HEADER MEMBRANE PROTEIN 19-MAY-20 6Z38 TITLE TODX DELTAS2S3 MUTANT MONOAROMATIC HYDROCARBON CHANNEL COMPND MOL_ID: 1; COMPND 2 MOLECULE: TODX; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 GENE: TODX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FADL MONOAROMATIC HYDROCARBONS BIODEGRADATION TOLUENE OUTER MEMBRANE KEYWDS 2 TRANSPORT DIFFUSION TODX, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.VAN DEN BERG REVDAT 4 24-JAN-24 6Z38 1 REMARK REVDAT 3 30-DEC-20 6Z38 1 JRNL REVDAT 2 09-DEC-20 6Z38 1 TITLE REVDAT 1 04-NOV-20 6Z38 0 JRNL AUTH K.SOMBOON,A.DOBLE,D.BULMER,A.BASLE,S.KHALID,B.VAN DEN BERG JRNL TITL UPTAKE OF MONOAROMATIC HYDROCARBONS DURING BIODEGRADATION BY JRNL TITL 2 FADL CHANNEL-MEDIATED LATERAL DIFFUSION. JRNL REF NAT COMMUN V. 11 6331 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 33303757 JRNL DOI 10.1038/S41467-020-20126-Y REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 18252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.318 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1400 - 5.2700 1.00 3015 158 0.2486 0.3155 REMARK 3 2 5.2700 - 4.1800 1.00 2913 147 0.2341 0.2763 REMARK 3 3 4.1800 - 3.6500 1.00 2868 155 0.2359 0.2829 REMARK 3 4 3.6500 - 3.3200 1.00 2886 112 0.2654 0.3769 REMARK 3 5 3.3200 - 3.0800 1.00 2836 157 0.3159 0.4282 REMARK 3 6 3.0800 - 2.9000 1.00 2871 134 0.3499 0.4694 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.547 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 39.772 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 96.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 127.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3177 REMARK 3 ANGLE : 1.330 4313 REMARK 3 CHIRALITY : 0.068 488 REMARK 3 PLANARITY : 0.006 558 REMARK 3 DIHEDRAL : 5.555 1840 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0466 32.1478 214.0929 REMARK 3 T TENSOR REMARK 3 T11: 0.7718 T22: 1.0562 REMARK 3 T33: 1.0994 T12: -0.1257 REMARK 3 T13: 0.3043 T23: -0.8353 REMARK 3 L TENSOR REMARK 3 L11: 0.1316 L22: 4.4070 REMARK 3 L33: 5.1173 L12: 0.7941 REMARK 3 L13: 0.1286 L23: 1.3689 REMARK 3 S TENSOR REMARK 3 S11: -0.4471 S12: -1.6144 S13: 1.1235 REMARK 3 S21: -1.1896 S22: -0.1776 S23: 0.3317 REMARK 3 S31: 0.0238 S32: 0.4356 S33: 0.1283 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3964 27.4283 202.9367 REMARK 3 T TENSOR REMARK 3 T11: 0.8611 T22: 0.7831 REMARK 3 T33: 0.8603 T12: -0.0758 REMARK 3 T13: -0.0452 T23: -0.3183 REMARK 3 L TENSOR REMARK 3 L11: 2.0264 L22: 4.9946 REMARK 3 L33: 4.0970 L12: -1.5327 REMARK 3 L13: -0.5356 L23: 1.5668 REMARK 3 S TENSOR REMARK 3 S11: 0.0181 S12: -0.1904 S13: 0.9762 REMARK 3 S21: 0.2706 S22: 0.4979 S23: -1.3488 REMARK 3 S31: -0.1216 S32: 0.5215 S33: -0.0949 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0623 13.0366 193.0076 REMARK 3 T TENSOR REMARK 3 T11: 0.6146 T22: 0.4451 REMARK 3 T33: 0.5842 T12: -0.1331 REMARK 3 T13: 0.1093 T23: -0.1596 REMARK 3 L TENSOR REMARK 3 L11: 1.2698 L22: 3.1234 REMARK 3 L33: 4.1987 L12: 1.6876 REMARK 3 L13: 0.0295 L23: 2.0822 REMARK 3 S TENSOR REMARK 3 S11: -0.1874 S12: 0.1438 S13: -0.0826 REMARK 3 S21: -0.6718 S22: 0.2502 S23: -0.3347 REMARK 3 S31: 0.2086 S32: -0.0188 S33: 0.0117 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 208 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4051 20.1655 204.6974 REMARK 3 T TENSOR REMARK 3 T11: 0.6557 T22: 0.8808 REMARK 3 T33: 0.9477 T12: -0.0712 REMARK 3 T13: 0.1476 T23: -0.3829 REMARK 3 L TENSOR REMARK 3 L11: 0.4056 L22: 2.7719 REMARK 3 L33: 1.4982 L12: 0.2919 REMARK 3 L13: 0.4507 L23: 1.5391 REMARK 3 S TENSOR REMARK 3 S11: 0.0820 S12: -0.0743 S13: 0.6247 REMARK 3 S21: -0.0200 S22: 0.3847 S23: 0.1741 REMARK 3 S31: 0.0729 S32: -0.0750 S33: 0.0969 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 286 THROUGH 336 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7892 13.7458 206.4171 REMARK 3 T TENSOR REMARK 3 T11: 0.8682 T22: 0.7444 REMARK 3 T33: 0.6144 T12: 0.2723 REMARK 3 T13: -0.0295 T23: -0.1218 REMARK 3 L TENSOR REMARK 3 L11: 1.1808 L22: 3.3906 REMARK 3 L33: 8.5866 L12: 0.2867 REMARK 3 L13: 0.8684 L23: 3.8795 REMARK 3 S TENSOR REMARK 3 S11: 0.0342 S12: -0.0197 S13: 0.1394 REMARK 3 S21: -0.0121 S22: -0.1450 S23: 0.2630 REMARK 3 S31: 0.7451 S32: -0.3306 S33: -0.0752 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 337 THROUGH 391 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3768 26.7400 214.2636 REMARK 3 T TENSOR REMARK 3 T11: 0.9823 T22: 1.2452 REMARK 3 T33: 1.4488 T12: -0.4512 REMARK 3 T13: 0.3661 T23: -0.8740 REMARK 3 L TENSOR REMARK 3 L11: 0.4187 L22: 1.0628 REMARK 3 L33: 4.1623 L12: -0.7277 REMARK 3 L13: 0.7732 L23: -0.6417 REMARK 3 S TENSOR REMARK 3 S11: 0.0535 S12: -1.1691 S13: 0.3465 REMARK 3 S21: 1.7634 S22: 0.3629 S23: -0.3019 REMARK 3 S31: 0.3067 S32: 0.2284 S33: -0.1074 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 392 THROUGH 426 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3183 21.8147 208.0349 REMARK 3 T TENSOR REMARK 3 T11: 1.1175 T22: 1.1979 REMARK 3 T33: 1.2099 T12: -0.0819 REMARK 3 T13: -0.1623 T23: -0.4823 REMARK 3 L TENSOR REMARK 3 L11: 0.2794 L22: 5.8084 REMARK 3 L33: 2.1144 L12: -0.4514 REMARK 3 L13: -0.7949 L23: 2.1931 REMARK 3 S TENSOR REMARK 3 S11: -0.2510 S12: -1.2723 S13: 0.0555 REMARK 3 S21: 0.4455 S22: 1.1593 S23: -0.9159 REMARK 3 S31: 0.6521 S32: 1.5406 S33: -0.6006 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Z38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108799. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18258 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3BRZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M NA-CITRATE (PH 4.5), 0.1 M REMARK 280 LI2SO4, 30% PEG 400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.05350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.96400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 86.40350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.05350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.96400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 86.40350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.05350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.96400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 86.40350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.05350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.96400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 86.40350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1 REMARK 465 GLN A 2 REMARK 465 VAL A 3 REMARK 465 PRO A 400 REMARK 465 SER A 401 REMARK 465 TYR A 402 REMARK 465 LEU A 403 REMARK 465 ALA A 404 REMARK 465 GLY A 405 REMARK 465 THR A 406 REMARK 465 GLU A 407 REMARK 465 MET A 408 REMARK 465 HIS A 427 REMARK 465 HIS A 428 REMARK 465 HIS A 429 REMARK 465 HIS A 430 REMARK 465 HIS A 431 REMARK 465 HIS A 432 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 67 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 20 OG SER A 32 1.96 REMARK 500 NH1 ARG A 129 OD1 ASP A 149 1.98 REMARK 500 OE1 GLN A 352 OH TYR A 366 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 67 N - CA - CB ANGL. DEV. = 7.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 7 -124.28 -69.31 REMARK 500 SER A 20 -29.90 -163.92 REMARK 500 SER A 32 -90.38 -122.55 REMARK 500 PRO A 41 171.78 -48.38 REMARK 500 ASP A 56 69.93 -154.27 REMARK 500 ASP A 61 171.60 84.25 REMARK 500 HIS A 63 73.79 50.40 REMARK 500 GLN A 77 136.23 -176.65 REMARK 500 LEU A 84 106.05 179.40 REMARK 500 ASP A 85 -145.54 66.48 REMARK 500 ASN A 113 -64.68 79.08 REMARK 500 ARG A 124 113.32 -164.16 REMARK 500 ALA A 130 88.13 -159.66 REMARK 500 ALA A 138 -94.65 -76.47 REMARK 500 PRO A 181 -78.98 -46.19 REMARK 500 SER A 182 -56.78 -9.69 REMARK 500 ALA A 192 147.84 -177.21 REMARK 500 ARG A 199 171.91 -48.78 REMARK 500 ASN A 200 71.98 -67.92 REMARK 500 ALA A 206 -39.58 61.63 REMARK 500 VAL A 207 91.08 83.90 REMARK 500 PHE A 282 66.47 -105.54 REMARK 500 ASN A 283 137.92 140.90 REMARK 500 ARG A 285 14.99 -146.42 REMARK 500 VAL A 300 92.88 65.79 REMARK 500 ASP A 302 -144.07 -118.29 REMARK 500 ARG A 322 -128.43 55.13 REMARK 500 TYR A 323 -171.18 71.94 REMARK 500 GLN A 324 -177.37 -179.53 REMARK 500 ALA A 334 76.92 -152.96 REMARK 500 ALA A 353 -96.80 -72.39 REMARK 500 LEU A 358 75.15 -68.05 REMARK 500 ILE A 359 80.29 -62.08 REMARK 500 LYS A 368 -79.14 -76.89 REMARK 500 ASP A 380 -22.97 178.31 REMARK 500 LYS A 381 -15.46 66.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 111 GLU A 112 149.09 REMARK 500 GLY A 185 PHE A 186 148.30 REMARK 500 GLU A 269 MET A 270 147.31 REMARK 500 HIS A 321 ARG A 322 149.91 REMARK 500 TYR A 323 GLN A 324 -136.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6Z34 RELATED DB: PDB REMARK 900 RELATED ID: 6Z37 RELATED DB: PDB DBREF 6Z38 A 1 426 UNP Q51971 Q51971_PSEPU 21 453 SEQADV 6Z38 TYR A 72 UNP Q51971 ARG 92 CONFLICT SEQADV 6Z38 ALA A 73 UNP Q51971 SER 93 CONFLICT SEQADV 6Z38 A UNP Q51971 ASN 94 DELETION SEQADV 6Z38 A UNP Q51971 ASN 95 DELETION SEQADV 6Z38 A UNP Q51971 ARG 96 DELETION SEQADV 6Z38 A UNP Q51971 ALA 97 DELETION SEQADV 6Z38 A UNP Q51971 PRO 98 DELETION SEQADV 6Z38 A UNP Q51971 TYR 99 DELETION SEQADV 6Z38 ALA A 76 UNP Q51971 PRO 102 CONFLICT SEQADV 6Z38 A UNP Q51971 GLY 124 DELETION SEQADV 6Z38 HIS A 427 UNP Q51971 EXPRESSION TAG SEQADV 6Z38 HIS A 428 UNP Q51971 EXPRESSION TAG SEQADV 6Z38 HIS A 429 UNP Q51971 EXPRESSION TAG SEQADV 6Z38 HIS A 430 UNP Q51971 EXPRESSION TAG SEQADV 6Z38 HIS A 431 UNP Q51971 EXPRESSION TAG SEQADV 6Z38 HIS A 432 UNP Q51971 EXPRESSION TAG SEQRES 1 A 432 THR GLN VAL PHE ASP LEU GLU GLY TYR GLY ALA ILE SER SEQRES 2 A 432 ARG ALA MET GLY GLY THR SER SER SER TYR TYR THR GLY SEQRES 3 A 432 ASN ALA ALA LEU ILE SER ASN PRO ALA THR LEU SER PHE SEQRES 4 A 432 ALA PRO ASP GLY ASN GLN PHE GLU LEU GLY LEU ASP VAL SEQRES 5 A 432 VAL THR THR ASP ILE LYS VAL HIS ASP SER HIS GLY ALA SEQRES 6 A 432 GLU PRO LYS SER SER THR TYR ALA VAL GLY ALA GLN LEU SEQRES 7 A 432 SER TYR VAL ALA GLN LEU ASP ASP TRP ARG PHE GLY ALA SEQRES 8 A 432 GLY LEU PHE VAL SER SER LEU GLY THR GLU TYR GLY SER SEQRES 9 A 432 LYS SER PHE LEU SER GLN THR GLU ASN GLY ILE GLN THR SEQRES 10 A 432 SER PHE ASP ASN SER SER ARG LEU ILE VAL LEU ARG ALA SEQRES 11 A 432 PRO ILE GLY PHE SER TYR GLN ALA THR SER LYS LEU THR SEQRES 12 A 432 PHE GLY ALA SER VAL ASP LEU VAL TRP THR SER LEU ASN SEQRES 13 A 432 LEU GLU LEU LEU LEU PRO SER SER GLN VAL GLY ALA LEU SEQRES 14 A 432 THR ALA GLN GLY ASN LEU SER GLY GLY LEU VAL PRO SER SEQRES 15 A 432 LEU ALA GLY PHE VAL GLY THR GLY GLY ALA ALA HIS PHE SEQRES 16 A 432 SER LEU SER ARG ASN SER THR ALA GLY GLY ALA VAL ASP SEQRES 17 A 432 ALA VAL GLY TRP GLY GLY ARG LEU GLY LEU THR TYR LYS SEQRES 18 A 432 LEU THR ASP ASN THR VAL LEU GLY ALA MET TYR ASN PHE SEQRES 19 A 432 LYS THR SER VAL GLY ASP LEU GLU GLY LYS ALA THR LEU SEQRES 20 A 432 SER ALA ILE SER GLY ASP GLY ALA VAL LEU PRO LEU ASP SEQRES 21 A 432 GLY ASP ILE ARG VAL LYS ASN PHE GLU MET PRO ALA SER SEQRES 22 A 432 LEU THR LEU GLY LEU ALA HIS GLN PHE ASN GLU ARG TRP SEQRES 23 A 432 VAL VAL ALA ALA ASP ILE LYS ARG ALA TYR TRP GLY ASP SEQRES 24 A 432 VAL MET ASP SER MET ASN VAL ALA PHE ILE SER GLN LEU SEQRES 25 A 432 GLY GLY ILE ASP VAL ALA LEU PRO HIS ARG TYR GLN ASP SEQRES 26 A 432 ILE THR VAL ALA SER ILE GLY THR ALA TYR LYS TYR ASN SEQRES 27 A 432 ASN ASP LEU THR LEU ARG ALA GLY TYR SER TYR ALA GLN SEQRES 28 A 432 GLN ALA LEU ASP SER GLU LEU ILE LEU PRO VAL ILE PRO SEQRES 29 A 432 ALA TYR LEU LYS ARG HIS VAL THR PHE GLY GLY GLU TYR SEQRES 30 A 432 ASP PHE ASP LYS ASP SER ARG ILE ASN LEU ALA ILE SER SEQRES 31 A 432 PHE GLY LEU ARG GLU ARG VAL GLN THR PRO SER TYR LEU SEQRES 32 A 432 ALA GLY THR GLU MET LEU ARG GLN SER HIS SER GLN ILE SEQRES 33 A 432 ASN ALA VAL VAL SER TYR SER LYS ASN PHE HIS HIS HIS SEQRES 34 A 432 HIS HIS HIS HELIX 1 AA1 GLY A 10 MET A 16 1 7 HELIX 2 AA2 GLY A 26 ILE A 31 5 6 HELIX 3 AA3 ASN A 33 ALA A 40 5 8 HELIX 4 AA4 SER A 106 GLN A 110 5 5 HELIX 5 AA5 SER A 163 GLN A 172 1 10 HELIX 6 AA6 GLY A 178 ALA A 184 1 7 HELIX 7 AA7 VAL A 187 GLY A 190 5 4 SHEET 1 A17 PHE A 94 GLY A 103 0 SHEET 2 A17 ASN A 121 ARG A 129 -1 SHEET 3 A17 LEU A 142 GLU A 158 -1 SHEET 4 A17 ASP A 208 THR A 223 -1 SHEET 5 A17 THR A 226 ASN A 233 -1 SHEET 6 A17 ALA A 272 HIS A 280 -1 SHEET 7 A17 TRP A 286 TYR A 296 -1 SHEET 8 A17 ASP A 325 LYS A 336 -1 SHEET 9 A17 THR A 342 GLN A 352 -1 SHEET 10 A17 HIS A 370 ASP A 378 -1 SHEET 11 A17 SER A 383 GLY A 392 -1 SHEET 12 A17 GLN A 415 LYS A 424 -1 SHEET 13 A17 ASN A 44 THR A 55 -1 SHEET 14 A17 TYR A 72 LEU A 84 -1 SHEET 15 A17 TRP A 87 LEU A 93 -1 SHEET 16 A17 PRO A 131 GLN A 137 -1 SHEET 17 A17 THR A 143 ASP A 149 -1 SHEET 1 B 2 ILE A 57 VAL A 59 0 SHEET 2 B 2 PRO A 67 SER A 69 -1 SHEET 1 C 4 LEU A 157 PRO A 162 0 SHEET 2 C 4 ALA A 192 LEU A 197 -1 SHEET 3 C 4 SER A 248 ILE A 250 -1 SHEET 4 C 4 VAL A 256 PRO A 258 -1 SHEET 1 D 4 LEU A 241 ALA A 245 0 SHEET 2 D 4 GLY A 261 LYS A 266 -1 SHEET 3 D 4 SER A 303 ILE A 309 -1 SHEET 4 D 4 ILE A 315 PRO A 320 -1 SHEET 1 E 2 GLU A 395 VAL A 397 0 SHEET 2 E 2 GLN A 411 HIS A 413 -1 CRYST1 80.107 115.928 172.807 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012483 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008626 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005787 0.00000