 1_555 ? 10 AC4 2 ASN B 63 ? ASN V 75 . ? 3_654 ? 11 AC4 2 GLN B 77 ? GLN V 89 . ? 1_555 ? 12 AC5 4 THR B 59 ? THR V 71 . ? 3_654 ? 13 AC5 4 GLN B 67 ? GLN V 79 . ? 1_555 ? 14 AC5 4 GLU B 81 ? GLU V 93 . ? 1_555 ? 15 AC5 4 HOH M . ? HOH V 343 . ? 1_555 ? 16 AC6 1 GLN C 77 ? GLN W 89 . ? 1_555 ? 17 AC7 3 PRO C 58 ? PRO W 70 . ? 3_645 ? 18 AC7 3 THR C 59 ? THR W 71 . ? 3_645 ? 19 AC7 3 GLN C 67 ? GLN W 79 . ? 1_555 ? 20 AC8 4 PRO C 41 ? PRO W 53 . ? 1_555 ? 21 AC8 4 MET C 43 ? MET W 55 . ? 1_555 ? 22 AC8 4 ILE C 64 ? ILE W 76 . ? 1_555 ? 23 AC8 4 GLN C 86 ? GLN W 98 . ? 1_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OE1 _pdbx_validate_symm_contact.auth_asym_id_1 V _pdbx_validate_symm_contact.auth_comp_id_1 GLU _pdbx_validate_symm_contact.auth_seq_id_1 93 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 HH12 _pdbx_validate_symm_contact.auth_asym_id_2 V _pdbx_validate_symm_contact.auth_comp_id_2 ARG _pdbx_validate_symm_contact.auth_seq_id_2 105 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_654 _pdbx_validate_symm_contact.dist 1.57 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS V 26 ? ? -14.47 110.62 2 1 ASN V 62 ? B 72.03 65.82 3 1 ASP V 63 ? B 152.21 68.27 4 1 CYS W 26 ? ? -22.14 110.91 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # _pdbx_entry_details.entry_id 6Z13 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACY C C N N 1 ACY O O N N 2 ACY OXT O N N 3 ACY CH3 C N N 4 ACY HXT H N N 5 ACY H1 H N N 6 ACY H2 H N N 7 ACY H3 H N N 8 ARG N N N N 9 ARG CA C N S 10 ARG C C N N 11 ARG O O N N 12 ARG CB C N N 13 ARG CG C N N 14 ARG CD C N N 15 ARG NE N N N 16 ARG CZ C N N 17 ARG NH1 N N N 18 ARG NH2 N N N 19 ARG OXT O N N 20 ARG H H N N 21 ARG H2 H N N 22 ARG HA H N N 23 ARG HB2 H N N 24 ARG HB3 H N N 25 ARG HG2 H N N 26 ARG HG3 H N N 27 ARG HD2 H N N 28 ARG HD3 H N N 29 ARG HE H N N 30 ARG HH11 H N N 31 ARG HH12 H N N 32 ARG HH21 H N N 33 ARG HH22 H N N 34 ARG HXT H N N 35 ASN N N N N 36 ASN CA C N S 37 ASN C C N N 38 ASN O O N N 39 ASN CB C N N 40 ASN CG C N N 41 ASN OD1 O N N 42 ASN ND2 N N N 43 ASN OXT O N N 44 ASN H H N N 45 ASN H2 H N N 46 ASN HA H N N 47 ASN HB2 H N N 48 ASN HB3 H N N 49 ASN HD21 H N N 50 ASN HD22 H N N 51 ASN HXT H N N 52 ASP N N N N 53 ASP CA C N S 54 ASP C C N N 55 ASP O O N N 56 ASP CB C N N 57 ASP CG C N N 58 ASP OD1 O N N 59 ASP OD2 O N N 60 ASP OXT O N N 61 ASP H H N N 62 ASP H2 H N N 63 ASP HA H N N 64 ASP HB2 H N N 65 ASP HB3 H N N 66 ASP HD2 H N N 67 ASP HXT H N N 68 CYS N N N N 69 CYS CA C N R 70 CYS C C N N 71 CYS O O N N 72 CYS CB C N N 73 CYS SG S N N 74 CYS OXT O N N 75 CYS H H N N 76 CYS H2 H N N 77 CYS HA H N N 78 CYS HB2 H N N 79 CYS HB3 H N N 80 CYS HG H N N 81 CYS HXT H N N 82 GLN N N N N 83 GLN CA C N S 84 GLN C C N N 85 GLN O O N N 86 GLN CB C N N 87 GLN CG C N N 88 GLN CD C N N 89 GLN OE1 O N N 90 GLN NE2 N N N 91 GLN OXT O N N 92 GLN H H N N 93 GLN H2 H N N 94 GLN HA H N N 95 GLN HB2 H N N 96 GLN HB3 H N N 97 GLN HG2 H N N 98 GLN HG3 H N N 99 GLN HE21 H N N 100 GLN HE22 H N N 101 GLN HXT H N N 102 GLU N N N N 103 GLU CA C N S 104 GLU C C N N 105 GLU O O N N 106 GLU CB C N N 107 GLU CG C N N 108 GLU CD C N N 109 GLU OE1 O N N 110 GLU OE2 O N N 111 GLU OXT O N N 112 GLU H H N N 113 GLU H2 H N N 114 GLU HA H N N 115 GLU HB2 H N N 116 GLU HB3 H N N 117 GLU HG2 H N N 118 GLU HG3 H N N 119 GLU HE2 H N N 120 GLU HXT H N N 121 GLY N N N N 122 GLY CA C N N 123 GLY C C N N 124 GLY O O N N 125 GLY OXT O N N 126 GLY H H N N 127 GLY H2 H N N 128 GLY HA2 H N N 129 GLY HA3 H N N 130 GLY HXT H N N 131 HIS N N N N 132 HIS CA C N S 133 HIS C C N N 134 HIS O O N N 135 HIS CB C N N 136 HIS CG C Y N 137 HIS ND1 N Y N 138 HIS CD2 C Y N 139 HIS CE1 C Y N 140 HIS NE2 N Y N 141 HIS OXT O N N 142 HIS H H N N 143 HIS H2 H N N 144 HIS HA H N N 145 HIS HB2 H N N 146 HIS HB3 H N N 147 HIS HD1 H N N 148 HIS HD2 H N N 149 HIS HE1 H N N 150 HIS HE2 H N N 151 HIS HXT H N N 152 HOH O O N N 153 HOH H1 H N N 154 HOH H2 H N N 155 ILE N N N N 156 ILE CA C N S 157 ILE C C N N 158 ILE O O N N 159 ILE CB C N S 160 ILE CG1 C N N 161 ILE CG2 C N N 162 ILE CD1 C N N 163 ILE OXT O N N 164 ILE H H N N 165 ILE H2 H N N 166 ILE HA H N N 167 ILE HB H N N 168 ILE HG12 H N N 169 ILE HG13 H N N 170 ILE HG21 H N N 171 ILE HG22 H N N 172 ILE HG23 H N N 173 ILE HD11 H N N 174 ILE HD12 H N N 175 ILE HD13 H N N 176 ILE HXT H N N 177 LEU N N N N 178 LEU CA C N S 179 LEU C C N N 180 LEU O O N N 181 LEU CB C N N 182 LEU CG C N N 183 LEU CD1 C N N 184 LEU CD2 C N N 185 LEU OXT O N N 186 LEU H H N N 187 LEU H2 H N N 188 LEU HA H N N 189 LEU HB2 H N N 190 LEU HB3 H N N 191 LEU HG H N N 192 LEU HD11 H N N 193 LEU HD12 H N N 194 LEU HD13 H N N 195 LEU HD21 H N N 196 LEU HD22 H N N 197 LEU HD23 H N N 198 LEU HXT H N N 199 LYS N N N N 200 LYS CA C N S 201 LYS C C N N 202 LYS O O N N 203 LYS CB C N N 204 LYS CG C N N 205 LYS CD C N N 206 LYS CE C N N 207 LYS NZ N N N 208 LYS OXT O N N 209 LYS H H N N 210 LYS H2 H N N 211 LYS HA H N N 212 LYS HB2 H N N 213 LYS HB3 H N N 214 LYS HG2 H N N 215 LYS HG3 H N N 216 LYS HD2 H N N 217 LYS HD3 H N N 218 LYS HE2 H N N 219 LYS HE3 H N N 220 LYS HZ1 H N N 221 LYS HZ2 H N N 222 LYS HZ3 H N N 223 LYS HXT H N N 224 MET N N N N 225 MET CA C N S 226 MET C C N N 227 MET O O N N 228 MET CB C N N 229 MET CG C N N 230 MET SD S N N 231 MET CE C N N 232 MET OXT O N N 233 MET H H N N 234 MET H2 H N N 235 MET HA H N N 236 MET HB2 H N N 237 MET HB3 H N N 238 MET HG2 H N N 239 MET HG3 H N N 240 MET HE1 H N N 241 MET HE2 H N N 242 MET HE3 H N N 243 MET HXT H N N 244 MPD C1 C N N 245 MPD C2 C N N 246 MPD O2 O N N 247 MPD CM C N N 248 MPD C3 C N N 249 MPD C4 C N S 250 MPD O4 O N N 251 MPD C5 C N N 252 MPD H11 H N N 253 MPD H12 H N N 254 MPD H13 H N N 255 MPD HO2 H N N 256 MPD HM1 H N N 257 MPD HM2 H N N 258 MPD HM3 H N N 259 MPD H31 H N N 260 MPD H32 H N N 261 MPD H4 H N N 262 MPD HO4 H N N 263 MPD H51 H N N 264 MPD H52 H N N 265 MPD H53 H N N 266 NH2 N N N N 267 NH2 HN1 H N N 268 NH2 HN2 H N N 269 NLE N N N N 270 NLE CA C N S 271 NLE C C N N 272 NLE O O N N 273 NLE OXT O N N 274 NLE CB C N N 275 NLE CG C N N 276 NLE CD C N N 277 NLE CE C N N 278 NLE H H N N 279 NLE H2 H N N 280 NLE HA H N N 281 NLE HXT H N N 282 NLE HB2 H N N 283 NLE HB3 H N N 284 NLE HG2 H N N 285 NLE HG3 H N N 286 NLE HD2 H N N 287 NLE HD3 H N N 288 NLE HE1 H N N 289 NLE HE2 H N N 290 NLE HE3 H N N 291 PHE N N N N 292 PHE CA C N S 293 PHE C C N N 294 PHE O O N N 295 PHE CB C N N 296 PHE CG C Y N 297 PHE CD1 C Y N 298 PHE CD2 C Y N 299 PHE CE1 C Y N 300 PHE CE2 C Y N 301 PHE CZ C Y N 302 PHE OXT O N N 303 PHE H H N N 304 PHE H2 H N N 305 PHE HA H N N 306 PHE HB2 H N N 307 PHE HB3 H N N 308 PHE HD1 H N N 309 PHE HD2 H N N 310 PHE HE1 H N N 311 PHE HE2 H N N 312 PHE HZ H N N 313 PHE HXT H N N 314 PRO N N N N 315 PRO CA C N S 316 PRO C C N N 317 PRO O O N N 318 PRO CB C N N 319 PRO CG C N N 320 PRO CD C N N 321 PRO OXT O N N 322 PRO H H N N 323 PRO HA H N N 324 PRO HB2 H N N 325 PRO HB3 H N N 326 PRO HG2 H N N 327 PRO HG3 H N N 328 PRO HD2 H N N 329 PRO HD3 H N N 330 PRO HXT H N N 331 SER N N N N 332 SER CA C N S 333 SER C C N N 334 SER O O N N 335 SER CB C N N 336 SER OG O N N 337 SER OXT O N N 338 SER H H N N 339 SER H2 H N N 340 SER HA H N N 341 SER HB2 H N N 342 SER HB3 H N N 343 SER HG H N N 344 SER HXT H N N 345 THR N N N N 346 THR CA C N S 347 THR C C N N 348 THR O O N N 349 THR CB C N R 350 THR OG1 O N N 351 THR CG2 C N N 352 THR OXT O N N 353 THR H H N N 354 THR H2 H N N 355 THR HA H N N 356 THR HB H N N 357 THR HG1 H N N 358 THR HG21 H N N 359 THR HG22 H N N 360 THR HG23 H N N 361 THR HXT H N N 362 TRP N N N N 363 TRP CA C N S 364 TRP C C N N 365 TRP O O N N 366 TRP CB C N N 367 TRP CG C Y N 368 TRP CD1 C Y N 369 TRP CD2 C Y N 370 TRP NE1 N Y N 371 TRP CE2 C Y N 372 TRP CE3 C Y N 373 TRP CZ2 C Y N 374 TRP CZ3 C Y N 375 TRP CH2 C Y N 376 TRP OXT O N N 377 TRP H H N N 378 TRP H2 H N N 379 TRP HA H N N 380 TRP HB2 H N N 381 TRP HB3 H N N 382 TRP HD1 H N N 383 TRP HE1 H N N 384 TRP HE3 H N N 385 TRP HZ2 H N N 386 TRP HZ3 H N N 387 TRP HH2 H N N 388 TRP HXT H N N 389 TYR N N N N 390 TYR CA C N S 391 TYR C C N N 392 TYR O O N N 393 TYR CB C N N 394 TYR CG C Y N 395 TYR CD1 C Y N 396 TYR CD2 C Y N 397 TYR CE1 C Y N 398 TYR CE2 C Y N 399 TYR CZ C Y N 400 TYR OH O N N 401 TYR OXT O N N 402 TYR H H N N 403 TYR H2 H N N 404 TYR HA H N N 405 TYR HB2 H N N 406 TYR HB3 H N N 407 TYR HD1 H N N 408 TYR HD2 H N N 409 TYR HE1 H N N 410 TYR HE2 H N N 411 TYR HH H N N 412 TYR HXT H N N 413 VAL N N N N 414 VAL CA C N S 415 VAL C C N N 416 VAL O O N N 417 VAL CB C N N 418 VAL CG1 C N N 419 VAL CG2 C N N 420 VAL OXT O N N 421 VAL H H N N 422 VAL H2 H N N 423 VAL HA H N N 424 VAL HB H N N 425 VAL HG11 H N N 426 VAL HG12 H N N 427 VAL HG13 H N N 428 VAL HG21 H N N 429 VAL HG22 H N N 430 VAL HG23 H N N 431 VAL HXT H N N 432 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACY C O doub N N 1 ACY C OXT sing N N 2 ACY C CH3 sing N N 3 ACY OXT HXT sing N N 4 ACY CH3 H1 sing N N 5 ACY CH3 H2 sing N N 6 ACY CH3 H3 sing N N 7 ARG N CA sing N N 8 ARG N H sing N N 9 ARG N H2 sing N N 10 ARG CA C sing N N 11 ARG CA CB sing N N 12 ARG CA HA sing N N 13 ARG C O doub N N 14 ARG C OXT sing N N 15 ARG CB CG sing N N 16 ARG CB HB2 sing N N 17 ARG CB HB3 sing N N 18 ARG CG CD sing N N 19 ARG CG HG2 sing N N 20 ARG CG HG3 sing N N 21 ARG CD NE sing N N 22 ARG CD HD2 sing N N 23 ARG CD HD3 sing N N 24 ARG NE CZ sing N N 25 ARG NE HE sing N N 26 ARG CZ NH1 sing N N 27 ARG CZ NH2 doub N N 28 ARG NH1 HH11 sing N N 29 ARG NH1 HH12 sing N N 30 ARG NH2 HH21 sing N N 31 ARG NH2 HH22 sing N N 32 ARG OXT HXT sing N N 33 ASN N CA sing N N 34 ASN N H sing N N 35 ASN N H2 sing N N 36 ASN CA C sing N N 37 ASN CA CB sing N N 38 ASN CA HA sing N N 39 ASN C O doub N N 40 ASN C OXT sing N N 41 ASN CB CG sing N N 42 ASN CB HB2 sing N N 43 ASN CB HB3 sing N N 44 ASN CG OD1 doub N N 45 ASN CG ND2 sing N N 46 ASN ND2 HD21 sing N N 47 ASN ND2 HD22 sing N N 48 ASN OXT HXT sing N N 49 ASP N CA sing N N 50 ASP N H sing N N 51 ASP N H2 sing N N 52 ASP CA C sing N N 53 ASP CA CB sing N N 54 ASP CA HA sing N N 55 ASP C O doub N N 56 ASP C OXT sing N N 57 ASP CB CG sing N N 58 ASP CB HB2 sing N N 59 ASP CB HB3 sing N N 60 ASP CG OD1 doub N N 61 ASP CG OD2 sing N N 62 ASP OD2 HD2 sing N N 63 ASP OXT HXT sing N N 64 CYS N CA sing N N 65 CYS N H sing N N 66 CYS N H2 sing N N 67 CYS CA C sing N N 68 CYS CA CB sing N N 69 CYS CA HA sing N N 70 CYS C O doub N N 71 CYS C OXT sing N N 72 CYS CB SG sing N N 73 CYS CB HB2 sing N N 74 CYS CB HB3 sing N N 75 CYS SG HG sing N N 76 CYS OXT HXT sing N N 77 GLN N CA sing N N 78 GLN N H sing N N 79 GLN N H2 sing N N 80 GLN CA C sing N N 81 GLN CA CB sing N N 82 GLN CA HA sing N N 83 GLN C O doub N N 84 GLN C OXT sing N N 85 GLN CB CG sing N N 86 GLN CB HB2 sing N N 87 GLN CB HB3 sing N N 88 GLN CG CD sing N N 89 GLN CG HG2 sing N N 90 GLN CG HG3 sing N N 91 GLN CD OE1 doub N N 92 GLN CD NE2 sing N N 93 GLN NE2 HE21 sing N N 94 GLN NE2 HE22 sing N N 95 GLN OXT HXT sing N N 96 GLU N CA sing N N 97 GLU N H sing N N 98 GLU N H2 sing N N 99 GLU CA C sing N N 100 GLU CA CB sing N N 101 GLU CA HA sing N N 102 GLU C O doub N N 103 GLU C OXT sing N N 104 GLU CB CG sing N N 105 GLU CB HB2 sing N N 106 GLU CB HB3 sing N N 107 GLU CG CD sing N N 108 GLU CG HG2 sing N N 109 GLU CG HG3 sing N N 110 GLU CD OE1 doub N N 111 GLU CD OE2 sing N N 112 GLU OE2 HE2 sing N N 113 GLU OXT HXT sing N N 114 GLY N CA sing N N 115 GLY N H sing N N 116 GLY N H2 sing N N 117 GLY CA C sing N N 118 GLY CA HA2 sing N N 119 GLY CA HA3 sing N N 120 GLY C O doub N N 121 GLY C OXT sing N N 122 GLY OXT HXT sing N N 123 HIS N CA sing N N 124 HIS N H sing N N 125 HIS N H2 sing N N 126 HIS CA C sing N N 127 HIS CA CB sing N N 128 HIS CA HA sing N N 129 HIS C O doub N N 130 HIS C OXT sing N N 131 HIS CB CG sing N N 132 HIS CB HB2 sing N N 133 HIS CB HB3 sing N N 134 HIS CG ND1 sing Y N 135 HIS CG CD2 doub Y N 136 HIS ND1 CE1 doub Y N 137 HIS ND1 HD1 sing N N 138 HIS CD2 NE2 sing Y N 139 HIS CD2 HD2 sing N N 140 HIS CE1 NE2 sing Y N 141 HIS CE1 HE1 sing N N 142 HIS NE2 HE2 sing N N 143 HIS OXT HXT sing N N 144 HOH O H1 sing N N 145 HOH O H2 sing N N 146 ILE N CA sing N N 147 ILE N H sing N N 148 ILE N H2 sing N N 149 ILE CA C sing N N 150 ILE CA CB sing N N 151 ILE CA HA sing N N 152 ILE C O doub N N 153 ILE C OXT sing N N 154 ILE CB CG1 sing N N 155 ILE CB CG2 sing N N 156 ILE CB HB sing N N 157 ILE CG1 CD1 sing N N 158 ILE CG1 HG12 sing N N 159 ILE CG1 HG13 sing N N 160 ILE CG2 HG21 sing N N 161 ILE CG2 HG22 sing N N 162 ILE CG2 HG23 sing N N 163 ILE CD1 HD11 sing N N 164 ILE CD1 HD12 sing N N 165 ILE CD1 HD13 sing N N 166 ILE OXT HXT sing N N 167 LEU N CA sing N N 168 LEU N H sing N N 169 LEU N H2 sing N N 170 LEU CA C sing N N 171 LEU CA CB sing N N 172 LEU CA HA sing N N 173 LEU C O doub N N 174 LEU C OXT sing N N 175 LEU CB CG sing N N 176 LEU CB HB2 sing N N 177 LEU CB HB3 sing N N 178 LEU CG CD1 sing N N 179 LEU CG CD2 sing N N 180 LEU CG HG sing N N 181 LEU CD1 HD11 sing N N 182 LEU CD1 HD12 sing N N 183 LEU CD1 HD13 sing N N 184 LEU CD2 HD21 sing N N 185 LEU CD2 HD22 sing N N 186 LEU CD2 HD23 sing N N 187 LEU OXT HXT sing N N 188 LYS N CA sing N N 189 LYS N H sing N N 190 LYS N H2 sing N N 191 LYS CA C sing N N 192 LYS CA CB sing N N 193 LYS CA HA sing N N 194 LYS C O doub N N 195 LYS C OXT sing N N 196 LYS CB CG sing N N 197 LYS CB HB2 sing N N 198 LYS CB HB3 sing N N 199 LYS CG CD sing N N 200 LYS CG HG2 sing N N 201 LYS CG HG3 sing N N 202 LYS CD CE sing N N 203 LYS CD HD2 sing N N 204 LYS CD HD3 sing N N 205 LYS CE NZ sing N N 206 LYS CE HE2 sing N N 207 LYS CE HE3 sing N N 208 LYS NZ HZ1 sing N N 209 LYS NZ HZ2 sing N N 210 LYS NZ HZ3 sing N N 211 LYS OXT HXT sing N N 212 MET N CA sing N N 213 MET N H sing N N 214 MET N H2 sing N N 215 MET CA C sing N N 216 MET CA CB sing N N 217 MET CA HA sing N N 218 MET C O doub N N 219 MET C OXT sing N N 220 MET CB CG sing N N 221 MET CB HB2 sing N N 222 MET CB HB3 sing N N 223 MET CG SD sing N N 224 MET CG HG2 sing N N 225 MET CG HG3 sing N N 226 MET SD CE sing N N 227 MET CE HE1 sing N N 228 MET CE HE2 sing N N 229 MET CE HE3 sing N N 230 MET OXT HXT sing N N 231 MPD C1 C2 sing N N 232 MPD C1 H11 sing N N 233 MPD C1 H12 sing N N 234 MPD C1 H13 sing N N 235 MPD C2 O2 sing N N 236 MPD C2 CM sing N N 237 MPD C2 C3 sing N N 238 MPD O2 HO2 sing N N 239 MPD CM HM1 sing N N 240 MPD CM HM2 sing N N 241 MPD CM HM3 sing N N 242 MPD C3 C4 sing N N 243 MPD C3 H31 sing N N 244 MPD C3 H32 sing N N 245 MPD C4 O4 sing N N 246 MPD C4 C5 sing N N 247 MPD C4 H4 sing N N 248 MPD O4 HO4 sing N N 249 MPD C5 H51 sing N N 250 MPD C5 H52 sing N N 251 MPD C5 H53 sing N N 252 NH2 N HN1 sing N N 253 NH2 N HN2 sing N N 254 NLE N CA sing N N 255 NLE N H sing N N 256 NLE N H2 sing N N 257 NLE CA C sing N N 258 NLE CA CB sing N N 259 NLE CA HA sing N N 260 NLE C O doub N N 261 NLE C OXT sing N N 262 NLE OXT HXT sing N N 263 NLE CB CG sing N N 264 NLE CB HB2 sing N N 265 NLE CB HB3 sing N N 266 NLE CG CD sing N N 267 NLE CG HG2 sing N N 268 NLE CG HG3 sing N N 269 NLE CD CE sing N N 270 NLE CD HD2 sing N N 271 NLE CD HD3 sing N N 272 NLE CE HE1 sing N N 273 NLE CE HE2 sing N N 274 NLE CE HE3 sing N N 275 PHE N CA sing N N 276 PHE N H sing N N 277 PHE N H2 sing N N 278 PHE CA C sing N N 279 PHE CA CB sing N N 280 PHE CA HA sing N N 281 PHE C O doub N N 282 PHE C OXT sing N N 283 PHE CB CG sing N N 284 PHE CB HB2 sing N N 285 PHE CB HB3 sing N N 286 PHE CG CD1 doub Y N 287 PHE CG CD2 sing Y N 288 PHE CD1 CE1 sing Y N 289 PHE CD1 HD1 sing N N 290 PHE CD2 CE2 doub Y N 291 PHE CD2 HD2 sing N N 292 PHE CE1 CZ doub Y N 293 PHE CE1 HE1 sing N N 294 PHE CE2 CZ sing Y N 295 PHE CE2 HE2 sing N N 296 PHE CZ HZ sing N N 297 PHE OXT HXT sing N N 298 PRO N CA sing N N 299 PRO N CD sing N N 300 PRO N H sing N N 301 PRO CA C sing N N 302 PRO CA CB sing N N 303 PRO CA HA sing N N 304 PRO C O doub N N 305 PRO C OXT sing N N 306 PRO CB CG sing N N 307 PRO CB HB2 sing N N 308 PRO CB HB3 sing N N 309 PRO CG CD sing N N 310 PRO CG HG2 sing N N 311 PRO CG HG3 sing N N 312 PRO CD HD2 sing N N 313 PRO CD HD3 sing N N 314 PRO OXT HXT sing N N 315 SER N CA sing N N 316 SER N H sing N N 317 SER N H2 sing N N 318 SER CA C sing N N 319 SER CA CB sing N N 320 SER CA HA sing N N 321 SER C O doub N N 322 SER C OXT sing N N 323 SER CB OG sing N N 324 SER CB HB2 sing N N 325 SER CB HB3 sing N N 326 SER OG HG sing N N 327 SER OXT HXT sing N N 328 THR N CA sing N N 329 THR N H sing N N 330 THR N H2 sing N N 331 THR CA C sing N N 332 THR CA CB sing N N 333 THR CA HA sing N N 334 THR C O doub N N 335 THR C OXT sing N N 336 THR CB OG1 sing N N 337 THR CB CG2 sing N N 338 THR CB HB sing N N 339 THR OG1 HG1 sing N N 340 THR CG2 HG21 sing N N 341 THR CG2 HG22 sing N N 342 THR CG2 HG23 sing N N 343 THR OXT HXT sing N N 344 TRP N CA sing N N 345 TRP N H sing N N 346 TRP N H2 sing N N 347 TRP CA C sing N N 348 TRP CA CB sing N N 349 TRP CA HA sing N N 350 TRP C O doub N N 351 TRP C OXT sing N N 352 TRP CB CG sing N N 353 TRP CB HB2 sing N N 354 TRP CB HB3 sing N N 355 TRP CG CD1 doub Y N 356 TRP CG CD2 sing Y N 357 TRP CD1 NE1 sing Y N 358 TRP CD1 HD1 sing N N 359 TRP CD2 CE2 doub Y N 360 TRP CD2 CE3 sing Y N 361 TRP NE1 CE2 sing Y N 362 TRP NE1 HE1 sing N N 363 TRP CE2 CZ2 sing Y N 364 TRP CE3 CZ3 doub Y N 365 TRP CE3 HE3 sing N N 366 TRP CZ2 CH2 doub Y N 367 TRP CZ2 HZ2 sing N N 368 TRP CZ3 CH2 sing Y N 369 TRP CZ3 HZ3 sing N N 370 TRP CH2 HH2 sing N N 371 TRP OXT HXT sing N N 372 TYR N CA sing N N 373 TYR N H sing N N 374 TYR N H2 sing N N 375 TYR CA C sing N N 376 TYR CA CB sing N N 377 TYR CA HA sing N N 378 TYR C O doub N N 379 TYR C OXT sing N N 380 TYR CB CG sing N N 381 TYR CB HB2 sing N N 382 TYR CB HB3 sing N N 383 TYR CG CD1 doub Y N 384 TYR CG CD2 sing Y N 385 TYR CD1 CE1 sing Y N 386 TYR CD1 HD1 sing N N 387 TYR CD2 CE2 doub Y N 388 TYR CD2 HD2 sing N N 389 TYR CE1 CZ doub Y N 390 TYR CE1 HE1 sing N N 391 TYR CE2 CZ sing Y N 392 TYR CE2 HE2 sing N N 393 TYR CZ OH sing N N 394 TYR OH HH sing N N 395 TYR OXT HXT sing N N 396 VAL N CA sing N N 397 VAL N H sing N N 398 VAL N H2 sing N N 399 VAL CA C sing N N 400 VAL CA CB sing N N 401 VAL CA HA sing N N 402 VAL C O doub N N 403 VAL C OXT sing N N 404 VAL CB CG1 sing N N 405 VAL CB CG2 sing N N 406 VAL CB HB sing N N 407 VAL CG1 HG11 sing N N 408 VAL CG1 HG12 sing N N 409 VAL CG1 HG13 sing N N 410 VAL CG2 HG21 sing N N 411 VAL CG2 HG22 sing N N 412 VAL CG2 HG23 sing N N 413 VAL OXT HXT sing N N 414 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1FLT _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 6Z13 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.018431 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017956 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012991 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_