HEADER MEMBRANE PROTEIN 19-MAY-20 6Z34 TITLE CYMD MONOAROMATIC HYDROCARBON CHANNEL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYMD; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OUTER MEMBRANE PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: WILD TYPE PROTEIN, HIS-TAGGED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: CYMD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FADL MONOAROMATIC HYDROCARBONS BIODEGRADATION TOLUENE OUTER MEMBRANE KEYWDS 2 TRANSPORT DIFFUSION CYMD, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.VAN DEN BERG REVDAT 3 24-JAN-24 6Z34 1 REMARK REVDAT 2 30-DEC-20 6Z34 1 JRNL REVDAT 1 04-NOV-20 6Z34 0 JRNL AUTH K.SOMBOON,A.DOBLE,D.BULMER,A.BASLE,S.KHALID,B.VAN DEN BERG JRNL TITL UPTAKE OF MONOAROMATIC HYDROCARBONS DURING BIODEGRADATION BY JRNL TITL 2 FADL CHANNEL-MEDIATED LATERAL DIFFUSION. JRNL REF NAT COMMUN V. 11 6331 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 33303757 JRNL DOI 10.1038/S41467-020-20126-Y REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 21316 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1068 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.7900 - 4.5388 1.00 2702 142 0.2073 0.2694 REMARK 3 2 4.5388 - 3.6031 1.00 2580 144 0.1878 0.2456 REMARK 3 3 3.6031 - 3.1478 1.00 2552 134 0.1839 0.2460 REMARK 3 4 3.1478 - 2.8601 1.00 2538 148 0.2160 0.2770 REMARK 3 5 2.8601 - 2.6551 1.00 2548 134 0.2250 0.2621 REMARK 3 6 2.6551 - 2.4986 1.00 2522 135 0.2500 0.3423 REMARK 3 7 2.4986 - 2.3735 0.99 2532 102 0.3101 0.3726 REMARK 3 8 2.3735 - 2.2702 0.91 2274 129 0.3779 0.4238 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2951 REMARK 3 ANGLE : 1.073 4007 REMARK 3 CHIRALITY : 0.058 447 REMARK 3 PLANARITY : 0.006 517 REMARK 3 DIHEDRAL : 7.388 1699 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8745 104.8393 132.1609 REMARK 3 T TENSOR REMARK 3 T11: 0.4851 T22: 0.5303 REMARK 3 T33: 0.4688 T12: 0.0807 REMARK 3 T13: -0.0468 T23: -0.0578 REMARK 3 L TENSOR REMARK 3 L11: 3.5197 L22: 4.4216 REMARK 3 L33: 0.2291 L12: -0.6025 REMARK 3 L13: -0.7997 L23: 0.0875 REMARK 3 S TENSOR REMARK 3 S11: -0.0551 S12: -0.0447 S13: 0.3470 REMARK 3 S21: 0.0679 S22: 0.0178 S23: 0.0818 REMARK 3 S31: -0.4272 S32: -0.2804 S33: 0.0066 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3322 104.2849 138.9994 REMARK 3 T TENSOR REMARK 3 T11: 0.4668 T22: 0.5238 REMARK 3 T33: 0.4358 T12: 0.1052 REMARK 3 T13: -0.0363 T23: -0.0687 REMARK 3 L TENSOR REMARK 3 L11: 1.2380 L22: 1.0129 REMARK 3 L33: 0.6569 L12: -0.0294 REMARK 3 L13: -0.1498 L23: -0.4870 REMARK 3 S TENSOR REMARK 3 S11: -0.0430 S12: -0.0439 S13: 0.0824 REMARK 3 S21: -0.0791 S22: 0.0007 S23: -0.0228 REMARK 3 S31: -0.5167 S32: 0.0106 S33: 0.0456 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 247 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6059 98.5739 155.2159 REMARK 3 T TENSOR REMARK 3 T11: 0.5443 T22: 0.5554 REMARK 3 T33: 0.4691 T12: -0.0763 REMARK 3 T13: 0.0014 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 1.3969 L22: 0.5090 REMARK 3 L33: 2.4113 L12: 0.2041 REMARK 3 L13: 1.0538 L23: 0.3284 REMARK 3 S TENSOR REMARK 3 S11: 0.0910 S12: -0.3358 S13: -0.0679 REMARK 3 S21: 0.2629 S22: -0.0476 S23: 0.0363 REMARK 3 S31: -0.0931 S32: -0.2109 S33: -0.0133 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 346 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0951 101.2874 152.9413 REMARK 3 T TENSOR REMARK 3 T11: 0.5947 T22: 0.4541 REMARK 3 T33: 0.4939 T12: -0.0158 REMARK 3 T13: 0.0017 T23: -0.0667 REMARK 3 L TENSOR REMARK 3 L11: 2.0082 L22: 0.3818 REMARK 3 L33: 1.4911 L12: 0.7925 REMARK 3 L13: 0.9588 L23: 0.6385 REMARK 3 S TENSOR REMARK 3 S11: 0.3990 S12: -0.3713 S13: -0.1468 REMARK 3 S21: 0.2834 S22: -0.1868 S23: -0.0441 REMARK 3 S31: 0.0949 S32: -0.3091 S33: -0.2308 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 347 THROUGH 439 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7855 114.2222 135.6244 REMARK 3 T TENSOR REMARK 3 T11: 0.4655 T22: 0.4685 REMARK 3 T33: 0.6082 T12: 0.0882 REMARK 3 T13: -0.0312 T23: -0.0445 REMARK 3 L TENSOR REMARK 3 L11: 3.3837 L22: 1.3860 REMARK 3 L33: 3.3014 L12: -0.1619 REMARK 3 L13: -0.8774 L23: -0.4272 REMARK 3 S TENSOR REMARK 3 S11: 0.0681 S12: -0.2704 S13: 0.1526 REMARK 3 S21: 0.0107 S22: -0.1193 S23: 0.1322 REMARK 3 S31: -0.4496 S32: 0.1494 S33: 0.1090 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Z34 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108797. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21321 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 43.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BRZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BICINE/TRIZMA BASE PH 8.5, 0.02M REMARK 280 MIXED MONOSACCHARIDES, 10-15% PEG 1000/10-15% PEG 3350/12.5% MPD, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.44500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.79000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.39000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.44500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.79000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.39000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.44500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.79000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.39000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.44500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.79000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.39000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 ASP A 2 REMARK 465 LYS A 60 REMARK 465 ASN A 61 REMARK 465 THR A 62 REMARK 465 ALA A 63 REMARK 465 THR A 64 REMARK 465 GLY A 65 REMARK 465 GLU A 66 REMARK 465 LYS A 67 REMARK 465 ALA A 68 REMARK 465 ASP A 69 REMARK 465 SER A 70 REMARK 465 HIS A 71 REMARK 465 SER A 72 REMARK 465 ARG A 73 REMARK 465 GLY A 74 REMARK 465 GLN A 108A REMARK 465 PHE A 108B REMARK 465 GLY A 108C REMARK 465 ASP A 108D REMARK 465 THR A 108E REMARK 465 SER A 108F REMARK 465 PHE A 108G REMARK 465 LEU A 108H REMARK 465 SER A 108I REMARK 465 ARG A 108J REMARK 465 THR A 108K REMARK 465 THR A 108L REMARK 465 THR A 108M REMARK 465 ASN A 108N REMARK 465 ASN A 108O REMARK 465 LEU A 108P REMARK 465 ASN A 108Q REMARK 465 THR A 108R REMARK 465 GLY A 108S REMARK 465 SER A 365 REMARK 465 SER A 366 REMARK 465 GLY A 367 REMARK 465 THR A 368 REMARK 465 MET A 369 REMARK 465 PRO A 370 REMARK 465 ILE A 371 REMARK 465 ILE A 372 REMARK 465 LYS A 405 REMARK 465 VAL A 406 REMARK 465 SER A 407 REMARK 465 ASN A 408 REMARK 465 ASP A 409 REMARK 465 SER A 410 REMARK 465 LEU A 411 REMARK 465 PRO A 412 REMARK 465 ILE A 413 REMARK 465 THR A 414 REMARK 465 ASP A 415 REMARK 465 LYS A 416 REMARK 465 PRO A 417 REMARK 465 ILE A 418 REMARK 465 HIS A 440 REMARK 465 HIS A 441 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 299 OD1 ASN A 336 2.08 REMARK 500 O ASN A 5 N VAL A 7 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 177 CA - CB - CG ANGL. DEV. = 21.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 4 -135.92 -72.14 REMARK 500 LEU A 6 71.36 -51.83 REMARK 500 ASN A 24 94.92 -66.83 REMARK 500 LEU A 32 -91.53 -126.37 REMARK 500 GLU A 92 -119.71 53.63 REMARK 500 ALA A 204 82.64 -150.48 REMARK 500 SER A 216 140.71 -171.57 REMARK 500 HIS A 273 -84.87 -101.65 REMARK 500 GLU A 276 90.57 -162.32 REMARK 500 TYR A 303 68.02 -100.25 REMARK 500 ASP A 310 72.37 -51.73 REMARK 500 PRO A 329 101.19 -59.19 REMARK 500 HIS A 437 -65.49 -140.05 REMARK 500 HIS A 438 53.52 36.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 6 VAL A 7 144.30 REMARK 500 REMARK 500 REMARK: NULL DBREF 6Z34 A 1 435 UNP O33458 O33458_PSEPU 25 460 SEQADV 6Z34 HIS A 436 UNP O33458 EXPRESSION TAG SEQADV 6Z34 HIS A 437 UNP O33458 EXPRESSION TAG SEQADV 6Z34 HIS A 438 UNP O33458 EXPRESSION TAG SEQADV 6Z34 HIS A 439 UNP O33458 EXPRESSION TAG SEQADV 6Z34 HIS A 440 UNP O33458 EXPRESSION TAG SEQADV 6Z34 HIS A 441 UNP O33458 EXPRESSION TAG SEQRES 1 A 442 THR ASP ALA PHE ASN LEU VAL GLY VAL GLY PRO VAL SER SEQRES 2 A 442 GLN GLY MET GLY GLY ILE GLY ALA ALA PHE ASN ILE GLY SEQRES 3 A 442 ALA GLN GLY MET MET LEU ASN PRO ALA THR LEU THR GLN SEQRES 4 A 442 MET GLN GLU GLY MET HIS LEU GLY LEU GLY MET ASP ILE SEQRES 5 A 442 ILE THR ALA GLU LEU GLU VAL LYS ASN THR ALA THR GLY SEQRES 6 A 442 GLU LYS ALA ASP SER HIS SER ARG GLY ARG ASN ASN GLY SEQRES 7 A 442 PRO TYR VAL ALA PRO GLU LEU SER LEU VAL TRP ARG GLY SEQRES 8 A 442 GLU ARG TYR ALA LEU GLY VAL GLY ALA PHE ALA SER ASP SEQRES 9 A 442 GLY VAL GLY THR GLN PHE GLY ASP THR SER PHE LEU SER SEQRES 10 A 442 ARG THR THR THR ASN ASN LEU ASN THR GLY LEU GLU ASN SEQRES 11 A 442 TYR SER ARG LEU ILE VAL LEU ARG ILE PRO PHE SER ALA SEQRES 12 A 442 ALA TYR GLN VAL ASN GLU LYS LEU SER VAL GLY ALA SER SEQRES 13 A 442 LEU ASP ALA VAL TRP THR SER VAL ASN LEU GLY LEU LEU SEQRES 14 A 442 LEU ASP THR THR GLN ILE GLY THR LEU VAL GLY GLN GLY SEQRES 15 A 442 GLN VAL SER GLY SER LEU MET PRO ALA LEU LEU SER VAL SEQRES 16 A 442 PRO GLU LEU SER ALA GLY TYR LEU SER ALA ASP ASN HIS SEQRES 17 A 442 ARG ALA SER GLY GLY GLY VAL ASP SER TRP GLY ILE GLY SEQRES 18 A 442 GLY ARG LEU GLY LEU THR TYR GLN LEU THR PRO LYS THR SEQRES 19 A 442 ARG VAL GLY ILE VAL TYR ASN PHE LYS THR HIS VAL GLY SEQRES 20 A 442 ASP LEU SER GLY ASN ALA ASP LEU THR ALA VAL SER ALA SEQRES 21 A 442 VAL ALA GLY ASN ILE PRO LEU SER GLY GLU LEU LYS LEU SEQRES 22 A 442 HIS ASN PHE GLU MET PRO ALA SER LEU VAL ALA GLY ILE SEQRES 23 A 442 SER HIS GLU PHE SER ASP GLN PHE ALA VAL ALA PHE ASP SEQRES 24 A 442 TYR LYS ARG VAL TYR TRP SER ASP VAL MET ASP ASP ILE SEQRES 25 A 442 GLU VAL ASN PHE LYS GLN LYS ALA THR GLY ASP THR ILE SEQRES 26 A 442 ASN LEU LYS LEU PRO PHE ASN TYR ARG ASP THR ASN VAL SEQRES 27 A 442 TYR SER LEU GLY ALA GLN TYR ARG TYR GLY ALA ASN TRP SEQRES 28 A 442 VAL PHE ARG ALA GLY VAL HIS TYR ALA GLN LEU ALA ASN SEQRES 29 A 442 PRO SER SER GLY THR MET PRO ILE ILE PRO SER THR PRO SEQRES 30 A 442 THR THR SER LEU SER GLY GLY PHE SER TYR ALA PHE SER SEQRES 31 A 442 PRO GLU ASP VAL VAL ASP PHE SER LEU ALA TYR GLY PHE SEQRES 32 A 442 LYS LYS LYS VAL SER ASN ASP SER LEU PRO ILE THR ASP SEQRES 33 A 442 LYS PRO ILE GLU VAL SER HIS SER GLN ILE VAL THR SER SEQRES 34 A 442 ILE SER TYR THR LYS SER PHE HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *13(H2 O) HELIX 1 1 GLY A 10 MET A 16 1 7 HELIX 2 2 GLY A 26 MET A 31 5 6 HELIX 3 3 PRO A 34 GLN A 39 5 6 HELIX 4 4 THR A 171 GLY A 179 1 9 HELIX 5 5 LEU A 187 LEU A 192 1 6 HELIX 6 6 TRP A 304 ASP A 306 5 3 SHEET 1 A15 TYR A 80 ARG A 90 0 SHEET 2 A15 GLY A 43 GLU A 58 -1 SHEET 3 A15 SER A 421 HIS A 436 -1 SHEET 4 A15 ASP A 392 LYS A 403 -1 SHEET 5 A15 THR A 377 SER A 389 -1 SHEET 6 A15 TRP A 350 LEU A 361 -1 SHEET 7 A15 THR A 335 TYR A 346 -1 SHEET 8 A15 PHE A 293 VAL A 302 -1 SHEET 9 A15 SER A 280 SER A 290 -1 SHEET 10 A15 THR A 233 ASN A 240 -1 SHEET 11 A15 VAL A 214 THR A 230 -1 SHEET 12 A15 LEU A 150 GLY A 166 -1 SHEET 13 A15 TYR A 130 GLN A 145 -1 SHEET 14 A15 TYR A 94 PHE A 101 -1 SHEET 15 A15 GLU A 84 GLY A 91 -1 SHEET 1 B 2 PHE A 101 GLY A 107 0 SHEET 2 B 2 SER A 131 ARG A 137 -1 SHEET 1 C 6 LEU A 165 ASP A 170 0 SHEET 2 C 6 LEU A 197 ALA A 204 -1 SHEET 3 C 6 LEU A 248 SER A 258 -1 SHEET 4 C 6 ILE A 264 LEU A 272 -1 SHEET 5 C 6 GLU A 312 GLN A 317 -1 SHEET 6 C 6 THR A 323 LYS A 327 -1 SHEET 1 D 2 GLY A 213 ASP A 215 0 SHEET 2 D 2 SER A 249 ASN A 251 -1 CRYST1 78.890 87.580 132.780 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012676 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011418 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007531 0.00000