HEADER HYDROLASE 15-MAY-20 6Z2B TITLE TOPRIM DOMAIN OF RNASE M5 BOUND WITH TWO MG2+ IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE M5; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: RNASE M5,RIBOSOMAL RNA TERMINAL MATURASE M5; COMPND 5 EC: 3.1.26.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: RNMV, B4109_0079, B4114_0027, D9548_05595, TGS27_1231; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOPRIM DOMAIN, RIBONUCLEASE, MAGNESIUM BINDING, RNASE M5, RIBOSOMAL KEYWDS 2 RNA RIBONUCLEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.OERUM,M.CATALA,C.TISNE REVDAT 3 24-JAN-24 6Z2B 1 REMARK REVDAT 2 17-NOV-21 6Z2B 1 JRNL REVDAT 1 17-MAR-21 6Z2B 0 JRNL AUTH S.OERUM,M.CATALA,M.BOURGUET,L.GILET,P.BARRAUD,S.CIANFERANI, JRNL AUTH 2 C.CONDON,C.TISNE JRNL TITL STRUCTURAL STUDIES OF RNASE M5 REVEAL TWO-METAL-ION JRNL TITL 2 SUPPORTED TWO-STEP DSRNA CLEAVAGE FOR 5S RRNA MATURATION. JRNL REF RNA BIOL. V. 18 1996 2021 JRNL REFN ESSN 1555-8584 JRNL PMID 33541205 JRNL DOI 10.1080/15476286.2021.1885896 REMARK 2 REMARK 2 RESOLUTION. 2.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 23233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1161 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3235 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.350 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): -3.5768 -0.2870 28.2534 REMARK 3 T TENSOR REMARK 3 T11: 0.3732 T22: 0.2887 REMARK 3 T33: 0.3956 T12: 0.0323 REMARK 3 T13: -0.0153 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 6.3920 L22: 4.6472 REMARK 3 L33: 8.4157 L12: -0.5706 REMARK 3 L13: -1.4042 L23: -0.3427 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: 0.1211 S13: 0.4155 REMARK 3 S21: -0.1273 S22: 0.0748 S23: 0.4501 REMARK 3 S31: -0.4103 S32: -0.7529 S33: -0.0804 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 113 REMARK 3 ORIGIN FOR THE GROUP (A): 16.7332 2.0365 9.3101 REMARK 3 T TENSOR REMARK 3 T11: 0.3673 T22: 0.2650 REMARK 3 T33: 0.3128 T12: 0.0116 REMARK 3 T13: 0.0202 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 6.6138 L22: 3.6296 REMARK 3 L33: 6.8060 L12: 0.8125 REMARK 3 L13: -0.9264 L23: -0.2208 REMARK 3 S TENSOR REMARK 3 S11: 0.0170 S12: -0.2567 S13: -0.0098 REMARK 3 S21: 0.1520 S22: 0.0140 S23: -0.1262 REMARK 3 S31: -0.1235 S32: 0.2278 S33: -0.0396 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 113 REMARK 3 ORIGIN FOR THE GROUP (A): 6.2562 -10.6222 49.2695 REMARK 3 T TENSOR REMARK 3 T11: 0.4264 T22: 0.5563 REMARK 3 T33: 0.3671 T12: -0.1254 REMARK 3 T13: 0.0339 T23: -0.0842 REMARK 3 L TENSOR REMARK 3 L11: 5.9944 L22: 4.8198 REMARK 3 L33: 7.2734 L12: 1.3110 REMARK 3 L13: -1.4333 L23: -1.9202 REMARK 3 S TENSOR REMARK 3 S11: 0.2358 S12: -0.8254 S13: 0.3449 REMARK 3 S21: 0.2897 S22: -0.1875 S23: -0.1165 REMARK 3 S31: -0.3916 S32: 0.7696 S33: -0.0147 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 113 REMARK 3 ORIGIN FOR THE GROUP (A): -12.5896 -17.5331 67.6267 REMARK 3 T TENSOR REMARK 3 T11: 0.4870 T22: 0.7461 REMARK 3 T33: 0.4226 T12: -0.1357 REMARK 3 T13: 0.0840 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 6.1482 L22: 3.0687 REMARK 3 L33: 6.4719 L12: 0.0048 REMARK 3 L13: 0.5222 L23: -0.8382 REMARK 3 S TENSOR REMARK 3 S11: -0.0985 S12: -0.4869 S13: -0.3035 REMARK 3 S21: -0.0987 S22: 0.2061 S23: 0.2149 REMARK 3 S31: 0.2841 S32: -0.5947 S33: -0.1012 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Z2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23254 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.138 REMARK 200 RESOLUTION RANGE LOW (A) : 43.675 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6TG6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE PH REMARK 280 4.6, 30% (W/V) POLYETHYLENE GLYCOL 4000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.85000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.16000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.85000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 15.16000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 84 REMARK 465 ALA A 85 REMARK 465 LYS A 86 REMARK 465 ALA A 87 REMARK 465 ARG A 88 REMARK 465 SER A 89 REMARK 465 GLY A 90 REMARK 465 LYS A 91 REMARK 465 GLY A 92 REMARK 465 ILE A 93 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 GLY C -2 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 ARG C 82 REMARK 465 GLU C 83 REMARK 465 ALA C 84 REMARK 465 ALA C 85 REMARK 465 LYS C 86 REMARK 465 ALA C 87 REMARK 465 ARG C 88 REMARK 465 SER C 89 REMARK 465 GLY C 90 REMARK 465 LYS C 91 REMARK 465 GLY C 92 REMARK 465 GLY D -2 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 GLU D 83 REMARK 465 ALA D 84 REMARK 465 ALA D 85 REMARK 465 LYS D 86 REMARK 465 ALA D 87 REMARK 465 ARG D 88 REMARK 465 SER D 89 REMARK 465 GLY D 90 REMARK 465 LYS D 91 REMARK 465 GLY D 92 REMARK 465 ILE D 93 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 81 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN C 30 72.81 56.44 REMARK 500 PHE C 59 -71.27 -54.79 REMARK 500 ASN C 109 62.79 -118.45 REMARK 500 ASN D 30 67.23 37.74 REMARK 500 PHE D 54 72.24 -151.19 REMARK 500 PRO D 57 46.19 -80.54 REMARK 500 ASP D 58 -164.73 -129.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 10 OE1 REMARK 620 2 ASP B 56 OD2 92.0 REMARK 620 3 HOH B 303 O 174.0 83.4 REMARK 620 4 HOH B 305 O 91.8 105.8 85.6 REMARK 620 5 HOH B 336 O 88.9 91.2 95.1 163.0 REMARK 620 6 HOH B 337 O 95.0 163.7 90.5 88.7 74.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 96 OE2 REMARK 620 2 HOH B 302 O 104.5 REMARK 620 3 HOH B 336 O 157.0 98.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 DBREF1 6Z2B A 1 113 UNP A0A087LGV4_GEOSE DBREF2 6Z2B A A0A087LGV4 1 113 DBREF1 6Z2B B 1 113 UNP A0A087LGV4_GEOSE DBREF2 6Z2B B A0A087LGV4 1 113 DBREF1 6Z2B C 1 113 UNP A0A087LGV4_GEOSE DBREF2 6Z2B C A0A087LGV4 1 113 DBREF1 6Z2B D 1 113 UNP A0A087LGV4_GEOSE DBREF2 6Z2B D A0A087LGV4 1 113 SEQADV 6Z2B GLY A -2 UNP A0A087LGV EXPRESSION TAG SEQADV 6Z2B GLY A -1 UNP A0A087LGV EXPRESSION TAG SEQADV 6Z2B SER A 0 UNP A0A087LGV EXPRESSION TAG SEQADV 6Z2B GLY B -2 UNP A0A087LGV EXPRESSION TAG SEQADV 6Z2B GLY B -1 UNP A0A087LGV EXPRESSION TAG SEQADV 6Z2B SER B 0 UNP A0A087LGV EXPRESSION TAG SEQADV 6Z2B GLY C -2 UNP A0A087LGV EXPRESSION TAG SEQADV 6Z2B GLY C -1 UNP A0A087LGV EXPRESSION TAG SEQADV 6Z2B SER C 0 UNP A0A087LGV EXPRESSION TAG SEQADV 6Z2B GLY D -2 UNP A0A087LGV EXPRESSION TAG SEQADV 6Z2B GLY D -1 UNP A0A087LGV EXPRESSION TAG SEQADV 6Z2B SER D 0 UNP A0A087LGV EXPRESSION TAG SEQRES 1 A 116 GLY GLY SER MET LYS ILE LYS GLU VAL ILE VAL VAL GLU SEQRES 2 A 116 GLY LYS ASP ASP THR ALA ALA ILE ARG ARG ALA VAL ASP SEQRES 3 A 116 ALA ASP THR ILE GLU THR ASN GLY ALA ALA VAL GLY ALA SEQRES 4 A 116 GLU VAL ILE GLU ARG ILE LYS LEU ALA LYS GLU ARG ARG SEQRES 5 A 116 GLY VAL ILE ILE PHE THR ASP PRO ASP PHE PRO GLY GLU SEQRES 6 A 116 LYS ILE ARG ARG THR ILE ALA GLU GLN VAL PRO GLY CYS SEQRES 7 A 116 LYS HIS ALA PHE LEU PRO ARG GLU ALA ALA LYS ALA ARG SEQRES 8 A 116 SER GLY LYS GLY ILE GLY VAL GLU HIS ALA SER PRO ASP SEQRES 9 A 116 ASP ILE ARG GLN ALA LEU ALA ASN VAL TYR GLU GLU SEQRES 1 B 116 GLY GLY SER MET LYS ILE LYS GLU VAL ILE VAL VAL GLU SEQRES 2 B 116 GLY LYS ASP ASP THR ALA ALA ILE ARG ARG ALA VAL ASP SEQRES 3 B 116 ALA ASP THR ILE GLU THR ASN GLY ALA ALA VAL GLY ALA SEQRES 4 B 116 GLU VAL ILE GLU ARG ILE LYS LEU ALA LYS GLU ARG ARG SEQRES 5 B 116 GLY VAL ILE ILE PHE THR ASP PRO ASP PHE PRO GLY GLU SEQRES 6 B 116 LYS ILE ARG ARG THR ILE ALA GLU GLN VAL PRO GLY CYS SEQRES 7 B 116 LYS HIS ALA PHE LEU PRO ARG GLU ALA ALA LYS ALA ARG SEQRES 8 B 116 SER GLY LYS GLY ILE GLY VAL GLU HIS ALA SER PRO ASP SEQRES 9 B 116 ASP ILE ARG GLN ALA LEU ALA ASN VAL TYR GLU GLU SEQRES 1 C 116 GLY GLY SER MET LYS ILE LYS GLU VAL ILE VAL VAL GLU SEQRES 2 C 116 GLY LYS ASP ASP THR ALA ALA ILE ARG ARG ALA VAL ASP SEQRES 3 C 116 ALA ASP THR ILE GLU THR ASN GLY ALA ALA VAL GLY ALA SEQRES 4 C 116 GLU VAL ILE GLU ARG ILE LYS LEU ALA LYS GLU ARG ARG SEQRES 5 C 116 GLY VAL ILE ILE PHE THR ASP PRO ASP PHE PRO GLY GLU SEQRES 6 C 116 LYS ILE ARG ARG THR ILE ALA GLU GLN VAL PRO GLY CYS SEQRES 7 C 116 LYS HIS ALA PHE LEU PRO ARG GLU ALA ALA LYS ALA ARG SEQRES 8 C 116 SER GLY LYS GLY ILE GLY VAL GLU HIS ALA SER PRO ASP SEQRES 9 C 116 ASP ILE ARG GLN ALA LEU ALA ASN VAL TYR GLU GLU SEQRES 1 D 116 GLY GLY SER MET LYS ILE LYS GLU VAL ILE VAL VAL GLU SEQRES 2 D 116 GLY LYS ASP ASP THR ALA ALA ILE ARG ARG ALA VAL ASP SEQRES 3 D 116 ALA ASP THR ILE GLU THR ASN GLY ALA ALA VAL GLY ALA SEQRES 4 D 116 GLU VAL ILE GLU ARG ILE LYS LEU ALA LYS GLU ARG ARG SEQRES 5 D 116 GLY VAL ILE ILE PHE THR ASP PRO ASP PHE PRO GLY GLU SEQRES 6 D 116 LYS ILE ARG ARG THR ILE ALA GLU GLN VAL PRO GLY CYS SEQRES 7 D 116 LYS HIS ALA PHE LEU PRO ARG GLU ALA ALA LYS ALA ARG SEQRES 8 D 116 SER GLY LYS GLY ILE GLY VAL GLU HIS ALA SER PRO ASP SEQRES 9 D 116 ASP ILE ARG GLN ALA LEU ALA ASN VAL TYR GLU GLU HET MG B 201 1 HET MG B 202 1 HETNAM MG MAGNESIUM ION FORMUL 5 MG 2(MG 2+) FORMUL 7 HOH *103(H2 O) HELIX 1 AA1 GLY A 11 ARG A 20 1 10 HELIX 2 AA2 GLY A 35 ARG A 49 1 15 HELIX 3 AA3 ASP A 58 VAL A 72 1 15 HELIX 4 AA4 GLY A 94 ALA A 98 5 5 HELIX 5 AA5 SER A 99 ASN A 109 1 11 HELIX 6 AA6 GLY B 11 VAL B 22 1 12 HELIX 7 AA7 GLY B 35 GLY B 50 1 16 HELIX 8 AA8 ASP B 58 VAL B 72 1 15 HELIX 9 AA9 PRO B 81 LYS B 86 5 6 HELIX 10 AB1 GLY B 94 ALA B 98 5 5 HELIX 11 AB2 SER B 99 ALA B 108 1 10 HELIX 12 AB3 GLY C 11 ARG C 20 1 10 HELIX 13 AB4 GLY C 35 ARG C 49 1 15 HELIX 14 AB5 ASP C 58 VAL C 72 1 15 HELIX 15 AB6 GLY C 94 ALA C 98 5 5 HELIX 16 AB7 SER C 99 ASN C 109 1 11 HELIX 17 AB8 GLY D 11 VAL D 22 1 12 HELIX 18 AB9 GLY D 35 ARG D 49 1 15 HELIX 19 AC1 ASP D 58 VAL D 72 1 15 HELIX 20 AC2 GLY D 94 ALA D 98 5 5 HELIX 21 AC3 SER D 99 VAL D 110 1 12 SHEET 1 AA1 4 THR A 26 GLU A 28 0 SHEET 2 AA1 4 VAL A 6 VAL A 9 1 N VAL A 9 O ILE A 27 SHEET 3 AA1 4 VAL A 51 ILE A 53 1 O ILE A 52 N VAL A 6 SHEET 4 AA1 4 LYS A 76 HIS A 77 1 O LYS A 76 N ILE A 53 SHEET 1 AA2 4 THR B 26 GLU B 28 0 SHEET 2 AA2 4 VAL B 6 VAL B 9 1 N VAL B 9 O ILE B 27 SHEET 3 AA2 4 VAL B 51 ILE B 53 1 O ILE B 52 N VAL B 8 SHEET 4 AA2 4 LYS B 76 HIS B 77 1 O LYS B 76 N ILE B 53 SHEET 1 AA3 4 THR C 26 GLU C 28 0 SHEET 2 AA3 4 VAL C 6 VAL C 9 1 N VAL C 9 O ILE C 27 SHEET 3 AA3 4 VAL C 51 PHE C 54 1 O ILE C 52 N VAL C 8 SHEET 4 AA3 4 LYS C 76 ALA C 78 1 O ALA C 78 N ILE C 53 SHEET 1 AA4 4 THR D 26 GLU D 28 0 SHEET 2 AA4 4 VAL D 6 VAL D 9 1 N VAL D 9 O ILE D 27 SHEET 3 AA4 4 VAL D 51 ILE D 53 1 O ILE D 52 N VAL D 8 SHEET 4 AA4 4 LYS D 76 HIS D 77 1 O LYS D 76 N VAL D 51 LINK OE1 GLU B 10 MG MG B 201 1555 1555 2.05 LINK OD2 ASP B 56 MG MG B 201 1555 1555 2.21 LINK OE2 GLU B 96 MG MG B 202 1555 1555 2.02 LINK MG MG B 201 O HOH B 303 1555 1555 1.97 LINK MG MG B 201 O HOH B 305 1555 1555 1.94 LINK MG MG B 201 O HOH B 336 1555 1555 2.44 LINK MG MG B 201 O HOH B 337 1555 1555 2.68 LINK MG MG B 202 O HOH B 302 1555 1555 1.97 LINK MG MG B 202 O HOH B 336 1555 1555 2.35 SITE 1 AC1 6 GLU B 10 ASP B 56 HOH B 303 HOH B 305 SITE 2 AC1 6 HOH B 336 HOH B 337 SITE 1 AC2 3 GLU B 96 HOH B 302 HOH B 336 CRYST1 87.700 30.320 158.310 90.00 100.89 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011403 0.000000 0.002194 0.00000 SCALE2 0.000000 0.032982 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006433 0.00000