HEADER SIGNALING PROTEIN 20-MAY-20 6Z3L TITLE REPULSIVE GUIDANCE MOLECULE C (RGMC, HEMOJUVELIN, HJV, HFE2) IN TITLE 2 COMPLEX WITH GROWTH DIFFERENTIATION FACTOR 5 (GDF5) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH/DIFFERENTIATION FACTOR 5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GDF-5,BONE MORPHOGENETIC PROTEIN 14,BMP-14,CARTILAGE-DERIVED COMPND 5 MORPHOGENETIC PROTEIN 1,CDMP-1,LIPOPOLYSACCHARIDE-ASSOCIATED PROTEIN COMPND 6 4,LPS-ASSOCIATED PROTEIN 4,RADOTERMIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HEMOJUVELIN; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: HEMOCHROMATOSIS TYPE 2 PROTEIN,HEMOJUVELIN BMP CORECEPTOR, COMPND 12 RGM DOMAIN FAMILY MEMBER C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GDF5, BMP14, CDMP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: HJV, HFE2, RGMC; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 17 EXPRESSION_SYSTEM_ATCC_NUMBER: CRL-11268 KEYWDS REPULSIVE GUIDANCE MOLECULE, RGM, BONE MORPHOGENETIC PROTEIN, BMP, KEYWDS 2 GROWTH DIFFERENTIATION FACTOR 5, GDF5, NEOGENIN, AXON GUIDANCE, KEYWDS 3 TGFBETA SIGNALLING, BRAIN DEVELOPMENT, IRON METABOLISM, HEMOJUVELIN, KEYWDS 4 HJV, HFE2, HEMOCHROMATOSIS TYPE 2 PROTEIN, JUVENILE KEYWDS 5 HEMOCHROMATOSIS., SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.MALINAUSKAS,T.V.PEER,B.BISHOP,T.D.MULLER,C.SIEBOLD REVDAT 4 24-JAN-24 6Z3L 1 SSBOND REVDAT 3 15-JUL-20 6Z3L 1 JRNL REVDAT 2 08-JUL-20 6Z3L 1 JRNL REVDAT 1 01-JUL-20 6Z3L 0 JRNL AUTH T.MALINAUSKAS,T.V.PEER,B.BISHOP,T.D.MUELLER,C.SIEBOLD JRNL TITL REPULSIVE GUIDANCE MOLECULES LOCK GROWTH DIFFERENTIATION JRNL TITL 2 FACTOR 5 IN AN INHIBITORY COMPLEX. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 15620 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32576689 JRNL DOI 10.1073/PNAS.2000561117 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13RC2_2986: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.8 REMARK 3 NUMBER OF REFLECTIONS : 8883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 85.5800 - 3.6250 1.00 3363 198 0.2112 0.2417 REMARK 3 2 3.6250 - 2.8772 0.99 3170 170 0.2661 0.3004 REMARK 3 3 2.8772 - 2.5134 0.60 1879 103 0.3644 0.3646 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1264 REMARK 3 ANGLE : 0.386 1721 REMARK 3 CHIRALITY : 0.037 191 REMARK 3 PLANARITY : 0.002 223 REMARK 3 DIHEDRAL : 13.778 779 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 397 THROUGH 501) REMARK 3 ORIGIN FOR THE GROUP (A): -44.7198 25.8508 6.9237 REMARK 3 T TENSOR REMARK 3 T11: 0.4427 T22: 0.2491 REMARK 3 T33: 0.2163 T12: 0.0512 REMARK 3 T13: 0.0090 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 6.5809 L22: 2.7915 REMARK 3 L33: 3.1276 L12: 2.5127 REMARK 3 L13: 2.3730 L23: 1.3126 REMARK 3 S TENSOR REMARK 3 S11: 0.0867 S12: -0.2853 S13: -0.3893 REMARK 3 S21: -0.0106 S22: 0.0420 S23: 0.0293 REMARK 3 S31: 0.4526 S32: -0.1808 S33: -0.1370 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 36 THROUGH 120) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7932 24.0529 -6.0867 REMARK 3 T TENSOR REMARK 3 T11: 1.9918 T22: 2.2658 REMARK 3 T33: 1.4792 T12: 0.3208 REMARK 3 T13: -0.0103 T23: -0.1795 REMARK 3 L TENSOR REMARK 3 L11: 4.8420 L22: 1.4159 REMARK 3 L33: 0.7255 L12: 0.5672 REMARK 3 L13: -1.0140 L23: 0.6338 REMARK 3 S TENSOR REMARK 3 S11: -0.5747 S12: -1.1818 S13: -0.7815 REMARK 3 S21: 0.6991 S22: 0.7820 S23: -1.3855 REMARK 3 S31: 0.8679 S32: 0.6189 S33: -0.1869 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Z3L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108833. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10324 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 85.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 47.80 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4UI1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M LICL, 0.1 M CITRIC ACID PH 4.0, 8% REMARK 280 GAMMA-BUTYROLACTONE., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.15333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.07667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.15333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.07667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 66.15333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 33.07667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 66.15333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 33.07667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -98.82000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 609 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 385 REMARK 465 LYS A 386 REMARK 465 ARG A 387 REMARK 465 GLN A 388 REMARK 465 GLY A 389 REMARK 465 LYS A 390 REMARK 465 ARG A 391 REMARK 465 PRO A 392 REMARK 465 SER A 393 REMARK 465 LYS A 394 REMARK 465 ASN A 395 REMARK 465 LEU A 396 REMARK 465 GLU B 33 REMARK 465 THR B 34 REMARK 465 GLY B 35 REMARK 465 VAL B 47 REMARK 465 SER B 48 REMARK 465 SER B 49 REMARK 465 THR B 50 REMARK 465 LEU B 51 REMARK 465 SER B 52 REMARK 465 LEU B 53 REMARK 465 ARG B 54 REMARK 465 GLY B 55 REMARK 465 GLY B 56 REMARK 465 GLY B 57 REMARK 465 SER B 58 REMARK 465 SER B 59 REMARK 465 GLY B 60 REMARK 465 ALA B 61 REMARK 465 LEU B 62 REMARK 465 ARG B 63 REMARK 465 GLY B 64 REMARK 465 GLY B 65 REMARK 465 GLY B 66 REMARK 465 GLY B 67 REMARK 465 GLY B 68 REMARK 465 GLY B 69 REMARK 465 ARG B 70 REMARK 465 GLY B 71 REMARK 465 GLY B 72 REMARK 465 GLY B 73 REMARK 465 VAL B 74 REMARK 465 GLY B 75 REMARK 465 SER B 76 REMARK 465 GLY B 77 REMARK 465 GLY B 78 REMARK 465 LEU B 79 REMARK 465 ARG B 121 REMARK 465 GLN B 122 REMARK 465 GLY B 123 REMARK 465 PRO B 124 REMARK 465 THR B 125 REMARK 465 ALA B 126 REMARK 465 PRO B 127 REMARK 465 PRO B 128 REMARK 465 PRO B 129 REMARK 465 PRO B 130 REMARK 465 ARG B 131 REMARK 465 GLY B 132 REMARK 465 PRO B 133 REMARK 465 ALA B 134 REMARK 465 LEU B 135 REMARK 465 PRO B 136 REMARK 465 GLY B 137 REMARK 465 ALA B 138 REMARK 465 GLY B 139 REMARK 465 SER B 140 REMARK 465 GLY B 141 REMARK 465 LEU B 142 REMARK 465 PRO B 143 REMARK 465 ALA B 144 REMARK 465 PRO B 145 REMARK 465 GLY B 146 REMARK 465 THR B 147 REMARK 465 LYS B 148 REMARK 465 HIS B 149 REMARK 465 HIS B 150 REMARK 465 HIS B 151 REMARK 465 HIS B 152 REMARK 465 HIS B 153 REMARK 465 HIS B 154 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 397 CD CE NZ REMARK 470 LYS A 410 CG CD CE NZ REMARK 470 SER B 85 OG REMARK 470 ARG B 92 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 95 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 116 CG CD OE1 NE2 REMARK 470 SER B 120 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 405 91.78 -160.10 REMARK 500 LEU A 405 91.81 -160.10 REMARK 500 PHE A 427 173.73 61.93 REMARK 500 SER A 460 -71.07 -78.68 REMARK 500 LYS B 38 50.95 -107.21 REMARK 500 HIS B 117 -109.42 57.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6Z3G RELATED DB: PDB REMARK 900 6Z3G CONTAINS RGMA IN COMPLEX WITH GDF5 REMARK 900 RELATED ID: 6Z3H RELATED DB: PDB REMARK 900 6Z3H CONTAINS RGMB IN COMPLEX WITH GDF5 (CRYSTAL FORM 2) REMARK 900 RELATED ID: 6Z3J RELATED DB: PDB REMARK 900 6Z3J CONTAINS RGMB IN COMPLEX WITH GDF5 (CRYSTAL FORM 1) DBREF 6Z3L A 387 501 UNP P43026 GDF5_HUMAN 387 501 DBREF 6Z3L B 36 145 UNP Q6ZVN8 RGMC_HUMAN 36 145 SEQADV 6Z3L MET A 385 UNP P43026 INITIATING METHIONINE SEQADV 6Z3L LYS A 386 UNP P43026 EXPRESSION TAG SEQADV 6Z3L GLU B 33 UNP Q6ZVN8 EXPRESSION TAG SEQADV 6Z3L THR B 34 UNP Q6ZVN8 EXPRESSION TAG SEQADV 6Z3L GLY B 35 UNP Q6ZVN8 EXPRESSION TAG SEQADV 6Z3L GLY B 146 UNP Q6ZVN8 EXPRESSION TAG SEQADV 6Z3L THR B 147 UNP Q6ZVN8 EXPRESSION TAG SEQADV 6Z3L LYS B 148 UNP Q6ZVN8 EXPRESSION TAG SEQADV 6Z3L HIS B 149 UNP Q6ZVN8 EXPRESSION TAG SEQADV 6Z3L HIS B 150 UNP Q6ZVN8 EXPRESSION TAG SEQADV 6Z3L HIS B 151 UNP Q6ZVN8 EXPRESSION TAG SEQADV 6Z3L HIS B 152 UNP Q6ZVN8 EXPRESSION TAG SEQADV 6Z3L HIS B 153 UNP Q6ZVN8 EXPRESSION TAG SEQADV 6Z3L HIS B 154 UNP Q6ZVN8 EXPRESSION TAG SEQRES 1 A 117 MET LYS ARG GLN GLY LYS ARG PRO SER LYS ASN LEU LYS SEQRES 2 A 117 ALA ARG CYS SER ARG LYS ALA LEU HIS VAL ASN PHE LYS SEQRES 3 A 117 ASP MET GLY TRP ASP ASP TRP ILE ILE ALA PRO LEU GLU SEQRES 4 A 117 TYR GLU ALA PHE HIS CYS GLU GLY LEU CYS GLU PHE PRO SEQRES 5 A 117 LEU ARG SER HIS LEU GLU PRO THR ASN HIS ALA VAL ILE SEQRES 6 A 117 GLN THR LEU MET ASN SER MET ASP PRO GLU SER THR PRO SEQRES 7 A 117 PRO THR CYS CYS VAL PRO THR ARG LEU SER PRO ILE SER SEQRES 8 A 117 ILE LEU PHE ILE ASP SER ALA ASN ASN VAL VAL TYR LYS SEQRES 9 A 117 GLN TYR GLU ASP MET VAL VAL GLU SER CYS GLY CYS ARG SEQRES 1 B 122 GLU THR GLY GLN CYS LYS ILE LEU ARG CYS ASN ALA GLU SEQRES 2 B 122 TYR VAL SER SER THR LEU SER LEU ARG GLY GLY GLY SER SEQRES 3 B 122 SER GLY ALA LEU ARG GLY GLY GLY GLY GLY GLY ARG GLY SEQRES 4 B 122 GLY GLY VAL GLY SER GLY GLY LEU CYS ARG ALA LEU ARG SEQRES 5 B 122 SER TYR ALA LEU CYS THR ARG ARG THR ALA ARG THR CYS SEQRES 6 B 122 ARG GLY ASP LEU ALA PHE HIS SER ALA VAL HIS GLY ILE SEQRES 7 B 122 GLU ASP LEU MET ILE GLN HIS ASN CYS SER ARG GLN GLY SEQRES 8 B 122 PRO THR ALA PRO PRO PRO PRO ARG GLY PRO ALA LEU PRO SEQRES 9 B 122 GLY ALA GLY SER GLY LEU PRO ALA PRO GLY THR LYS HIS SEQRES 10 B 122 HIS HIS HIS HIS HIS FORMUL 3 HOH *12(H2 O) HELIX 1 AA1 LYS A 410 ASP A 416 5 7 HELIX 2 AA2 THR A 444 ASP A 457 1 14 HELIX 3 AA3 ILE B 39 ALA B 44 5 6 HELIX 4 AA4 ARG B 81 THR B 93 1 13 HELIX 5 AA5 ASP B 100 GLN B 116 1 17 SHEET 1 AA1 2 SER A 401 LYS A 403 0 SHEET 2 AA1 2 HIS A 428 GLU A 430 -1 O HIS A 428 N LYS A 403 SHEET 1 AA2 2 HIS A 406 ASN A 408 0 SHEET 2 AA2 2 GLU A 423 GLU A 425 -1 O TYR A 424 N VAL A 407 SHEET 1 AA3 3 ILE A 418 ALA A 420 0 SHEET 2 AA3 3 CYS A 466 ILE A 479 -1 O LEU A 477 N ALA A 420 SHEET 3 AA3 3 VAL A 485 CYS A 500 -1 O GLY A 499 N VAL A 467 SSBOND 1 CYS A 400 CYS A 466 1555 1555 2.03 SSBOND 2 CYS A 429 CYS A 498 1555 1555 2.03 SSBOND 3 CYS A 433 CYS A 500 1555 1555 2.03 SSBOND 4 CYS A 465 CYS A 465 1555 11455 2.03 SSBOND 5 CYS B 37 CYS B 97 1555 1555 2.03 SSBOND 6 CYS B 42 CYS B 89 1555 1555 2.03 SSBOND 7 CYS B 80 CYS B 119 1555 1555 2.03 CISPEP 1 ALA A 420 PRO A 421 0 -2.29 CISPEP 2 PHE A 435 PRO A 436 0 -1.31 CRYST1 98.820 98.820 99.230 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010119 0.005842 0.000000 0.00000 SCALE2 0.000000 0.011685 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010078 0.00000