HEADER TRANSFERASE 13-MAY-20 6Z19 TITLE CRYSTAL STRUCTURE OF P8C9 BOUND TO CK2ALPHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASEIN KINASE II SUBUNIT ALPHA; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: CK II ALPHA; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: P2; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CSNK2A1, CK2A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHAT4; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS BTK, COVALENT FRAGMENTS, SURFACE ENTROPHY REDUCTION, CRYSTAL KEYWDS 2 ENGINEERING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.ATKINSON,J.IEGRE,P.BREAR,D.BAKER,H.SORE,M.HYVONEN,D.SPRING REVDAT 3 07-FEB-24 6Z19 1 REMARK REVDAT 2 29-MAR-23 6Z19 1 JRNL REVDAT 1 26-MAY-21 6Z19 0 JRNL AUTH E.L.ATKINSON,J.IEGRE,C.D'AMORE,P.BREAR,M.SALVI,M.HYVONEN, JRNL AUTH 2 D.R.SPRING JRNL TITL DEVELOPMENT OF SMALL CYCLIC PEPTIDES TARGETING THE CK2 ALPHA JRNL TITL 2 / BETA INTERFACE. JRNL REF CHEM.COMMUN.(CAMB.) V. 58 4791 2022 JRNL REFN ESSN 1364-548X JRNL PMID 35343996 JRNL DOI 10.1039/D2CC00707J REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 62453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3339 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4470 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 264 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2833 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 253 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.484 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3039 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2747 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4113 ; 1.789 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6362 ; 1.509 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 345 ; 6.398 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;32.399 ;21.304 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 523 ;13.610 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;22.190 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 361 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3350 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 692 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6Z19 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66306 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 345.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 26.60 REMARK 200 R MERGE (I) : 0.24100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 22.30 REMARK 200 R MERGE FOR SHELL (I) : 2.59500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CU6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 %V/V PEGSM, 0.2 M (NH4)2SO4, 0.1 M REMARK 280 NA CACOD, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 172.88150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 23.13100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 23.13100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 259.32225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 23.13100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 23.13100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.44075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 23.13100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 23.13100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 259.32225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 23.13100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 23.13100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 86.44075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 172.88150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O3 GOL B 414 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA C 432 N CB REMARK 470 ALA C 439 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL B 105 -65.44 -93.76 REMARK 500 ASP B 120 129.30 -36.65 REMARK 500 ASP B 156 38.00 -143.77 REMARK 500 ASP B 175 79.25 60.60 REMARK 500 ALA B 193 166.67 78.40 REMARK 500 MET B 208 56.56 -93.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HIS B 236 12.72 REMARK 500 HIS B 236 12.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 412 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 22 OE1 REMARK 620 2 HOH B 610 O 123.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 161 OD1 REMARK 620 2 ASP B 175 OD2 89.0 REMARK 620 3 ADP B 401 O2B 175.6 86.7 REMARK 620 4 ADP B 401 O2A 91.9 92.1 87.7 REMARK 620 5 HOH B 585 O 89.9 174.4 94.6 93.5 REMARK 620 6 HOH B 629 O 91.8 87.2 88.6 176.2 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 406 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 175 OD1 REMARK 620 2 ASP B 175 OD2 61.5 REMARK 620 3 ADP B 401 O1B 89.1 88.2 REMARK 620 4 HOH B 525 O 85.5 86.2 173.6 REMARK 620 5 HOH B 547 O 160.0 99.0 94.8 89.1 REMARK 620 6 HOH B 676 O 98.2 159.6 92.1 92.1 101.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 414 DBREF 6Z19 B 2 329 UNP P68400 CSK21_HUMAN 2 329 DBREF 6Z19 C 432 439 PDB 6Z19 6Z19 432 439 SEQRES 1 B 328 SER GLY PRO VAL PRO SER ARG ALA ARG VAL TYR THR ASP SEQRES 2 B 328 VAL ASN THR HIS ARG PRO ARG GLU TYR TRP ASP TYR GLU SEQRES 3 B 328 SER HIS VAL VAL GLU TRP GLY ASN GLN ASP ASP TYR GLN SEQRES 4 B 328 LEU VAL ARG LYS LEU GLY ARG GLY LYS TYR SER GLU VAL SEQRES 5 B 328 PHE GLU ALA ILE ASN ILE THR ASN ASN GLU LYS VAL VAL SEQRES 6 B 328 VAL LYS ILE LEU LYS PRO VAL LYS LYS LYS LYS ILE LYS SEQRES 7 B 328 ARG GLU ILE LYS ILE LEU GLU ASN LEU ARG GLY GLY PRO SEQRES 8 B 328 ASN ILE ILE THR LEU ALA ASP ILE VAL LYS ASP PRO VAL SEQRES 9 B 328 SER ARG THR PRO ALA LEU VAL PHE GLU HIS VAL ASN ASN SEQRES 10 B 328 THR ASP PHE LYS GLN LEU TYR GLN THR LEU THR ASP TYR SEQRES 11 B 328 ASP ILE ARG PHE TYR MET TYR GLU ILE LEU LYS ALA LEU SEQRES 12 B 328 ASP TYR CYS HIS SER MET GLY ILE MET HIS ARG ASP VAL SEQRES 13 B 328 LYS PRO HIS ASN VAL MET ILE ASP HIS GLU HIS ARG LYS SEQRES 14 B 328 LEU ARG LEU ILE ASP TRP GLY LEU ALA GLU PHE TYR HIS SEQRES 15 B 328 PRO GLY GLN GLU TYR ASN VAL ARG VAL ALA SER ARG TYR SEQRES 16 B 328 PHE LYS GLY PRO GLU LEU LEU VAL ASP TYR GLN MET TYR SEQRES 17 B 328 ASP TYR SER LEU ASP MET TRP SER LEU GLY CYS MET LEU SEQRES 18 B 328 ALA SER MET ILE PHE ARG LYS GLU PRO PHE PHE HIS GLY SEQRES 19 B 328 HIS ASP ASN TYR ASP GLN LEU VAL ARG ILE ALA LYS VAL SEQRES 20 B 328 LEU GLY THR GLU ASP LEU TYR ASP TYR ILE ASP LYS TYR SEQRES 21 B 328 ASN ILE GLU LEU ASP PRO ARG PHE ASN ASP ILE LEU GLY SEQRES 22 B 328 ARG HIS SER ARG LYS ARG TRP GLU ARG PHE VAL HIS SER SEQRES 23 B 328 GLU ASN GLN HIS LEU VAL SER PRO GLU ALA LEU ASP PHE SEQRES 24 B 328 LEU ASP LYS LEU LEU ARG TYR ASP HIS GLN SER ARG LEU SEQRES 25 B 328 THR ALA ARG GLU ALA MET GLU HIS PRO TYR PHE TYR THR SEQRES 26 B 328 VAL VAL LYS SEQRES 1 C 8 ALA LEU TYR GLY PHE LYS TRP ALA HET ADP B 401 27 HET ACT B 402 4 HET ACT B 403 4 HET GOL B 404 6 HET MG B 405 1 HET MG B 406 1 HET PEG B 407 7 HET SO4 B 408 5 HET SO4 B 409 5 HET SO4 B 410 5 HET SO4 B 411 5 HET NA B 412 1 HET GOL B 413 6 HET GOL B 414 6 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 6 GOL 3(C3 H8 O3) FORMUL 7 MG 2(MG 2+) FORMUL 9 PEG C4 H10 O3 FORMUL 10 SO4 4(O4 S 2-) FORMUL 14 NA NA 1+ FORMUL 17 HOH *253(H2 O) HELIX 1 AA1 PRO B 20 ASP B 25 1 6 HELIX 2 AA2 TYR B 26 HIS B 29 5 4 HELIX 3 AA3 ASN B 35 ASP B 37 5 3 HELIX 4 AA4 LYS B 75 ARG B 89 1 15 HELIX 5 AA5 ASP B 120 TYR B 125 1 6 HELIX 6 AA6 GLN B 126 LEU B 128 5 3 HELIX 7 AA7 THR B 129 MET B 150 1 22 HELIX 8 AA8 LYS B 158 HIS B 160 5 3 HELIX 9 AA9 HIS B 166 ARG B 169 5 4 HELIX 10 AB1 SER B 194 LYS B 198 5 5 HELIX 11 AB2 GLY B 199 VAL B 204 1 6 HELIX 12 AB3 TYR B 211 ARG B 228 1 18 HELIX 13 AB4 ASP B 237 GLY B 250 1 14 HELIX 14 AB5 GLY B 250 ASN B 262 1 13 HELIX 15 AB6 ASP B 266 ASN B 270 5 5 HELIX 16 AB7 ARG B 280 VAL B 285 5 6 HELIX 17 AB8 ASN B 289 VAL B 293 5 5 HELIX 18 AB9 SER B 294 LEU B 305 1 12 HELIX 19 AC1 ASP B 308 ARG B 312 5 5 HELIX 20 AC2 THR B 314 GLU B 320 1 7 HELIX 21 AC3 HIS B 321 TYR B 325 5 5 SHEET 1 AA1 5 TYR B 39 ARG B 47 0 SHEET 2 AA1 5 SER B 51 ASN B 58 -1 O GLU B 55 N VAL B 42 SHEET 3 AA1 5 LYS B 64 LEU B 70 -1 O ILE B 69 N GLU B 52 SHEET 4 AA1 5 PRO B 109 GLU B 114 -1 O PHE B 113 N VAL B 66 SHEET 5 AA1 5 LEU B 97 LYS B 102 -1 N ASP B 99 O VAL B 112 SHEET 1 AA2 2 ILE B 152 MET B 153 0 SHEET 2 AA2 2 GLU B 180 PHE B 181 -1 O GLU B 180 N MET B 153 SHEET 1 AA3 2 VAL B 162 ASP B 165 0 SHEET 2 AA3 2 LYS B 170 LEU B 173 -1 O LYS B 170 N ASP B 165 LINK OE1 GLU B 22 NA NA B 412 1555 1555 2.39 LINK OD1 ASN B 161 MG MG B 405 1555 1555 2.16 LINK OD2 ASP B 175 MG MG B 405 1555 1555 2.12 LINK OD1 ASP B 175 MG MG B 406 1555 1555 2.08 LINK OD2 ASP B 175 MG MG B 406 1555 1555 2.17 LINK O2B ADP B 401 MG MG B 405 1555 1555 2.09 LINK O2A ADP B 401 MG MG B 405 1555 1555 1.96 LINK O1B ADP B 401 MG MG B 406 1555 1555 2.02 LINK MG MG B 405 O HOH B 585 1555 1555 2.11 LINK MG MG B 405 O HOH B 629 1555 1555 2.07 LINK MG MG B 406 O HOH B 525 1555 1555 2.14 LINK MG MG B 406 O HOH B 547 1555 1555 1.99 LINK MG MG B 406 O HOH B 676 1555 1555 2.05 LINK NA NA B 412 O HOH B 610 1555 1555 2.87 CISPEP 1 GLU B 230 PRO B 231 0 -6.55 SITE 1 AC1 22 SER B 51 VAL B 53 VAL B 66 LYS B 68 SITE 2 AC1 22 ILE B 95 GLU B 114 VAL B 116 HIS B 160 SITE 3 AC1 22 ASN B 161 MET B 163 ILE B 174 ASP B 175 SITE 4 AC1 22 MG B 405 MG B 406 HOH B 547 HOH B 564 SITE 5 AC1 22 HOH B 585 HOH B 603 HOH B 629 HOH B 642 SITE 6 AC1 22 HOH B 645 HOH B 676 SITE 1 AC2 4 LYS B 158 HIS B 160 HOH B 585 HOH B 629 SITE 1 AC3 5 ASP B 156 LYS B 158 SER B 194 HOH B 547 SITE 2 AC3 5 HOH B 629 SITE 1 AC4 3 GLU B 86 ARG B 89 HOH B 523 SITE 1 AC5 5 ASN B 161 ASP B 175 ADP B 401 HOH B 585 SITE 2 AC5 5 HOH B 629 SITE 1 AC6 5 ASP B 175 ADP B 401 HOH B 525 HOH B 547 SITE 2 AC6 5 HOH B 676 SITE 1 AC7 5 ARG B 191 VAL B 192 ALA B 193 LYS B 198 SITE 2 AC7 5 ASN B 238 SITE 1 AC8 6 ARG B 89 LYS B 102 ARG B 107 HOH B 562 SITE 2 AC8 6 HOH B 583 HOH B 657 SITE 1 AC9 5 LYS B 77 ARG B 80 ARG B 155 ASN B 189 SITE 2 AC9 5 HOH B 549 SITE 1 AD1 6 ARG B 195 TYR B 196 HIS B 234 GLY B 235 SITE 2 AD1 6 HIS B 236 ARG B 244 SITE 1 AD2 3 LYS B 229 ARG B 244 HOH B 512 SITE 1 AD3 2 GLU B 22 HOH B 610 SITE 1 AD4 5 ARG B 280 TRP B 281 GLU B 282 ASP B 299 SITE 2 AD4 5 HOH B 506 SITE 1 AD5 4 ASP B 237 TYR B 239 ASP B 240 HOH B 502 CRYST1 46.262 46.262 345.763 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021616 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021616 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002892 0.00000