HEADER TRANSCRIPTION 13-MAY-20 6Z1B TITLE STRUCTURE OF K52-ACETYLATED RUTR IN COMPLEX WITH URACIL. COMPND MOL_ID: 1; COMPND 2 MOLECULE: HTH-TYPE TRANSCRIPTIONAL REGULATOR RUTR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RUT OPERON REPRESSOR; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE STRUCTURE CONTAINS ACETYL-L-LYSINE AT POSITION COMPND 7 K52. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: RUTR, YCDC, B1013, JW0998; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PRSF-DUET1 KEYWDS TRANSCRIPTIONAL REPRESSOR, ESCHERICHIA COLI, LYSINE-ACETYLATION, KEYWDS 2 RUTR, TETR-CLASS, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR M.KREMER,S.SCHULZE,M.LAMMERS REVDAT 3 24-JAN-24 6Z1B 1 REMARK REVDAT 2 15-NOV-23 6Z1B 1 ATOM REVDAT 1 01-JUN-22 6Z1B 0 JRNL AUTH M.KREMER,S.SCHULZE,U.BAUMANN JRNL TITL STRUCTURE OF K52-ACETYLATED RUTR IN COMPLEX WITH URACIL. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9800 - 5.0000 1.00 2903 139 0.1768 0.1754 REMARK 3 2 5.0000 - 3.9700 1.00 2750 153 0.1499 0.1735 REMARK 3 3 3.9700 - 3.4700 1.00 2683 172 0.1804 0.1956 REMARK 3 4 3.4700 - 3.1500 1.00 2718 145 0.1989 0.2366 REMARK 3 5 3.1500 - 2.9300 1.00 2717 125 0.2194 0.2723 REMARK 3 6 2.9300 - 2.7500 1.00 2700 134 0.2089 0.2166 REMARK 3 7 2.7500 - 2.6200 1.00 2660 148 0.2283 0.2701 REMARK 3 8 2.6200 - 2.5000 1.00 2668 140 0.2318 0.2966 REMARK 3 9 2.5000 - 2.4100 1.00 2667 129 0.2570 0.3202 REMARK 3 10 2.4100 - 2.3200 1.00 2668 139 0.2628 0.3126 REMARK 3 11 2.3200 - 2.2500 1.00 2664 146 0.3058 0.3327 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -7.5495 19.3922 -27.4843 REMARK 3 T TENSOR REMARK 3 T11: 0.3794 T22: 0.4602 REMARK 3 T33: 0.4207 T12: -0.0224 REMARK 3 T13: 0.0230 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.4616 L22: 1.1670 REMARK 3 L33: 1.7157 L12: -0.2874 REMARK 3 L13: 1.1108 L23: -0.1444 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: 0.2554 S13: 0.0890 REMARK 3 S21: 0.0069 S22: -0.0824 S23: -0.0478 REMARK 3 S31: -0.0731 S32: 0.2940 S33: -0.0005 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 13 THROUGH 70 OR REMARK 3 RESID 72 THROUGH 213)) REMARK 3 SELECTION : (CHAIN B AND (RESID 13 THROUGH 70 OR REMARK 3 RESID 72 THROUGH 213)) REMARK 3 ATOM PAIRS NUMBER : 1210 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Z1B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108621. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MICRODIFFRACTOMETER MD3UP REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JUN 1, 2017 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31447 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 48.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 1.32500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 1JYK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 % PRECIPITATION MIX 6 (25% W/V PEG REMARK 280 4000, 40% W/V 1,2,6-HEXANETRIOL), 0.1 M BUFFER SYSTEM 4 (MOPSO, REMARK 280 BIS-TRIS PH 6.5), 100 MM AMINO ACIDS MIX 2 (0.2M DL-ARGININE REMARK 280 HYDROCHLORIDE, 0.2M DL-THREONINE, 0.2M DL-HISTIDINE REMARK 280 MONOHYDROCHLORIDE MONOHYDRATE, 0.2M DL-5- HYDROXYLYSINE REMARK 280 HYDROCHLORIDE, 0.2M TRANS-4-HYDROXY-L-PROLINE), VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.15350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.00200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.27350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.00200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.15350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.27350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLN A 3 REMARK 465 GLY A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 LYS A 7 REMARK 465 THR A 8 REMARK 465 THR A 9 REMARK 465 GLY A 10 REMARK 465 LYS A 11 REMARK 465 ARG A 12 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 465 HIS A 218 REMARK 465 MET B -1 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLN B 3 REMARK 465 GLY B 4 REMARK 465 ALA B 5 REMARK 465 VAL B 6 REMARK 465 LYS B 7 REMARK 465 THR B 8 REMARK 465 THR B 9 REMARK 465 GLY B 10 REMARK 465 LYS B 11 REMARK 465 HIS B 214 REMARK 465 HIS B 215 REMARK 465 HIS B 216 REMARK 465 HIS B 217 REMARK 465 HIS B 218 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ASP A 158 OD1 ASN B 200 1.32 REMARK 500 HD22 ASN B 195 O HOH B 406 1.53 REMARK 500 O HOH B 486 O HOH B 514 1.85 REMARK 500 O HOH B 442 O HOH B 486 1.98 REMARK 500 O HOH B 488 O HOH B 511 1.98 REMARK 500 O HOH A 478 O HOH A 487 2.00 REMARK 500 O HOH B 426 O HOH B 487 2.04 REMARK 500 OD1 ASP B 29 O HOH B 401 2.15 REMARK 500 N ASP A 158 OD1 ASN B 200 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ILE A 157 NH2 ARG B 14 3454 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 46 CB GLU A 46 CG 0.217 REMARK 500 LYS A 150 CE LYS A 150 NZ 0.255 REMARK 500 ILE A 157 CB ILE A 157 CG2 0.210 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 46 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 GLU A 46 OE1 - CD - OE2 ANGL. DEV. = -9.3 DEGREES REMARK 500 GLU A 46 CG - CD - OE2 ANGL. DEV. = 13.1 DEGREES REMARK 500 LYS A 150 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG B 14 CB - CG - CD ANGL. DEV. = -21.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 212 -119.12 69.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 490 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH B 526 DISTANCE = 7.61 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue URA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue URA B 301 DBREF 6Z1B A 1 212 UNP P0ACU2 RUTR_ECOLI 1 212 DBREF 6Z1B B 1 212 UNP P0ACU2 RUTR_ECOLI 1 212 SEQADV 6Z1B MET A -1 UNP P0ACU2 INITIATING METHIONINE SEQADV 6Z1B GLY A 0 UNP P0ACU2 EXPRESSION TAG SEQADV 6Z1B HIS A 213 UNP P0ACU2 EXPRESSION TAG SEQADV 6Z1B HIS A 214 UNP P0ACU2 EXPRESSION TAG SEQADV 6Z1B HIS A 215 UNP P0ACU2 EXPRESSION TAG SEQADV 6Z1B HIS A 216 UNP P0ACU2 EXPRESSION TAG SEQADV 6Z1B HIS A 217 UNP P0ACU2 EXPRESSION TAG SEQADV 6Z1B HIS A 218 UNP P0ACU2 EXPRESSION TAG SEQADV 6Z1B MET B -1 UNP P0ACU2 INITIATING METHIONINE SEQADV 6Z1B GLY B 0 UNP P0ACU2 EXPRESSION TAG SEQADV 6Z1B HIS B 213 UNP P0ACU2 EXPRESSION TAG SEQADV 6Z1B HIS B 214 UNP P0ACU2 EXPRESSION TAG SEQADV 6Z1B HIS B 215 UNP P0ACU2 EXPRESSION TAG SEQADV 6Z1B HIS B 216 UNP P0ACU2 EXPRESSION TAG SEQADV 6Z1B HIS B 217 UNP P0ACU2 EXPRESSION TAG SEQADV 6Z1B HIS B 218 UNP P0ACU2 EXPRESSION TAG SEQRES 1 A 220 MET GLY MET THR GLN GLY ALA VAL LYS THR THR GLY LYS SEQRES 2 A 220 ARG SER ARG ALA VAL SER ALA LYS LYS LYS ALA ILE LEU SEQRES 3 A 220 SER ALA ALA LEU ASP THR PHE SER GLN PHE GLY PHE HIS SEQRES 4 A 220 GLY THR ARG LEU GLU GLN ILE ALA GLU LEU ALA GLY VAL SEQRES 5 A 220 SER ALY THR ASN LEU LEU TYR TYR PHE PRO SER LYS GLU SEQRES 6 A 220 ALA LEU TYR ILE ALA VAL LEU ARG GLN ILE LEU ASP ILE SEQRES 7 A 220 TRP LEU ALA PRO LEU LYS ALA PHE ARG GLU ASP PHE ALA SEQRES 8 A 220 PRO LEU ALA ALA ILE LYS GLU TYR ILE ARG LEU LYS LEU SEQRES 9 A 220 GLU VAL SER ARG ASP TYR PRO GLN ALA SER ARG LEU PHE SEQRES 10 A 220 CYS MET GLU MET LEU ALA GLY ALA PRO LEU LEU MET ASP SEQRES 11 A 220 GLU LEU THR GLY ASP LEU LYS ALA LEU ILE ASP GLU LYS SEQRES 12 A 220 SER ALA LEU ILE ALA GLY TRP VAL LYS SER GLY LYS LEU SEQRES 13 A 220 ALA PRO ILE ASP PRO GLN HIS LEU ILE PHE MET ILE TRP SEQRES 14 A 220 ALA SER THR GLN HIS TYR ALA ASP PHE ALA PRO GLN VAL SEQRES 15 A 220 GLU ALA VAL THR GLY ALA THR LEU ARG ASP GLU VAL PHE SEQRES 16 A 220 PHE ASN GLN THR VAL GLU ASN VAL GLN ARG ILE ILE ILE SEQRES 17 A 220 GLU GLY ILE ARG PRO ARG HIS HIS HIS HIS HIS HIS SEQRES 1 B 220 MET GLY MET THR GLN GLY ALA VAL LYS THR THR GLY LYS SEQRES 2 B 220 ARG SER ARG ALA VAL SER ALA LYS LYS LYS ALA ILE LEU SEQRES 3 B 220 SER ALA ALA LEU ASP THR PHE SER GLN PHE GLY PHE HIS SEQRES 4 B 220 GLY THR ARG LEU GLU GLN ILE ALA GLU LEU ALA GLY VAL SEQRES 5 B 220 SER ALY THR ASN LEU LEU TYR TYR PHE PRO SER LYS GLU SEQRES 6 B 220 ALA LEU TYR ILE ALA VAL LEU ARG GLN ILE LEU ASP ILE SEQRES 7 B 220 TRP LEU ALA PRO LEU LYS ALA PHE ARG GLU ASP PHE ALA SEQRES 8 B 220 PRO LEU ALA ALA ILE LYS GLU TYR ILE ARG LEU LYS LEU SEQRES 9 B 220 GLU VAL SER ARG ASP TYR PRO GLN ALA SER ARG LEU PHE SEQRES 10 B 220 CYS MET GLU MET LEU ALA GLY ALA PRO LEU LEU MET ASP SEQRES 11 B 220 GLU LEU THR GLY ASP LEU LYS ALA LEU ILE ASP GLU LYS SEQRES 12 B 220 SER ALA LEU ILE ALA GLY TRP VAL LYS SER GLY LYS LEU SEQRES 13 B 220 ALA PRO ILE ASP PRO GLN HIS LEU ILE PHE MET ILE TRP SEQRES 14 B 220 ALA SER THR GLN HIS TYR ALA ASP PHE ALA PRO GLN VAL SEQRES 15 B 220 GLU ALA VAL THR GLY ALA THR LEU ARG ASP GLU VAL PHE SEQRES 16 B 220 PHE ASN GLN THR VAL GLU ASN VAL GLN ARG ILE ILE ILE SEQRES 17 B 220 GLU GLY ILE ARG PRO ARG HIS HIS HIS HIS HIS HIS MODRES 6Z1B ALY A 52 LYS MODIFIED RESIDUE MODRES 6Z1B ALY B 52 LYS MODIFIED RESIDUE HET ALY A 52 26 HET ALY B 52 26 HET URA A 301 12 HET EDO A 302 10 HET EDO A 303 10 HET EDO A 304 10 HET URA B 301 12 HETNAM ALY N(6)-ACETYLLYSINE HETNAM URA URACIL HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 ALY 2(C8 H16 N2 O3) FORMUL 3 URA 2(C4 H4 N2 O2) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 8 HOH *216(H2 O) HELIX 1 AA1 SER A 13 THR A 39 1 27 HELIX 2 AA2 ARG A 40 GLY A 49 1 10 HELIX 3 AA3 SER A 51 PHE A 59 1 9 HELIX 4 AA4 SER A 61 ALA A 83 1 23 HELIX 5 AA5 ALA A 89 TYR A 108 1 20 HELIX 6 AA6 TYR A 108 ALA A 121 1 14 HELIX 7 AA7 LEU A 126 GLY A 132 1 7 HELIX 8 AA8 GLY A 132 SER A 151 1 20 HELIX 9 AA9 ASP A 158 PHE A 176 1 19 HELIX 10 AB1 PHE A 176 GLY A 185 1 10 HELIX 11 AB2 ASP A 190 ARG A 210 1 21 HELIX 12 AB3 SER B 13 THR B 39 1 27 HELIX 13 AB4 ARG B 40 GLY B 49 1 10 HELIX 14 AB5 SER B 51 PHE B 59 1 9 HELIX 15 AB6 SER B 61 ALA B 83 1 23 HELIX 16 AB7 ALA B 89 TYR B 108 1 20 HELIX 17 AB8 TYR B 108 ALA B 121 1 14 HELIX 18 AB9 LEU B 126 GLY B 132 1 7 HELIX 19 AC1 GLY B 132 SER B 151 1 20 HELIX 20 AC2 ASP B 158 PHE B 176 1 19 HELIX 21 AC3 PHE B 176 GLY B 185 1 10 HELIX 22 AC4 ASP B 190 ARG B 210 1 21 LINK C SER A 51 N ALY A 52 1555 1555 1.33 LINK C ALY A 52 N THR A 53 1555 1555 1.33 LINK C SER B 51 N ALY B 52 1555 1555 1.33 LINK C ALY B 52 N THR B 53 1555 1555 1.33 SITE 1 AC1 9 LEU A 74 TRP A 77 LYS A 101 PHE A 115 SITE 2 AC1 9 TRP A 167 GLN A 171 HOH A 409 PHE B 176 SITE 3 AC1 9 GLN B 179 SITE 1 AC2 2 LYS A 19 ALA A 48 SITE 1 AC3 5 PHE A 36 TYR A 66 GLU A 118 PRO A 124 SITE 2 AC3 5 HOH A 449 SITE 1 AC4 1 TYR A 57 SITE 1 AC5 9 PHE A 176 GLN A 179 LEU B 74 TRP B 77 SITE 2 AC5 9 LEU B 78 LYS B 101 TRP B 167 GLN B 171 SITE 3 AC5 9 HOH B 405 CRYST1 48.307 88.547 150.004 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020701 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011293 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006666 0.00000