HEADER SIGNALING PROTEIN 20-MAY-20 6Z3J TITLE REPULSIVE GUIDANCE MOLECULE B (RGMB) IN COMPLEX WITH GROWTH TITLE 2 DIFFERENTIATION FACTOR 5 (GDF5) (CRYSTAL FORM 1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH/DIFFERENTIATION FACTOR 5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GDF-5,BONE MORPHOGENETIC PROTEIN 14,BMP-14,CARTILAGE-DERIVED COMPND 5 MORPHOGENETIC PROTEIN 1,CDMP-1,LIPOPOLYSACCHARIDE-ASSOCIATED PROTEIN COMPND 6 4,LPS-ASSOCIATED PROTEIN 4,RADOTERMIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RGM DOMAIN FAMILY MEMBER B; COMPND 11 CHAIN: C, D; COMPND 12 SYNONYM: DRG11-RESPONSIVE AXONAL GUIDANCE AND OUTGROWTH OF NEURITE, COMPND 13 DRAGON; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GDF5, BMP14, CDMP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: RGMB; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 17 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-11268 KEYWDS REPULSIVE GUIDANCE MOLECULE, RGM, BONE MORPHOGENETIC PROTEIN, BMP, KEYWDS 2 GROWTH DIFFERENTIATION FACTOR 5, GDF5, NEOGENIN, AXON GUIDANCE, KEYWDS 3 TGFBETA SIGNALLING, BRAIN DEVELOPMENT, IRON METABOLISM., SIGNALING KEYWDS 4 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.MALINAUSKAS,T.V.PEER,B.BISHOP,T.D.MULLER,C.SIEBOLD REVDAT 5 24-JAN-24 6Z3J 1 HETSYN REVDAT 4 29-JUL-20 6Z3J 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 15-JUL-20 6Z3J 1 JRNL REVDAT 2 08-JUL-20 6Z3J 1 JRNL REVDAT 1 01-JUL-20 6Z3J 0 JRNL AUTH T.MALINAUSKAS,T.V.PEER,B.BISHOP,T.D.MUELLER,C.SIEBOLD JRNL TITL REPULSIVE GUIDANCE MOLECULES LOCK GROWTH DIFFERENTIATION JRNL TITL 2 FACTOR 5 IN AN INHIBITORY COMPLEX. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 15620 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32576689 JRNL DOI 10.1073/PNAS.2000561117 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13RC2_2986: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 42900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2173 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3800 - 4.1563 1.00 2579 150 0.1676 0.1794 REMARK 3 2 4.1563 - 3.2995 1.00 2550 148 0.1612 0.1821 REMARK 3 3 3.2995 - 2.8826 1.00 2597 126 0.1724 0.2013 REMARK 3 4 2.8826 - 2.6191 1.00 2564 125 0.1802 0.2283 REMARK 3 5 2.6191 - 2.4314 1.00 2558 136 0.1750 0.1934 REMARK 3 6 2.4314 - 2.2881 1.00 2547 157 0.1757 0.2215 REMARK 3 7 2.2881 - 2.1735 1.00 2564 130 0.1797 0.2284 REMARK 3 8 2.1735 - 2.0789 1.00 2546 131 0.1858 0.2574 REMARK 3 9 2.0789 - 1.9988 1.00 2536 154 0.2049 0.2593 REMARK 3 10 1.9988 - 1.9299 1.00 2532 154 0.2195 0.2518 REMARK 3 11 1.9299 - 1.8695 1.00 2588 141 0.2581 0.2750 REMARK 3 12 1.8695 - 1.8161 1.00 2495 130 0.2968 0.3944 REMARK 3 13 1.8161 - 1.7683 0.99 2567 127 0.3244 0.3503 REMARK 3 14 1.7683 - 1.7251 0.99 2541 122 0.3640 0.3918 REMARK 3 15 1.7251 - 1.6859 0.99 2585 118 0.3965 0.4006 REMARK 3 16 1.6859 - 1.6500 0.95 2378 124 0.4799 0.5630 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2936 REMARK 3 ANGLE : 0.855 3979 REMARK 3 CHIRALITY : 0.047 442 REMARK 3 PLANARITY : 0.005 516 REMARK 3 DIHEDRAL : 12.346 1820 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 5.2767 13.9705 21.1592 REMARK 3 T TENSOR REMARK 3 T11: 0.3965 T22: 0.2418 REMARK 3 T33: 0.2393 T12: -0.0094 REMARK 3 T13: -0.0025 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.2480 L22: 4.7856 REMARK 3 L33: 0.7524 L12: -2.3508 REMARK 3 L13: -0.5029 L23: 0.9145 REMARK 3 S TENSOR REMARK 3 S11: -0.0774 S12: -0.0437 S13: -0.0073 REMARK 3 S21: 0.1464 S22: 0.0658 S23: 0.0559 REMARK 3 S31: 0.0723 S32: 0.0269 S33: 0.0268 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 3.6567 29.7916 15.6723 REMARK 3 T TENSOR REMARK 3 T11: 0.3714 T22: 0.2545 REMARK 3 T33: 0.2501 T12: -0.0139 REMARK 3 T13: 0.0171 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 0.0815 L22: 5.8666 REMARK 3 L33: 1.1919 L12: 0.4984 REMARK 3 L13: 0.2347 L23: 1.9344 REMARK 3 S TENSOR REMARK 3 S11: -0.0342 S12: 0.0247 S13: 0.0066 REMARK 3 S21: -0.1942 S22: 0.0008 S23: 0.0245 REMARK 3 S31: -0.0805 S32: 0.0201 S33: 0.0288 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 3.3044 5.8899 -1.6179 REMARK 3 T TENSOR REMARK 3 T11: 0.5282 T22: 0.2612 REMARK 3 T33: 0.2610 T12: 0.0150 REMARK 3 T13: 0.0493 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 6.9810 L22: 2.8294 REMARK 3 L33: 6.3003 L12: -0.2478 REMARK 3 L13: 1.4186 L23: -1.5221 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: 0.3176 S13: -0.1370 REMARK 3 S21: -0.2508 S22: 0.0330 S23: 0.1394 REMARK 3 S31: 0.1924 S32: -0.3579 S33: -0.0501 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -7.8285 35.6768 36.5128 REMARK 3 T TENSOR REMARK 3 T11: 0.5263 T22: 0.2439 REMARK 3 T33: 0.2313 T12: 0.0361 REMARK 3 T13: 0.0070 T23: -0.0294 REMARK 3 L TENSOR REMARK 3 L11: 7.1065 L22: 3.2736 REMARK 3 L33: 4.2661 L12: 0.4446 REMARK 3 L13: -0.9216 L23: -1.8667 REMARK 3 S TENSOR REMARK 3 S11: -0.0037 S12: -0.2496 S13: -0.0194 REMARK 3 S21: 0.1989 S22: 0.0622 S23: 0.1412 REMARK 3 S31: -0.1603 S32: -0.2641 S33: -0.0528 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Z3J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108832. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43071 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 39.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6Z3H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LI2SO4, 0.1 M HEPES PH 7.5, 25% REMARK 280 V/V PEG 3350., PH 7.4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 63.87500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 385 REMARK 465 LYS A 386 REMARK 465 ARG A 387 REMARK 465 GLN A 388 REMARK 465 GLY A 389 REMARK 465 LYS A 390 REMARK 465 ARG A 391 REMARK 465 PRO A 392 REMARK 465 SER A 393 REMARK 465 LYS A 394 REMARK 465 ASN A 395 REMARK 465 LEU A 396 REMARK 465 MET B 385 REMARK 465 LYS B 386 REMARK 465 ARG B 387 REMARK 465 GLN B 388 REMARK 465 GLY B 389 REMARK 465 LYS B 390 REMARK 465 ARG B 391 REMARK 465 PRO B 392 REMARK 465 SER B 393 REMARK 465 LYS B 394 REMARK 465 ASN B 395 REMARK 465 GLU C 50 REMARK 465 THR C 51 REMARK 465 GLY C 52 REMARK 465 SER C 128 REMARK 465 SER C 129 REMARK 465 THR C 130 REMARK 465 ASN C 131 REMARK 465 PRO C 132 REMARK 465 GLU C 133 REMARK 465 VAL C 134 REMARK 465 THR C 135 REMARK 465 HIS C 136 REMARK 465 GLY C 137 REMARK 465 THR C 138 REMARK 465 LYS C 139 REMARK 465 HIS C 140 REMARK 465 HIS C 141 REMARK 465 HIS C 142 REMARK 465 HIS C 143 REMARK 465 HIS C 144 REMARK 465 HIS C 145 REMARK 465 GLU D 50 REMARK 465 THR D 51 REMARK 465 SER D 128 REMARK 465 SER D 129 REMARK 465 THR D 130 REMARK 465 ASN D 131 REMARK 465 PRO D 132 REMARK 465 GLU D 133 REMARK 465 VAL D 134 REMARK 465 THR D 135 REMARK 465 HIS D 136 REMARK 465 GLY D 137 REMARK 465 THR D 138 REMARK 465 LYS D 139 REMARK 465 HIS D 140 REMARK 465 HIS D 141 REMARK 465 HIS D 142 REMARK 465 HIS D 143 REMARK 465 HIS D 144 REMARK 465 HIS D 145 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 427 168.55 62.71 REMARK 500 PHE B 427 168.78 59.98 REMARK 500 GLU B 442 73.27 34.35 REMARK 500 ASP B 457 85.35 -156.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6Z3G RELATED DB: PDB REMARK 900 3Z3G CONTAINS RGMA IN COMPLEX WITH GDF5 REMARK 900 RELATED ID: 6Z3H RELATED DB: PDB REMARK 900 6Z3H CONTAINS RGMB IN COMPLEX WITH GDF5 (CRYSTAL FORM 2) DBREF 6Z3J A 387 501 UNP P43026 GDF5_HUMAN 387 501 DBREF 6Z3J B 387 501 UNP P43026 GDF5_HUMAN 387 501 DBREF 6Z3J C 53 136 UNP Q6NW40 RGMB_HUMAN 53 136 DBREF 6Z3J D 53 136 UNP Q6NW40 RGMB_HUMAN 53 136 SEQADV 6Z3J MET A 385 UNP P43026 INITIATING METHIONINE SEQADV 6Z3J LYS A 386 UNP P43026 EXPRESSION TAG SEQADV 6Z3J LYS A 487 UNP P43026 TYR 487 ENGINEERED MUTATION SEQADV 6Z3J ASP A 489 UNP P43026 GLN 489 ENGINEERED MUTATION SEQADV 6Z3J MET B 385 UNP P43026 INITIATING METHIONINE SEQADV 6Z3J LYS B 386 UNP P43026 EXPRESSION TAG SEQADV 6Z3J LYS B 487 UNP P43026 TYR 487 ENGINEERED MUTATION SEQADV 6Z3J ASP B 489 UNP P43026 GLN 489 ENGINEERED MUTATION SEQADV 6Z3J GLU C 50 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J THR C 51 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J GLY C 52 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J GLY C 137 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J THR C 138 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J LYS C 139 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J HIS C 140 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J HIS C 141 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J HIS C 142 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J HIS C 143 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J HIS C 144 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J HIS C 145 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J GLU D 50 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J THR D 51 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J GLY D 52 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J GLY D 137 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J THR D 138 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J LYS D 139 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J HIS D 140 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J HIS D 141 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J HIS D 142 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J HIS D 143 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J HIS D 144 UNP Q6NW40 EXPRESSION TAG SEQADV 6Z3J HIS D 145 UNP Q6NW40 EXPRESSION TAG SEQRES 1 A 117 MET LYS ARG GLN GLY LYS ARG PRO SER LYS ASN LEU LYS SEQRES 2 A 117 ALA ARG CYS SER ARG LYS ALA LEU HIS VAL ASN PHE LYS SEQRES 3 A 117 ASP MET GLY TRP ASP ASP TRP ILE ILE ALA PRO LEU GLU SEQRES 4 A 117 TYR GLU ALA PHE HIS CYS GLU GLY LEU CYS GLU PHE PRO SEQRES 5 A 117 LEU ARG SER HIS LEU GLU PRO THR ASN HIS ALA VAL ILE SEQRES 6 A 117 GLN THR LEU MET ASN SER MET ASP PRO GLU SER THR PRO SEQRES 7 A 117 PRO THR CYS CYS VAL PRO THR ARG LEU SER PRO ILE SER SEQRES 8 A 117 ILE LEU PHE ILE ASP SER ALA ASN ASN VAL VAL LYS LYS SEQRES 9 A 117 ASP TYR GLU ASP MET VAL VAL GLU SER CYS GLY CYS ARG SEQRES 1 B 117 MET LYS ARG GLN GLY LYS ARG PRO SER LYS ASN LEU LYS SEQRES 2 B 117 ALA ARG CYS SER ARG LYS ALA LEU HIS VAL ASN PHE LYS SEQRES 3 B 117 ASP MET GLY TRP ASP ASP TRP ILE ILE ALA PRO LEU GLU SEQRES 4 B 117 TYR GLU ALA PHE HIS CYS GLU GLY LEU CYS GLU PHE PRO SEQRES 5 B 117 LEU ARG SER HIS LEU GLU PRO THR ASN HIS ALA VAL ILE SEQRES 6 B 117 GLN THR LEU MET ASN SER MET ASP PRO GLU SER THR PRO SEQRES 7 B 117 PRO THR CYS CYS VAL PRO THR ARG LEU SER PRO ILE SER SEQRES 8 B 117 ILE LEU PHE ILE ASP SER ALA ASN ASN VAL VAL LYS LYS SEQRES 9 B 117 ASP TYR GLU ASP MET VAL VAL GLU SER CYS GLY CYS ARG SEQRES 1 C 96 GLU THR GLY GLN CYS ARG ILE GLN LYS CYS THR THR ASP SEQRES 2 C 96 PHE VAL SER LEU THR SER HIS LEU ASN SER ALA VAL ASP SEQRES 3 C 96 GLY PHE ASP SER GLU PHE CYS LYS ALA LEU ARG ALA TYR SEQRES 4 C 96 ALA GLY CYS THR GLN ARG THR SER LYS ALA CYS ARG GLY SEQRES 5 C 96 ASN LEU VAL TYR HIS SER ALA VAL LEU GLY ILE SER ASP SEQRES 6 C 96 LEU MET SER GLN ARG ASN CYS SER LYS ASP GLY PRO THR SEQRES 7 C 96 SER SER THR ASN PRO GLU VAL THR HIS GLY THR LYS HIS SEQRES 8 C 96 HIS HIS HIS HIS HIS SEQRES 1 D 96 GLU THR GLY GLN CYS ARG ILE GLN LYS CYS THR THR ASP SEQRES 2 D 96 PHE VAL SER LEU THR SER HIS LEU ASN SER ALA VAL ASP SEQRES 3 D 96 GLY PHE ASP SER GLU PHE CYS LYS ALA LEU ARG ALA TYR SEQRES 4 D 96 ALA GLY CYS THR GLN ARG THR SER LYS ALA CYS ARG GLY SEQRES 5 D 96 ASN LEU VAL TYR HIS SER ALA VAL LEU GLY ILE SER ASP SEQRES 6 D 96 LEU MET SER GLN ARG ASN CYS SER LYS ASP GLY PRO THR SEQRES 7 D 96 SER SER THR ASN PRO GLU VAL THR HIS GLY THR LYS HIS SEQRES 8 D 96 HIS HIS HIS HIS HIS HET SO4 A 601 5 HET GOL A 602 6 HET EDO B 601 4 HET GOL B 602 6 HET CL B 603 1 HET SO4 C 201 5 HET EDO C 202 4 HET CL C 203 1 HET NAG D 201 14 HET EDO D 202 4 HET CL D 203 1 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 7 EDO 3(C2 H6 O2) FORMUL 9 CL 3(CL 1-) FORMUL 13 NAG C8 H15 N O6 FORMUL 16 HOH *142(H2 O) HELIX 1 AA1 GLY A 413 ASP A 416 5 4 HELIX 2 AA2 ARG A 438 GLU A 442 5 5 HELIX 3 AA3 THR A 444 ASP A 457 1 14 HELIX 4 AA4 GLY B 413 ASP B 416 5 4 HELIX 5 AA5 ARG B 438 GLU B 442 5 5 HELIX 6 AA6 THR B 444 ASP B 457 1 14 HELIX 7 AA7 ARG C 55 SER C 68 1 14 HELIX 8 AA8 GLY C 76 THR C 95 1 20 HELIX 9 AA9 THR C 95 ARG C 100 1 6 HELIX 10 AB1 ASN C 102 ARG C 119 1 18 HELIX 11 AB2 ARG D 55 SER D 68 1 14 HELIX 12 AB3 GLY D 76 ARG D 94 1 19 HELIX 13 AB4 ASN D 102 ARG D 119 1 18 SHEET 1 AA1 2 SER A 401 LYS A 403 0 SHEET 2 AA1 2 HIS A 428 GLU A 430 -1 O HIS A 428 N LYS A 403 SHEET 1 AA2 2 HIS A 406 ASN A 408 0 SHEET 2 AA2 2 GLU A 423 GLU A 425 -1 O TYR A 424 N VAL A 407 SHEET 1 AA3 3 ILE A 418 ALA A 420 0 SHEET 2 AA3 3 CYS A 466 ILE A 479 -1 O LEU A 477 N ALA A 420 SHEET 3 AA3 3 VAL A 485 CYS A 500 -1 O VAL A 486 N PHE A 478 SHEET 1 AA4 2 SER B 401 LYS B 403 0 SHEET 2 AA4 2 HIS B 428 GLU B 430 -1 O HIS B 428 N LYS B 403 SHEET 1 AA5 2 HIS B 406 ASN B 408 0 SHEET 2 AA5 2 GLU B 423 GLU B 425 -1 O TYR B 424 N VAL B 407 SHEET 1 AA6 3 ILE B 418 ALA B 420 0 SHEET 2 AA6 3 CYS B 466 ILE B 479 -1 O LEU B 477 N ALA B 420 SHEET 3 AA6 3 VAL B 485 CYS B 500 -1 O TYR B 490 N ILE B 474 SSBOND 1 CYS A 400 CYS A 466 1555 1555 2.04 SSBOND 2 CYS A 429 CYS A 498 1555 1555 2.03 SSBOND 3 CYS A 433 CYS A 500 1555 1555 2.03 SSBOND 4 CYS A 465 CYS B 465 1555 1555 2.03 SSBOND 5 CYS B 400 CYS B 466 1555 1555 2.04 SSBOND 6 CYS B 429 CYS B 498 1555 1555 2.03 SSBOND 7 CYS B 433 CYS B 500 1555 1555 2.02 SSBOND 8 CYS C 54 CYS C 99 1555 1555 2.05 SSBOND 9 CYS C 59 CYS C 91 1555 1555 2.06 SSBOND 10 CYS C 82 CYS C 121 1555 1555 2.04 SSBOND 11 CYS D 54 CYS D 99 1555 1555 2.04 SSBOND 12 CYS D 59 CYS D 91 1555 1555 2.06 SSBOND 13 CYS D 82 CYS D 121 1555 1555 2.03 LINK ND2 ASN D 120 C1 NAG D 201 1555 1555 1.43 CISPEP 1 ALA A 420 PRO A 421 0 -11.58 CISPEP 2 PHE A 435 PRO A 436 0 -5.51 CISPEP 3 ALA B 420 PRO B 421 0 -7.79 CISPEP 4 PHE B 435 PRO B 436 0 -5.96 CRYST1 36.480 127.750 39.910 90.00 99.32 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027412 0.000000 0.004499 0.00000 SCALE2 0.000000 0.007828 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025392 0.00000