HEADER OXIDOREDUCTASE 14-MAY-20 6Z1S TITLE STRUCTURE OF POLYPHENOL OXIDASE (MUTANT G292N) FROM THERMOTHELOMYCES TITLE 2 THERMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINASE-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTHELOMYCES THERMOPHILUS ATCC 42464; SOURCE 3 ORGANISM_TAXID: 573729; SOURCE 4 GENE: MYCTH_60685; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS POLYPHENOL OXIDASE, MELANIN SYNTHESIS, DICOPPER CENTER, KEYWDS 2 EXTRACELLULAR, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.DIMAROGONA,E.NIKOLAIVITS,A.VALMAS,E.TOPAKAS REVDAT 3 24-JAN-24 6Z1S 1 REMARK REVDAT 2 06-OCT-21 6Z1S 1 JRNL REVDAT 1 24-MAR-21 6Z1S 0 JRNL AUTH E.NIKOLAIVITS,A.VALMAS,G.DEDES,E.TOPAKAS,M.DIMAROGONA JRNL TITL CONSIDERATIONS REGARDING ACTIVITY DETERMINANTS OF FUNGAL JRNL TITL 2 POLYPHENOL OXIDASES BASED ON MUTATIONAL AND STRUCTURAL JRNL TITL 3 STUDIES. JRNL REF APPL.ENVIRON.MICROBIOL. V. 87 2021 JRNL REFN ESSN 1098-5336 JRNL PMID 33741634 JRNL DOI 10.1128/AEM.00396-21 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 49.7 REMARK 3 NUMBER OF REFLECTIONS : 28590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1478 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.53 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 1.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.3800 REMARK 3 BIN FREE R VALUE SET COUNT : 5 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2964 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 359 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.31000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.062 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3173 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2817 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4328 ; 1.679 ; 1.690 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6545 ; 1.368 ; 1.609 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 383 ; 6.678 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;31.209 ;21.506 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 441 ;13.766 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;21.799 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 396 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3613 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 688 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1553 ; 1.848 ; 2.057 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1551 ; 1.822 ; 2.054 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1926 ; 2.800 ; 3.035 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1926 ; 2.801 ; 3.035 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1620 ; 2.315 ; 2.280 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1620 ; 2.315 ; 2.280 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2401 ; 3.678 ; 3.345 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3784 ; 5.550 ;24.656 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3694 ; 5.445 ;24.203 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6Z1S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108566. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98012 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC 1.1.7 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30047 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 43.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.72 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 4J3Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOPRHEUS BUFFER 3, AMINO ACIDS MIX, REMARK 280 MPD, PEG1000, PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.20200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.58850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.20200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.58850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 PHE A 2 REMARK 465 ARG A 3 REMARK 465 CYS A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 ASP A 7 REMARK 465 ALA A 8 REMARK 465 PRO A 9 REMARK 465 PRO A 10 REMARK 465 PRO A 11 REMARK 465 ALA A 12 REMARK 465 PRO A 13 REMARK 465 VAL A 14 REMARK 465 GLY A 50 REMARK 465 GLU A 51 REMARK 465 ALA A 52 REMARK 465 GLY A 192 REMARK 465 VAL A 193 REMARK 465 SER A 194 REMARK 465 GLY A 195 REMARK 465 ALA A 338 REMARK 465 ASP A 339 REMARK 465 GLY A 340 REMARK 465 GLN A 406 REMARK 465 LYS A 407 REMARK 465 LEU A 408 REMARK 465 ILE A 409 REMARK 465 SER A 410 REMARK 465 GLU A 411 REMARK 465 GLU A 412 REMARK 465 ASP A 413 REMARK 465 LEU A 414 REMARK 465 ASN A 415 REMARK 465 SER A 416 REMARK 465 ALA A 417 REMARK 465 VAL A 418 REMARK 465 ASP A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 145 O HOH A 602 1.93 REMARK 500 OD2 ASP A 116 O HOH A 603 1.99 REMARK 500 OXT GLY A 510 O HOH A 604 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 159 74.18 -165.61 REMARK 500 LEU A 173 30.80 -88.73 REMARK 500 ASN A 241 55.21 -143.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 959 DISTANCE = 6.09 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLY A 506 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 514 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 110 NE2 REMARK 620 2 HIS A 118 NE2 103.4 REMARK 620 3 HIS A 127 NE2 118.1 110.2 REMARK 620 4 HOH A 870 O 115.2 98.0 109.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 513 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 291 NE2 REMARK 620 2 HIS A 295 NE2 93.6 REMARK 620 3 HIS A 319 NE2 102.5 108.1 REMARK 620 4 HOH A 870 O 125.2 116.8 108.6 REMARK 620 N 1 2 3 DBREF 6Z1S A 3 404 UNP G2QLD3 G2QLD3_MYCTT 23 424 SEQADV 6Z1S GLU A 1 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S PHE A 2 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S ASN A 292 UNP G2QLD3 GLY 312 ENGINEERED MUTATION SEQADV 6Z1S GLU A 405 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S GLN A 406 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S LYS A 407 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S LEU A 408 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S ILE A 409 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S SER A 410 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S GLU A 411 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S GLU A 412 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S ASP A 413 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S LEU A 414 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S ASN A 415 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S SER A 416 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S ALA A 417 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S VAL A 418 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S ASP A 419 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S HIS A 420 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S HIS A 421 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S HIS A 422 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S HIS A 423 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S HIS A 424 UNP G2QLD3 EXPRESSION TAG SEQADV 6Z1S HIS A 425 UNP G2QLD3 EXPRESSION TAG SEQRES 1 A 425 GLU PHE ARG CYS SER SER ASP ALA PRO PRO PRO ALA PRO SEQRES 2 A 425 VAL GLY ASP ASP LEU THR GLU PRO LYS GLU LEU THR ASP SEQRES 3 A 425 LEU PHE GLU LYS ALA LYS LYS ALA VAL ILE ASP ARG LEU SEQRES 4 A 425 HIS GLU ASP GLU LYS ALA LEU ARG ALA ARG GLY GLU ALA SEQRES 5 A 425 PRO ARG CYS THR ALA ASP LYS LEU ILE PHE ARG ARG GLU SEQRES 6 A 425 TYR GLY SER LEU SER LYS ASP GLU ARG LEU ALA TYR VAL SEQRES 7 A 425 ASN ALA VAL LYS CYS LEU GLN SER LYS PRO PRO ARG THR SEQRES 8 A 425 PRO ALA SER VAL ALA PRO GLY ALA ARG SER ARG PHE ASP SEQRES 9 A 425 ASP PHE VAL VAL VAL HIS ILE GLN GLN THR LEU ASP ILE SEQRES 10 A 425 HIS TYR SER GLY ILE PHE GLN ALA TRP HIS ARG TRP PHE SEQRES 11 A 425 VAL TYR GLN TYR GLU LYS ALA LEU ARG ASP GLU CYS GLY SEQRES 12 A 425 TYR THR GLY TYR GLN PRO TYR TRP ASP TRP PRO LYS TYR SEQRES 13 A 425 ALA SER ALA PRO GLN ASP SER PRO LEU PHE ASN GLY ASP SEQRES 14 A 425 PRO TYR SER LEU GLY GLY ASN GLY GLU TYR VAL PRO HIS SEQRES 15 A 425 ASP GLY PRO VAL ILE VAL PRO PRO GLU GLY VAL SER GLY SEQRES 16 A 425 GLY ASN ILE SER LEU PRO ALA GLY VAL GLY GLY GLY PHE SEQRES 17 A 425 VAL ARG THR GLY PRO PHE ALA ASN MET THR VAL ASN LEU SEQRES 18 A 425 GLY PRO VAL GLY GLY LEU ALA ASP THR ALA PRO GLY PRO SEQRES 19 A 425 GLN GLY GLY LEU GLY TYR ASN PRO ARG GLY LEU LYS ARG SEQRES 20 A 425 ASP LEU GLY GLY ALA MET ASN THR ARG TYR ALA ASN TYR SEQRES 21 A 425 THR THR VAL LEU ARG LEU LEU THR GLN PRO ASP VAL ASP SEQRES 22 A 425 ALA PHE ARG THR VAL SER GLU GLY VAL PRO TYR THR VAL SEQRES 23 A 425 GLU ILE GLY PRO HIS ASN GLY ILE HIS TYR THR ILE GLY SEQRES 24 A 425 GLY ASP PRO GLY GLY ASP LEU PHE THR SER PRO GLY ASP SEQRES 25 A 425 PRO ALA PHE TRP VAL HIS HIS ALA GLN MET ASP ARG VAL SEQRES 26 A 425 TRP ALA THR TRP GLN ALA LEU GLY LEU LEU PRO PRO ALA SEQRES 27 A 425 ASP GLY GLY ASP PRO ASP PRO ALA ARG ARG TYR THR ASP SEQRES 28 A 425 LEU GLY LYS GLY ASP TYR ALA HIS ARG THR TRP GLN ASN SEQRES 29 A 425 SER PRO PRO SER PRO PHE ALA GLU LEU SER ASP VAL ILE SEQRES 30 A 425 ASP MET GLY TYR ALA ALA PRO SER THR THR ILE GLY ALA SEQRES 31 A 425 VAL MET SER THR THR GLU GLY GLU LEU CYS TYR PHE TYR SEQRES 32 A 425 LEU GLU GLN LYS LEU ILE SER GLU GLU ASP LEU ASN SER SEQRES 33 A 425 ALA VAL ASP HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET NAG A 501 14 HET MPD A 504 8 HET NAG A 505 14 HET GLY A 506 4 HET SER A 507 7 HET GLY A 508 5 HET GLY A 509 5 HET GLY A 510 5 HET GLY A 511 5 HET GLY A 512 5 HET CU A 513 1 HET CU A 514 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM GLY GLYCINE HETNAM SER SERINE HETNAM CU COPPER (II) ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 4 MPD C6 H14 O2 FORMUL 6 GLY 6(C2 H5 N O2) FORMUL 7 SER C3 H7 N O3 FORMUL 13 CU 2(CU 2+) FORMUL 15 HOH *359(H2 O) HELIX 1 AA1 PRO A 21 ARG A 49 1 29 HELIX 2 AA2 GLU A 65 LEU A 69 5 5 HELIX 3 AA3 SER A 70 GLN A 85 1 16 HELIX 4 AA4 SER A 101 HIS A 118 1 18 HELIX 5 AA5 ILE A 122 GLU A 141 1 20 HELIX 6 AA6 ASP A 152 ALA A 157 5 6 HELIX 7 AA7 ALA A 159 SER A 163 5 5 HELIX 8 AA8 GLY A 233 LEU A 238 5 6 HELIX 9 AA9 GLY A 250 ALA A 258 1 9 HELIX 10 AB1 ASN A 259 THR A 268 1 10 HELIX 11 AB2 ASP A 271 GLY A 281 1 11 HELIX 12 AB3 ILE A 288 GLY A 299 1 12 HELIX 13 AB4 THR A 308 ASP A 312 5 5 HELIX 14 AB5 PRO A 313 GLY A 333 1 21 HELIX 15 AB6 ALA A 346 THR A 350 5 5 HELIX 16 AB7 THR A 361 SER A 365 5 5 HELIX 17 AB8 GLY A 389 MET A 392 5 4 SHEET 1 AA1 2 ILE A 61 ARG A 63 0 SHEET 2 AA1 2 TYR A 401 TYR A 403 1 O PHE A 402 N ARG A 63 SHEET 1 AA2 2 GLY A 177 TYR A 179 0 SHEET 2 AA2 2 GLY A 206 VAL A 209 -1 O GLY A 207 N GLU A 178 SHEET 1 AA3 2 VAL A 186 ILE A 187 0 SHEET 2 AA3 2 ILE A 198 SER A 199 -1 O ILE A 198 N ILE A 187 SHEET 1 AA4 2 THR A 218 VAL A 219 0 SHEET 2 AA4 2 ARG A 243 GLY A 244 -1 O ARG A 243 N VAL A 219 SHEET 1 AA5 2 VAL A 376 ILE A 377 0 SHEET 2 AA5 2 THR A 386 THR A 387 -1 O THR A 386 N ILE A 377 SSBOND 1 CYS A 55 CYS A 400 1555 1555 2.05 SSBOND 2 CYS A 83 CYS A 142 1555 1555 2.10 LINK ND2 ASN A 197 C1 NAG A 505 1555 1555 1.44 LINK ND2 ASN A 216 C1 NAG A 501 1555 1555 1.43 LINK ND2 ASN A 259 C1 NAG B 1 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.40 LINK NE2 HIS A 110 CU CU A 514 1555 1555 2.08 LINK NE2 HIS A 118 CU CU A 514 1555 1555 2.19 LINK NE2 HIS A 127 CU CU A 514 1555 1555 2.08 LINK NE2 HIS A 291 CU CU A 513 1555 1555 2.17 LINK NE2 HIS A 295 CU CU A 513 1555 1555 2.17 LINK NE2 HIS A 319 CU CU A 513 1555 1555 2.16 LINK CU CU A 513 O HOH A 870 1555 1555 1.91 LINK CU CU A 514 O HOH A 870 1555 1555 1.90 CISPEP 1 GLY A 222 PRO A 223 0 -5.45 CISPEP 2 ASP A 301 PRO A 302 0 8.52 CISPEP 3 SER A 365 PRO A 366 0 0.25 CRYST1 86.404 97.177 46.998 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011574 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010290 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021278 0.00000