HEADER CHAPERONE 13-MAY-20 6Z1D TITLE CRYSTAL STRUCTURE OF THE AAA DOMAIN OF RUBISCO ACTIVASE FROM NOSTOC TITLE 2 SP. (STRAIN PCC 7120), GADOLINIUM COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE ACTIVASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: AAA+ DOMAIN; COMPND 5 SYNONYM: RUBISCO ACTIVASE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC SP. PCC 7120 = FACHB-418; SOURCE 3 ORGANISM_TAXID: 103690; SOURCE 4 GENE: RCA, ALR1533; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PBAD33-ECGROSEL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHUE KEYWDS AAA+ DOMAIN, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR L.POPILKA,A.BRACHER REVDAT 3 15-MAY-24 6Z1D 1 REMARK REVDAT 2 27-JAN-21 6Z1D 1 JRNL REVDAT 1 23-SEP-20 6Z1D 0 JRNL AUTH M.FLECKEN,H.WANG,L.POPILKA,F.U.HARTL,A.BRACHER,M.HAYER-HARTL JRNL TITL DUAL FUNCTIONS OF A RUBISCO ACTIVASE IN METABOLIC REPAIR AND JRNL TITL 2 RECRUITMENT TO CARBOXYSOMES. JRNL REF CELL V. 183 457 2020 JRNL REFN ISSN 1097-4172 JRNL PMID 32979320 JRNL DOI 10.1016/J.CELL.2020.09.010 REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19102 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.6330 - 5.1652 1.00 2720 137 0.1978 0.2499 REMARK 3 2 5.1652 - 4.1036 1.00 2622 121 0.1779 0.2018 REMARK 3 3 4.1036 - 3.5860 1.00 2577 146 0.2117 0.2479 REMARK 3 4 3.5860 - 3.2587 1.00 2575 135 0.2411 0.2840 REMARK 3 5 3.2587 - 3.0254 1.00 2556 131 0.2640 0.2820 REMARK 3 6 3.0254 - 2.8472 1.00 2561 157 0.2687 0.3384 REMARK 3 7 2.8472 - 2.7050 0.99 2513 151 0.3115 0.3536 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4260 REMARK 3 ANGLE : 1.098 5775 REMARK 3 CHIRALITY : 0.054 654 REMARK 3 PLANARITY : 0.005 752 REMARK 3 DIHEDRAL : 14.162 1587 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 179) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0181 -44.4704 -34.2397 REMARK 3 T TENSOR REMARK 3 T11: 0.5078 T22: 0.4946 REMARK 3 T33: 0.4992 T12: -0.1143 REMARK 3 T13: -0.0928 T23: 0.0472 REMARK 3 L TENSOR REMARK 3 L11: 3.2392 L22: 4.0900 REMARK 3 L33: 5.2254 L12: -1.0338 REMARK 3 L13: -1.0321 L23: -0.7108 REMARK 3 S TENSOR REMARK 3 S11: 0.0047 S12: 0.1911 S13: 0.1079 REMARK 3 S21: -0.5435 S22: 0.1206 S23: 0.0612 REMARK 3 S31: 0.1273 S32: -0.0225 S33: -0.0276 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 180 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.9615 -68.3384 -14.7184 REMARK 3 T TENSOR REMARK 3 T11: 0.4488 T22: 0.5778 REMARK 3 T33: 0.4340 T12: 0.0279 REMARK 3 T13: 0.0436 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 2.8070 L22: 5.5741 REMARK 3 L33: 2.3514 L12: 0.7099 REMARK 3 L13: -0.5428 L23: 1.8970 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: 0.1485 S13: 0.0103 REMARK 3 S21: -0.1464 S22: 0.0057 S23: 0.4258 REMARK 3 S31: -0.1230 S32: -0.2852 S33: 0.0643 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 179) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5446 -34.4851 -27.6098 REMARK 3 T TENSOR REMARK 3 T11: 0.4699 T22: 0.4399 REMARK 3 T33: 0.2967 T12: 0.0506 REMARK 3 T13: -0.0758 T23: -0.0654 REMARK 3 L TENSOR REMARK 3 L11: 5.0052 L22: 4.5855 REMARK 3 L33: 3.3105 L12: 0.0181 REMARK 3 L13: -0.3773 L23: 0.5231 REMARK 3 S TENSOR REMARK 3 S11: -0.2216 S12: 0.0121 S13: -0.0279 REMARK 3 S21: -0.2703 S22: 0.0719 S23: -0.0264 REMARK 3 S31: -0.0763 S32: -0.1459 S33: 0.1455 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 180 THROUGH 278) REMARK 3 ORIGIN FOR THE GROUP (A): -29.0806 -27.0409 -16.3893 REMARK 3 T TENSOR REMARK 3 T11: 0.6007 T22: 0.8489 REMARK 3 T33: 0.7956 T12: 0.1916 REMARK 3 T13: -0.0126 T23: -0.0872 REMARK 3 L TENSOR REMARK 3 L11: 8.6193 L22: 1.5187 REMARK 3 L33: 3.6314 L12: 2.7792 REMARK 3 L13: 4.4482 L23: 2.1835 REMARK 3 S TENSOR REMARK 3 S11: -0.1996 S12: -0.8288 S13: 0.3225 REMARK 3 S21: 0.0068 S22: 0.1118 S23: 0.5095 REMARK 3 S31: -0.2126 S32: -0.4344 S33: 0.1018 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Z1D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108632. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.68745 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION SEPTEMBER 26, 2012 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19125 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.705 REMARK 200 RESOLUTION RANGE LOW (A) : 48.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 37.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 19.30 REMARK 200 R MERGE FOR SHELL (I) : 0.62400 REMARK 200 R SYM FOR SHELL (I) : 0.62400 REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXDE VERSION 2006/3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M NA-ACETATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 55.99500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.32873 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 94.60600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 55.99500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.32873 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 94.60600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 55.99500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.32873 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 94.60600 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 55.99500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 32.32873 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 94.60600 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 55.99500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 32.32873 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 94.60600 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 55.99500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 32.32873 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 94.60600 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 64.65746 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 189.21200 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 64.65746 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 189.21200 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 64.65746 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 189.21200 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 64.65746 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 189.21200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 64.65746 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 189.21200 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 64.65746 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 189.21200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 68460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -221.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -55.99500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -96.98618 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 55.99500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -96.98618 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 276 REMARK 465 GLN A 277 REMARK 465 GLN A 278 REMARK 465 ARG A 279 REMARK 465 VAL A 280 REMARK 465 ASP A 281 REMARK 465 ASN A 282 REMARK 465 SER A 283 REMARK 465 GLN A 284 REMARK 465 LEU A 285 REMARK 465 VAL A 286 REMARK 465 ASP A 287 REMARK 465 GLU A 288 REMARK 465 TYR A 289 REMARK 465 ASN A 290 REMARK 465 ARG A 291 REMARK 465 ALA B 105 REMARK 465 GLY B 106 REMARK 465 ALA B 107 REMARK 465 GLY B 108 REMARK 465 ARG B 109 REMARK 465 PHE B 110 REMARK 465 ASP B 111 REMARK 465 GLU B 112 REMARK 465 GLY B 113 REMARK 465 THR B 114 REMARK 465 GLN B 115 REMARK 465 ASN B 248 REMARK 465 SER B 249 REMARK 465 LEU B 250 REMARK 465 GLU B 251 REMARK 465 ALA B 252 REMARK 465 PRO B 253 REMARK 465 PRO B 254 REMARK 465 ARG B 279 REMARK 465 VAL B 280 REMARK 465 ASP B 281 REMARK 465 ASN B 282 REMARK 465 SER B 283 REMARK 465 GLN B 284 REMARK 465 LEU B 285 REMARK 465 VAL B 286 REMARK 465 ASP B 287 REMARK 465 GLU B 288 REMARK 465 TYR B 289 REMARK 465 ASN B 290 REMARK 465 ARG B 291 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 ARG A 109 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 ARG A 241 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 52 CG CD OE1 OE2 REMARK 470 ASP B 104 CG OD1 OD2 REMARK 470 TYR B 116 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 212 CG CD CE NZ REMARK 470 GLU B 240 CG CD OE1 OE2 REMARK 470 LEU B 244 CG CD1 CD2 REMARK 470 GLU B 255 CG CD OE1 OE2 REMARK 470 PHE B 256 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 257 CG CD CE NZ REMARK 470 LYS B 258 CG CD CE NZ REMARK 470 LEU B 274 CG CD1 CD2 REMARK 470 GLN B 278 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 81 HG1 THR A 85 1.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 65.04 -113.34 REMARK 500 LYS A 43 -76.15 -55.02 REMARK 500 LEU A 103 -7.83 -59.49 REMARK 500 TYR A 143 -30.77 -141.30 REMARK 500 ASP A 144 68.50 -118.65 REMARK 500 SER A 161 156.69 -45.08 REMARK 500 SER A 249 38.49 -97.72 REMARK 500 LEU A 250 -78.78 -78.17 REMARK 500 SER B 161 147.95 -39.80 REMARK 500 PHE B 261 -0.31 65.50 REMARK 500 GLN B 277 -96.52 -117.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD A 403 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 83 NH2 REMARK 620 2 ARG B 92 NH2 44.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD A 401 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 204 OE1 REMARK 620 2 GLU A 204 OE2 44.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 GD B 302 GD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS B 39 NZ REMARK 620 2 ADP B 301 O2B 111.9 REMARK 620 3 ADP B 301 O1A 153.6 68.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GD A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GD B 302 DBREF 6Z1D A 2 291 UNP P58555 RCA_NOSS1 2 291 DBREF 6Z1D B 2 291 UNP P58555 RCA_NOSS1 2 291 SEQRES 1 A 290 SER TYR TYR ILE ALA PRO ARG PHE LEU ASP LYS LEU ALA SEQRES 2 A 290 VAL HIS ILE THR LYS ASN PHE LEU ASN ILE PRO GLY VAL SEQRES 3 A 290 ARG VAL PRO LEU ILE LEU GLY ILE HIS GLY ARG LYS GLY SEQRES 4 A 290 GLU GLY LYS THR PHE GLN CYS GLU LEU ALA PHE GLU LYS SEQRES 5 A 290 MET GLY ILE GLU VAL THR LEU ILE SER GLY GLY GLU LEU SEQRES 6 A 290 GLU SER PRO ASP ALA GLY ASP PRO ALA ARG LEU ILE ARG SEQRES 7 A 290 LEU ARG TYR ARG GLU THR ALA GLU LEU ILE LYS VAL ARG SEQRES 8 A 290 GLY LYS MET CYS VAL LEU MET ILE ASN ASP LEU ASP ALA SEQRES 9 A 290 GLY ALA GLY ARG PHE ASP GLU GLY THR GLN TYR THR VAL SEQRES 10 A 290 ASN THR GLN LEU VAL ASN ALA THR LEU MET ASN ILE ALA SEQRES 11 A 290 ASP ASN PRO THR ASP VAL GLN LEU PRO GLY SER TYR ASP SEQRES 12 A 290 SER ASN PRO ILE ARG ARG VAL PRO ILE ILE VAL THR GLY SEQRES 13 A 290 ASN ASP PHE SER THR LEU TYR ALA PRO LEU ILE ARG ASP SEQRES 14 A 290 GLY ARG MET GLU LYS PHE TYR TRP GLU PRO ASN ARG ASP SEQRES 15 A 290 ASP LYS VAL GLY ILE VAL GLY GLY ILE PHE ALA GLU ASP SEQRES 16 A 290 GLY LEU SER GLN ARG GLU ILE GLU GLN LEU VAL ASP THR SEQRES 17 A 290 PHE PRO LYS GLN SER ILE ASP PHE PHE SER ALA LEU ARG SEQRES 18 A 290 SER ARG ILE TYR ASP ILE GLN ILE ARG ASP PHE ILE HIS SEQRES 19 A 290 LYS VAL GLY PHE GLU ARG ILE SER LEU ARG VAL VAL ASN SEQRES 20 A 290 SER LEU GLU ALA PRO PRO GLU PHE LYS LYS PRO ASP PHE SEQRES 21 A 290 SER LEU ALA HIS LEU ILE GLU SER GLY ASN LEU VAL LEU SEQRES 22 A 290 GLY GLU GLN GLN ARG VAL ASP ASN SER GLN LEU VAL ASP SEQRES 23 A 290 GLU TYR ASN ARG SEQRES 1 B 290 SER TYR TYR ILE ALA PRO ARG PHE LEU ASP LYS LEU ALA SEQRES 2 B 290 VAL HIS ILE THR LYS ASN PHE LEU ASN ILE PRO GLY VAL SEQRES 3 B 290 ARG VAL PRO LEU ILE LEU GLY ILE HIS GLY ARG LYS GLY SEQRES 4 B 290 GLU GLY LYS THR PHE GLN CYS GLU LEU ALA PHE GLU LYS SEQRES 5 B 290 MET GLY ILE GLU VAL THR LEU ILE SER GLY GLY GLU LEU SEQRES 6 B 290 GLU SER PRO ASP ALA GLY ASP PRO ALA ARG LEU ILE ARG SEQRES 7 B 290 LEU ARG TYR ARG GLU THR ALA GLU LEU ILE LYS VAL ARG SEQRES 8 B 290 GLY LYS MET CYS VAL LEU MET ILE ASN ASP LEU ASP ALA SEQRES 9 B 290 GLY ALA GLY ARG PHE ASP GLU GLY THR GLN TYR THR VAL SEQRES 10 B 290 ASN THR GLN LEU VAL ASN ALA THR LEU MET ASN ILE ALA SEQRES 11 B 290 ASP ASN PRO THR ASP VAL GLN LEU PRO GLY SER TYR ASP SEQRES 12 B 290 SER ASN PRO ILE ARG ARG VAL PRO ILE ILE VAL THR GLY SEQRES 13 B 290 ASN ASP PHE SER THR LEU TYR ALA PRO LEU ILE ARG ASP SEQRES 14 B 290 GLY ARG MET GLU LYS PHE TYR TRP GLU PRO ASN ARG ASP SEQRES 15 B 290 ASP LYS VAL GLY ILE VAL GLY GLY ILE PHE ALA GLU ASP SEQRES 16 B 290 GLY LEU SER GLN ARG GLU ILE GLU GLN LEU VAL ASP THR SEQRES 17 B 290 PHE PRO LYS GLN SER ILE ASP PHE PHE SER ALA LEU ARG SEQRES 18 B 290 SER ARG ILE TYR ASP ILE GLN ILE ARG ASP PHE ILE HIS SEQRES 19 B 290 LYS VAL GLY PHE GLU ARG ILE SER LEU ARG VAL VAL ASN SEQRES 20 B 290 SER LEU GLU ALA PRO PRO GLU PHE LYS LYS PRO ASP PHE SEQRES 21 B 290 SER LEU ALA HIS LEU ILE GLU SER GLY ASN LEU VAL LEU SEQRES 22 B 290 GLY GLU GLN GLN ARG VAL ASP ASN SER GLN LEU VAL ASP SEQRES 23 B 290 GLU TYR ASN ARG HET GD A 401 1 HET GD A 402 1 HET GD A 403 1 HET CL A 404 1 HET ADP B 301 39 HET GD B 302 1 HETNAM GD GADOLINIUM ATOM HETNAM CL CHLORIDE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 GD 4(GD) FORMUL 6 CL CL 1- FORMUL 7 ADP C10 H15 N5 O10 P2 FORMUL 9 HOH *3(H2 O) HELIX 1 AA1 ALA A 6 ASN A 20 1 15 HELIX 2 AA2 GLY A 42 GLY A 55 1 14 HELIX 3 AA3 GLY A 63 GLU A 67 1 5 HELIX 4 AA4 SER A 68 GLY A 72 5 5 HELIX 5 AA5 ASP A 73 GLY A 93 1 21 HELIX 6 AA6 ALA A 107 ASP A 111 5 5 HELIX 7 AA7 ASN A 119 ASN A 133 1 15 HELIX 8 AA8 SER A 161 LEU A 163 5 3 HELIX 9 AA9 TYR A 164 ASP A 170 1 7 HELIX 10 AB1 ASN A 181 PHE A 193 1 13 HELIX 11 AB2 SER A 199 PHE A 210 1 12 HELIX 12 AB3 SER A 214 ARG A 224 1 11 HELIX 13 AB4 TYR A 226 GLY A 238 1 13 HELIX 14 AB5 ARG A 241 ASN A 248 1 8 HELIX 15 AB6 SER A 262 GLY A 275 1 14 HELIX 16 AB7 ALA B 6 LEU B 22 1 17 HELIX 17 AB8 GLY B 42 GLY B 55 1 14 HELIX 18 AB9 GLY B 63 SER B 68 1 6 HELIX 19 AC1 PRO B 69 GLY B 72 5 4 HELIX 20 AC2 ASP B 73 GLY B 93 1 21 HELIX 21 AC3 THR B 117 ASN B 133 1 17 HELIX 22 AC4 SER B 161 LEU B 163 5 3 HELIX 23 AC5 TYR B 164 ASP B 170 1 7 HELIX 24 AC6 ASN B 181 PHE B 193 1 13 HELIX 25 AC7 SER B 199 PHE B 210 1 12 HELIX 26 AC8 SER B 214 GLY B 238 1 25 HELIX 27 AC9 ARG B 241 VAL B 247 1 7 HELIX 28 AD1 SER B 262 GLU B 276 1 15 SHEET 1 AA1 5 GLU A 57 SER A 62 0 SHEET 2 AA1 5 CYS A 96 ASN A 101 1 O ASN A 101 N ILE A 61 SHEET 3 AA1 5 ILE A 153 GLY A 157 1 O ILE A 154 N ILE A 100 SHEET 4 AA1 5 ILE A 32 HIS A 36 1 N ILE A 35 O VAL A 155 SHEET 5 AA1 5 MET A 173 TYR A 177 1 O PHE A 176 N GLY A 34 SHEET 1 AA2 5 GLU B 57 SER B 62 0 SHEET 2 AA2 5 CYS B 96 ASN B 101 1 O MET B 99 N THR B 59 SHEET 3 AA2 5 ILE B 153 GLY B 157 1 O ILE B 154 N LEU B 98 SHEET 4 AA2 5 ILE B 32 HIS B 36 1 N ILE B 35 O VAL B 155 SHEET 5 AA2 5 MET B 173 TYR B 177 1 O GLU B 174 N GLY B 34 LINK NH2 ARG A 83 GD GD A 403 1555 1555 2.98 LINK OE1 GLU A 204 GD GD A 401 1555 1555 2.88 LINK OE2 GLU A 204 GD GD A 401 1555 1555 2.99 LINK GD GD A 403 NH2 ARG B 92 18444 1555 3.46 LINK NZ LYS B 39 GD GD B 302 1555 1555 3.43 LINK O2B ADP B 301 GD GD B 302 1555 1555 2.88 LINK O1A ADP B 301 GD GD B 302 1555 1555 3.21 SITE 1 AC1 1 GLU A 204 SITE 1 AC2 1 LYS A 185 SITE 1 AC3 3 ARG A 83 GLU B 57 ARG B 92 SITE 1 AC4 5 ARG A 201 PHE A 210 PRO A 211 LYS A 212 SITE 2 AC4 5 GLN A 213 SITE 1 AC5 17 ARG A 169 TYR B 3 TYR B 4 GLY B 40 SITE 2 AC5 17 GLU B 41 GLY B 42 LYS B 43 THR B 44 SITE 3 AC5 17 PHE B 45 LEU B 49 ILE B 188 ILE B 192 SITE 4 AC5 17 ILE B 215 ASP B 216 SER B 219 GD B 302 SITE 5 AC5 17 HOH B 401 SITE 1 AC6 3 LYS B 39 GLY B 40 ADP B 301 CRYST1 111.990 111.990 283.818 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008929 0.005155 0.000000 0.00000 SCALE2 0.000000 0.010311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003523 0.00000