HEADER PHOTOSYNTHESIS 13-MAY-20 6Z1J TITLE PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER SPHAEROIDES STRAIN RV TITLE 2 LSP CO-CRYSTALLIZATION WITH SPHEROIDENE COMPND MOL_ID: 1; COMPND 2 MOLECULE: REACTION CENTER PROTEIN H CHAIN; COMPND 3 CHAIN: H; COMPND 4 SYNONYM: PHOTOSYNTHETIC REACTION CENTER H SUBUNIT; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: REACTION CENTER PROTEIN L CHAIN; COMPND 8 CHAIN: L; COMPND 9 SYNONYM: PHOTOSYNTHETIC REACTION CENTER L SUBUNIT; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: REACTION CENTER PROTEIN M CHAIN; COMPND 14 CHAIN: M; COMPND 15 SYNONYM: PHOTOSYNTHETIC REACTION CENTER M SUBUNIT; COMPND 16 ENGINEERED: YES; COMPND 17 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 3 ORGANISM_TAXID: 1063; SOURCE 4 GENE: PUHA; SOURCE 5 EXPRESSION_SYSTEM: RHODOBACTER SPHAEROIDES; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1063; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 9 ORGANISM_TAXID: 1063; SOURCE 10 GENE: PUFL; SOURCE 11 EXPRESSION_SYSTEM: RHODOBACTER SPHAEROIDES; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 1063; SOURCE 13 EXPRESSION_SYSTEM_CELL_LINE: RV; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 16 ORGANISM_TAXID: 1063; SOURCE 17 GENE: PUFM; SOURCE 18 EXPRESSION_SYSTEM: RHODOBACTER SPHAEROIDES; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 1063 KEYWDS PHOTOSYNTHETIC REACTION CENTER, BACTERIOCHLOROPHYLL, RHODOBACTER KEYWDS 2 SPHAEROIDES, SERIAL CRYSTALLOGRAPHY, MESOPHASE CRYSTALLIZATION, KEYWDS 3 LIPID SPONGE PHASE, LIPID CUBIC PHASE, SPHEROIDENE, UBIQUINONE, KEYWDS 4 PHOTOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR A.G.GABDULKHAKOV,T.Y.FUFINA,L.G.VASILIEVA,C.BETZEL,G.K.SELIKHANOV REVDAT 2 24-JAN-24 6Z1J 1 HETSYN REVDAT 1 02-DEC-20 6Z1J 0 JRNL AUTH G.SELIKHANOV,T.FUFINA,L.VASILIEVA,C.BETZEL,A.GABDULKHAKOV JRNL TITL NOVEL APPROACHES FOR THE LIPID SPONGE PHASE CRYSTALLIZATION JRNL TITL 2 OF THE RHODOBACTER SPHAEROIDES PHOTOSYNTHETIC REACTION JRNL TITL 3 CENTER. JRNL REF IUCRJ V. 7 1084 2020 JRNL REFN ESSN 2052-2525 JRNL PMID 33209319 JRNL DOI 10.1107/S2052252520012142 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18_3861 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 71316 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3567 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0700 - 6.1400 1.00 2998 158 0.1939 0.2073 REMARK 3 2 6.1400 - 4.8700 1.00 2811 148 0.1887 0.2135 REMARK 3 3 4.8700 - 4.2600 1.00 2780 147 0.1670 0.1965 REMARK 3 4 4.2600 - 3.8700 1.00 2755 145 0.1660 0.1954 REMARK 3 5 3.8700 - 3.5900 1.00 2729 143 0.1673 0.1946 REMARK 3 6 3.5900 - 3.3800 1.00 2733 144 0.1678 0.2179 REMARK 3 7 3.3800 - 3.2100 1.00 2720 143 0.1732 0.1862 REMARK 3 8 3.2100 - 3.0700 1.00 2711 143 0.1837 0.2309 REMARK 3 9 3.0700 - 2.9500 1.00 2699 142 0.1826 0.2338 REMARK 3 10 2.9500 - 2.8500 1.00 2695 142 0.1742 0.2086 REMARK 3 11 2.8500 - 2.7600 1.00 2701 142 0.1771 0.2284 REMARK 3 12 2.7600 - 2.6800 1.00 2695 142 0.1838 0.2431 REMARK 3 13 2.6800 - 2.6100 1.00 2674 141 0.1923 0.2644 REMARK 3 14 2.6100 - 2.5500 1.00 2696 141 0.1950 0.2464 REMARK 3 15 2.5500 - 2.4900 1.00 2676 141 0.2027 0.2703 REMARK 3 16 2.4900 - 2.4400 1.00 2649 140 0.1991 0.2684 REMARK 3 17 2.4400 - 2.3900 1.00 2689 141 0.2147 0.2768 REMARK 3 18 2.3900 - 2.3400 1.00 2686 142 0.2171 0.2567 REMARK 3 19 2.3400 - 2.3000 1.00 2656 140 0.2152 0.2783 REMARK 3 20 2.3000 - 2.2600 1.00 2685 141 0.2225 0.2716 REMARK 3 21 2.2600 - 2.2300 1.00 2644 139 0.2294 0.2793 REMARK 3 22 2.2300 - 2.1900 1.00 2674 141 0.2354 0.2732 REMARK 3 23 2.1900 - 2.1600 1.00 2674 140 0.2623 0.2957 REMARK 3 24 2.1600 - 2.1300 1.00 2639 139 0.2635 0.3210 REMARK 3 25 2.1300 - 2.1000 1.00 2680 142 0.2932 0.3111 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.378 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7739 REMARK 3 ANGLE : 0.884 10588 REMARK 3 CHIRALITY : 0.050 1057 REMARK 3 PLANARITY : 0.006 1301 REMARK 3 DIHEDRAL : 17.741 2735 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Z1J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108699. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71322 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.91 REMARK 200 R MERGE (I) : 0.19000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3V3Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1-MONO-OLEYL-RAC-GLYCEROL (MO), 1,2,3 REMARK 280 -HEPTANETRIOL, JEFFAMINE M600, N,N-DIMETHYLDODECYLAMINE-N-OXIDE REMARK 280 (LDAO), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.94500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.94500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 119.26000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.94500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.94500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 119.26000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.94500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.94500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 119.26000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.94500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.94500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 119.26000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 37380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -203.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY M 302 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 11 -165.80 -100.13 REMARK 500 ASP H 11 -163.45 -102.59 REMARK 500 ALA H 116 63.95 -69.71 REMARK 500 ASP H 119 48.39 -83.43 REMARK 500 GLN H 174 67.90 36.34 REMARK 500 VAL L 31 -88.80 -97.31 REMARK 500 LEU L 133 -63.74 -132.64 REMARK 500 ASN L 274 59.92 -118.98 REMARK 500 GLU M 22 -115.43 40.50 REMARK 500 LEU M 52 -100.08 -93.22 REMARK 500 PHE M 162 -63.85 -139.52 REMARK 500 ASN M 195 101.46 77.41 REMARK 500 ASP M 240 78.86 -154.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 U10 M 405 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE M 404 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS L 190 NE2 REMARK 620 2 HIS L 230 NE2 88.5 REMARK 620 3 HIS M 219 NE2 118.1 96.2 REMARK 620 4 GLU M 234 OE1 96.2 82.7 145.7 REMARK 620 5 GLU M 234 OE2 152.9 89.4 89.0 56.8 REMARK 620 6 HIS M 266 NE2 91.3 166.9 95.5 84.3 84.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCL L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCL L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BPH L 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC L 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCL M 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCL M 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BPH M 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE M 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U10 M 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SPN M 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA M 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA M 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LDA M 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 M 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NKP M 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NKP M 415 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6Z02 RELATED DB: PDB DBREF 6Z1J H 10 250 UNP P0C0Y7 RCEH_RHOSH 10 250 DBREF 6Z1J L 1 281 UNP P0C0Y8 RCEL_RHOSH 2 282 DBREF 6Z1J M 1 302 UNP P0C0Y9 RCEM_RHOSH 2 303 SEQADV 6Z1J THR L 178 UNP P0C0Y8 SER 179 CONFLICT SEQADV 6Z1J THR M 8 UNP P0C0Y9 SER 9 CONFLICT SEQRES 1 H 241 PHE ASP LEU ALA SER LEU ALA ILE TYR SER PHE TRP ILE SEQRES 2 H 241 PHE LEU ALA GLY LEU ILE TYR TYR LEU GLN THR GLU ASN SEQRES 3 H 241 MET ARG GLU GLY TYR PRO LEU GLU ASN GLU ASP GLY THR SEQRES 4 H 241 PRO ALA ALA ASN GLN GLY PRO PHE PRO LEU PRO LYS PRO SEQRES 5 H 241 LYS THR PHE ILE LEU PRO HIS GLY ARG GLY THR LEU THR SEQRES 6 H 241 VAL PRO GLY PRO GLU SER GLU ASP ARG PRO ILE ALA LEU SEQRES 7 H 241 ALA ARG THR ALA VAL SER GLU GLY PHE PRO HIS ALA PRO SEQRES 8 H 241 THR GLY ASP PRO MET LYS ASP GLY VAL GLY PRO ALA SER SEQRES 9 H 241 TRP VAL ALA ARG ARG ASP LEU PRO GLU LEU ASP GLY HIS SEQRES 10 H 241 GLY HIS ASN LYS ILE LYS PRO MET LYS ALA ALA ALA GLY SEQRES 11 H 241 PHE HIS VAL SER ALA GLY LYS ASN PRO ILE GLY LEU PRO SEQRES 12 H 241 VAL ARG GLY CYS ASP LEU GLU ILE ALA GLY LYS VAL VAL SEQRES 13 H 241 ASP ILE TRP VAL ASP ILE PRO GLU GLN MET ALA ARG PHE SEQRES 14 H 241 LEU GLU VAL GLU LEU LYS ASP GLY SER THR ARG LEU LEU SEQRES 15 H 241 PRO MET GLN MET VAL LYS VAL GLN SER ASN ARG VAL HIS SEQRES 16 H 241 VAL ASN ALA LEU SER SER ASP LEU PHE ALA GLY ILE PRO SEQRES 17 H 241 THR ILE LYS SER PRO THR GLU VAL THR LEU LEU GLU GLU SEQRES 18 H 241 ASP LYS ILE CYS GLY TYR VAL ALA GLY GLY LEU MET TYR SEQRES 19 H 241 ALA ALA PRO LYS ARG LYS SER SEQRES 1 L 281 ALA LEU LEU SER PHE GLU ARG LYS TYR ARG VAL PRO GLY SEQRES 2 L 281 GLY THR LEU VAL GLY GLY ASN LEU PHE ASP PHE TRP VAL SEQRES 3 L 281 GLY PRO PHE TYR VAL GLY PHE PHE GLY VAL ALA THR PHE SEQRES 4 L 281 PHE PHE ALA ALA LEU GLY ILE ILE LEU ILE ALA TRP SER SEQRES 5 L 281 ALA VAL LEU GLN GLY THR TRP ASN PRO GLN LEU ILE SER SEQRES 6 L 281 VAL TYR PRO PRO ALA LEU GLU TYR GLY LEU GLY GLY ALA SEQRES 7 L 281 PRO LEU ALA LYS GLY GLY LEU TRP GLN ILE ILE THR ILE SEQRES 8 L 281 CYS ALA THR GLY ALA PHE VAL SER TRP ALA LEU ARG GLU SEQRES 9 L 281 VAL GLU ILE CYS ARG LYS LEU GLY ILE GLY TYR HIS ILE SEQRES 10 L 281 PRO PHE ALA PHE ALA PHE ALA ILE LEU ALA TYR LEU THR SEQRES 11 L 281 LEU VAL LEU PHE ARG PRO VAL MET MET GLY ALA TRP GLY SEQRES 12 L 281 TYR ALA PHE PRO TYR GLY ILE TRP THR HIS LEU ASP TRP SEQRES 13 L 281 VAL SER ASN THR GLY TYR THR TYR GLY ASN PHE HIS TYR SEQRES 14 L 281 ASN PRO ALA HIS MET ILE ALA ILE THR PHE PHE PHE THR SEQRES 15 L 281 ASN ALA LEU ALA LEU ALA LEU HIS GLY ALA LEU VAL LEU SEQRES 16 L 281 SER ALA ALA ASN PRO GLU LYS GLY LYS GLU MET ARG THR SEQRES 17 L 281 PRO ASP HIS GLU ASP THR PHE PHE ARG ASP LEU VAL GLY SEQRES 18 L 281 TYR SER ILE GLY THR LEU GLY ILE HIS ARG LEU GLY LEU SEQRES 19 L 281 LEU LEU SER LEU SER ALA VAL PHE PHE SER ALA LEU CYS SEQRES 20 L 281 MET ILE ILE THR GLY THR ILE TRP PHE ASP GLN TRP VAL SEQRES 21 L 281 ASP TRP TRP GLN TRP TRP VAL LYS LEU PRO TRP TRP ALA SEQRES 22 L 281 ASN ILE PRO GLY GLY ILE ASN GLY SEQRES 1 M 302 ALA GLU TYR GLN ASN ILE PHE THR GLN VAL GLN VAL ARG SEQRES 2 M 302 GLY PRO ALA ASP LEU GLY MET THR GLU ASP VAL ASN LEU SEQRES 3 M 302 ALA ASN ARG SER GLY VAL GLY PRO PHE SER THR LEU LEU SEQRES 4 M 302 GLY TRP PHE GLY ASN ALA GLN LEU GLY PRO ILE TYR LEU SEQRES 5 M 302 GLY SER LEU GLY VAL LEU SER LEU PHE SER GLY LEU MET SEQRES 6 M 302 TRP PHE PHE THR ILE GLY ILE TRP PHE TRP TYR GLN ALA SEQRES 7 M 302 GLY TRP ASN PRO ALA VAL PHE LEU ARG ASP LEU PHE PHE SEQRES 8 M 302 PHE SER LEU GLU PRO PRO ALA PRO GLU TYR GLY LEU SER SEQRES 9 M 302 PHE ALA ALA PRO LEU LYS GLU GLY GLY LEU TRP LEU ILE SEQRES 10 M 302 ALA SER PHE PHE MET PHE VAL ALA VAL TRP SER TRP TRP SEQRES 11 M 302 GLY ARG THR TYR LEU ARG ALA GLN ALA LEU GLY MET GLY SEQRES 12 M 302 LYS HIS THR ALA TRP ALA PHE LEU SER ALA ILE TRP LEU SEQRES 13 M 302 TRP MET VAL LEU GLY PHE ILE ARG PRO ILE LEU MET GLY SEQRES 14 M 302 SER TRP SER GLU ALA VAL PRO TYR GLY ILE PHE SER HIS SEQRES 15 M 302 LEU ASP TRP THR ASN ASN PHE SER LEU VAL HIS GLY ASN SEQRES 16 M 302 LEU PHE TYR ASN PRO PHE HIS GLY LEU SER ILE ALA PHE SEQRES 17 M 302 LEU TYR GLY SER ALA LEU LEU PHE ALA MET HIS GLY ALA SEQRES 18 M 302 THR ILE LEU ALA VAL SER ARG PHE GLY GLY GLU ARG GLU SEQRES 19 M 302 LEU GLU GLN ILE ALA ASP ARG GLY THR ALA ALA GLU ARG SEQRES 20 M 302 ALA ALA LEU PHE TRP ARG TRP THR MET GLY PHE ASN ALA SEQRES 21 M 302 THR MET GLU GLY ILE HIS ARG TRP ALA ILE TRP MET ALA SEQRES 22 M 302 VAL LEU VAL THR LEU THR GLY GLY ILE GLY ILE LEU LEU SEQRES 23 M 302 SER GLY THR VAL VAL ASP ASN TRP TYR VAL TRP GLY GLN SEQRES 24 M 302 ASN HIS GLY HET LDA H 301 16 HET BCL L 301 66 HET BCL L 302 66 HET BPH L 303 65 HET UNL L 304 12 HET UNL L 305 15 HET OLC L 306 25 HET BCL M 401 66 HET BCL M 402 66 HET BPH M 403 65 HET FE M 404 1 HET U10 M 405 48 HET SPN M 406 43 HET LDA M 407 16 HET LDA M 408 16 HET LDA M 409 16 HET UNL M 410 12 HET UNL M 411 12 HET UNL M 412 12 HET PO4 M 413 5 HET NKP M 414 29 HET NKP M 415 29 HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE HETNAM BCL BACTERIOCHLOROPHYLL A HETNAM BPH BACTERIOPHEOPHYTIN A HETNAM UNL UNKNOWN LIGAND HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM FE FE (III) ION HETNAM U10 UBIQUINONE-10 HETNAM SPN SPEROIDENONE HETNAM PO4 PHOSPHATE ION HETNAM NKP (2R)-2-HYDROXY-3-(PHOSPHONOOXY)PROPYL (9E)-OCTADEC-9- HETNAM 2 NKP ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL HETSYN U10 COENZYME Q10 HETSYN NKP 18:1 LPA; OLEOYL LYSOPHOSPHATIDIC ACID FORMUL 4 LDA 4(C14 H31 N O) FORMUL 5 BCL 4(C55 H74 MG N4 O6) FORMUL 7 BPH 2(C55 H76 N4 O6) FORMUL 10 OLC C21 H40 O4 FORMUL 14 FE FE 3+ FORMUL 15 U10 C59 H90 O4 FORMUL 16 SPN C41 H70 O2 FORMUL 23 PO4 O4 P 3- FORMUL 24 NKP 2(C21 H41 O7 P) FORMUL 26 HOH *185(H2 O) HELIX 1 AA1 ASP H 11 ASN H 35 1 25 HELIX 2 AA2 ASP H 103 GLY H 108 1 6 HELIX 3 AA3 VAL H 109 SER H 113 5 5 HELIX 4 AA4 LYS H 135 ALA H 137 5 3 HELIX 5 AA5 GLN H 194 VAL H 196 5 3 HELIX 6 AA6 SER H 209 PHE H 213 5 5 HELIX 7 AA7 THR H 226 ALA H 244 1 19 HELIX 8 AA8 ALA H 245 ARG H 248 5 4 HELIX 9 AA9 GLU L 6 ARG L 10 5 5 HELIX 10 AB1 VAL L 31 GLY L 57 1 27 HELIX 11 AB2 ALA L 70 GLY L 74 5 5 HELIX 12 AB3 PRO L 79 LYS L 82 5 4 HELIX 13 AB4 GLY L 83 GLY L 112 1 30 HELIX 14 AB5 TYR L 115 LEU L 133 1 19 HELIX 15 AB6 LEU L 133 GLY L 140 1 8 HELIX 16 AB7 ALA L 141 ALA L 145 5 5 HELIX 17 AB8 TRP L 151 THR L 163 1 13 HELIX 18 AB9 TYR L 164 GLY L 165 5 2 HELIX 19 AC1 ASN L 166 TYR L 169 5 4 HELIX 20 AC2 ASN L 170 ASN L 199 1 30 HELIX 21 AC3 THR L 208 GLY L 221 1 14 HELIX 22 AC4 GLY L 225 ILE L 250 1 26 HELIX 23 AC5 GLN L 258 TRP L 262 5 5 HELIX 24 AC6 TRP L 263 LYS L 268 1 6 HELIX 25 AC7 ASN M 25 ARG M 29 5 5 HELIX 26 AC8 SER M 36 TRP M 41 1 6 HELIX 27 AC9 GLY M 53 ALA M 78 1 26 HELIX 28 AD1 ASN M 81 LEU M 89 1 9 HELIX 29 AD2 ALA M 98 GLY M 102 5 5 HELIX 30 AD3 PRO M 108 GLU M 111 5 4 HELIX 31 AD4 GLY M 112 LEU M 140 1 29 HELIX 32 AD5 LYS M 144 PHE M 162 1 19 HELIX 33 AD6 PHE M 162 GLY M 169 1 8 HELIX 34 AD7 SER M 170 ALA M 174 5 5 HELIX 35 AD8 GLY M 178 HIS M 193 1 16 HELIX 36 AD9 ASN M 195 TYR M 198 5 4 HELIX 37 AE1 ASN M 199 VAL M 226 1 28 HELIX 38 AE2 SER M 227 GLY M 230 5 4 HELIX 39 AE3 ARG M 233 ASP M 240 1 8 HELIX 40 AE4 GLY M 242 GLY M 257 1 16 HELIX 41 AE5 GLU M 263 LEU M 286 1 24 HELIX 42 AE6 ASN M 293 HIS M 301 1 9 SHEET 1 AA1 2 LYS H 62 LEU H 66 0 SHEET 2 AA1 2 GLY H 71 VAL H 75 -1 O GLY H 71 N LEU H 66 SHEET 1 AA2 2 LEU H 87 ARG H 89 0 SHEET 2 AA2 2 HIS H 98 PRO H 100 -1 O ALA H 99 N ALA H 88 SHEET 1 AA3 4 ILE H 131 PRO H 133 0 SHEET 2 AA3 4 ILE H 160 ASP H 170 -1 O VAL H 169 N LYS H 132 SHEET 3 AA3 4 MET H 175 GLU H 182 -1 O GLU H 182 N LYS H 163 SHEET 4 AA3 4 THR H 188 PRO H 192 -1 O ARG H 189 N VAL H 181 SHEET 1 AA4 5 ILE H 131 PRO H 133 0 SHEET 2 AA4 5 ILE H 160 ASP H 170 -1 O VAL H 169 N LYS H 132 SHEET 3 AA4 5 PRO H 152 GLY H 155 -1 N VAL H 153 O ALA H 161 SHEET 4 AA4 5 VAL H 203 VAL H 205 1 O VAL H 203 N ARG H 154 SHEET 5 AA4 5 LYS H 197 VAL H 198 -1 N LYS H 197 O HIS H 204 SHEET 1 AA5 2 HIS H 141 ALA H 144 0 SHEET 2 AA5 2 GLN M 11 ARG M 13 -1 O GLN M 11 N SER H 143 SHEET 1 AA6 2 TRP L 25 VAL L 26 0 SHEET 2 AA6 2 PHE L 29 TYR L 30 -1 O PHE L 29 N VAL L 26 SHEET 1 AA7 2 SER L 65 VAL L 66 0 SHEET 2 AA7 2 TYR L 148 GLY L 149 -1 O TYR L 148 N VAL L 66 LINK NE2 HIS L 190 FE FE M 404 1555 1555 2.21 LINK NE2 HIS L 230 FE FE M 404 1555 1555 2.29 LINK NE2 HIS M 219 FE FE M 404 1555 1555 2.17 LINK OE1 GLU M 234 FE FE M 404 1555 1555 2.41 LINK OE2 GLU M 234 FE FE M 404 1555 1555 2.22 LINK NE2 HIS M 266 FE FE M 404 1555 1555 2.26 CISPEP 1 TYR H 40 PRO H 41 0 2.79 CISPEP 2 VAL H 75 PRO H 76 0 -3.80 CISPEP 3 GLY M 48 PRO M 49 0 -7.56 SITE 1 AC1 4 GLN H 32 TYR H 40 ARG M 253 GLY M 257 SITE 1 AC2 15 HIS L 168 MET L 174 ILE L 177 THR L 178 SITE 2 AC2 15 PHE L 181 THR L 182 HOH L 425 MET M 122 SITE 3 AC2 15 TRP M 157 HIS M 182 LEU M 183 THR M 186 SITE 4 AC2 15 BCL M 401 BPH M 403 SPN M 406 SITE 1 AC3 21 ALA L 124 ILE L 125 ALA L 127 LEU L 131 SITE 2 AC3 21 TRP L 156 VAL L 157 THR L 160 TYR L 162 SITE 3 AC3 21 ASN L 166 HIS L 168 HIS L 173 ALA L 176 SITE 4 AC3 21 ILE L 177 PHE L 180 SER L 244 CYS L 247 SITE 5 AC3 21 MET L 248 BPH L 303 TYR M 210 BCL M 401 SITE 6 AC3 21 BCL M 402 SITE 1 AC4 17 PHE L 97 TRP L 100 GLU L 104 ILE L 117 SITE 2 AC4 17 PHE L 121 ALA L 124 TYR L 148 GLY L 149 SITE 3 AC4 17 HIS L 153 VAL L 241 BCL L 302 TYR M 210 SITE 4 AC4 17 ALA M 213 LEU M 214 TRP M 252 MET M 256 SITE 5 AC4 17 BCL M 402 SITE 1 AC5 12 HIS L 190 LEU L 193 ASP L 213 PHE L 216 SITE 2 AC5 12 VAL L 220 SER L 223 ILE L 224 GLY L 225 SITE 3 AC5 12 THR L 226 ILE L 229 HOH L 410 HOH L 443 SITE 1 AC6 20 VAL L 157 TYR L 162 PHE L 181 BCL L 301 SITE 2 AC6 20 BCL L 302 ALA M 153 LEU M 160 THR M 186 SITE 3 AC6 20 ASN M 187 SER M 190 LEU M 196 PHE M 197 SITE 4 AC6 20 HIS M 202 SER M 205 ILE M 206 TYR M 210 SITE 5 AC6 20 VAL M 276 GLY M 280 ILE M 284 BPH M 403 SITE 1 AC7 17 TYR L 128 PHE L 146 ILE L 150 HIS L 153 SITE 2 AC7 17 LEU L 154 BCL L 302 BPH L 303 PHE M 197 SITE 3 AC7 17 GLY M 203 ILE M 206 ALA M 207 TYR M 210 SITE 4 AC7 17 GLY M 211 LEU M 214 U10 M 405 LDA M 407 SITE 5 AC7 17 HOH M 531 SITE 1 AC8 17 PHE L 181 ALA L 184 LEU L 185 LEU L 189 SITE 2 AC8 17 LEU L 219 BCL L 301 SER M 59 GLY M 63 SITE 3 AC8 17 LEU M 64 VAL M 126 TRP M 129 THR M 146 SITE 4 AC8 17 PHE M 150 ALA M 153 ALA M 273 THR M 277 SITE 5 AC8 17 BCL M 401 SITE 1 AC9 5 HIS L 190 HIS L 230 HIS M 219 GLU M 234 SITE 2 AC9 5 HIS M 266 SITE 1 AD1 15 GLY L 35 THR L 38 ARG L 103 MET M 218 SITE 2 AD1 15 HIS M 219 THR M 222 ALA M 248 ALA M 249 SITE 3 AD1 15 TRP M 252 MET M 256 ASN M 259 ALA M 260 SITE 4 AD1 15 ILE M 265 TRP M 268 BCL M 402 SITE 1 AD2 17 BCL L 301 PHE M 67 PHE M 68 ILE M 70 SITE 2 AD2 17 GLY M 71 TRP M 75 SER M 119 PHE M 120 SITE 3 AD2 17 TRP M 157 GLY M 161 PHE M 162 TRP M 171 SITE 4 AD2 17 VAL M 175 TYR M 177 ILE M 179 HIS M 182 SITE 5 AD2 17 HOH M 537 SITE 1 AD3 4 TRP H 21 ALA M 207 MET M 272 BCL M 402 SITE 1 AD4 3 PHE M 7 LEU M 38 TRP M 41 SITE 1 AD5 3 PHE M 105 ALA M 106 ALA M 107 SITE 1 AD6 5 TYR M 3 GLN M 4 ASN M 5 ILE M 6 SITE 2 AD6 5 PHE M 7 SITE 1 AD7 11 LYS L 202 GLY M 143 LYS M 144 HIS M 145 SITE 2 AD7 11 TRP M 148 LEU M 151 TRP M 155 VAL M 274 SITE 3 AD7 11 LEU M 278 NKP M 415 HOH M 512 SITE 1 AD8 7 ILE H 22 TYR H 30 ASN L 199 LYS L 202 SITE 2 AD8 7 HIS M 145 ARG M 267 NKP M 414 CRYST1 99.890 99.890 238.520 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010011 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010011 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004193 0.00000