HEADER TRANSFERASE 22-MAY-20 6Z45 TITLE CDK9-CYCLIN-T1 COMPLEX BOUND BY COMPOUND 24 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIN-DEPENDENT KINASE 9; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: C-2K,CELL DIVISION CYCLE 2-LIKE PROTEIN KINASE 4,CELL COMPND 5 DIVISION PROTEIN KINASE 9,SERINE/THREONINE-PROTEIN KINASE PITALRE, COMPND 6 TAT-ASSOCIATED KINASE COMPLEX CATALYTIC SUBUNIT; COMPND 7 EC: 2.7.11.22,2.7.11.23; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: CYCLIN-T1; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: CYCLIN-T; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDK9, CDC2L4, TAK; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: CCNT1; SOURCE 14 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 15 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS INHIBITOR, COMPLEX, KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.FERGUSON,G.W.COLLIE REVDAT 2 06-JAN-21 6Z45 1 JRNL REVDAT 1 23-DEC-20 6Z45 0 JRNL AUTH B.BARLAAM,R.CASELLA,J.CIDADO,C.COOK,C.DE SAVI,A.DISHINGTON, JRNL AUTH 2 C.S.DONALD,L.DREW,A.D.FERGUSON,D.FERGUSON,S.GLOSSOP,T.GREBE, JRNL AUTH 3 C.GU,S.HANDE,J.HAWKINS,A.W.HIRD,J.HOLMES,J.HORSTICK,Y.JIANG, JRNL AUTH 4 M.L.LAMB,T.M.MCGUIRE,J.E.MOORE,N.O'CONNELL,A.PIKE,K.G.PIKE, JRNL AUTH 5 T.PROIA,B.ROBERTS,M.SAN MARTIN,U.SARKAR,W.SHAO,D.STEAD, JRNL AUTH 6 N.SUMNER,K.THAKUR,M.M.VASBINDER,J.G.VARNES,J.WANG,L.WANG, JRNL AUTH 7 D.WU,L.WU,B.YANG,T.YAO JRNL TITL DISCOVERY OF AZD4573, A POTENT AND SELECTIVE INHIBITOR OF JRNL TITL 2 CDK9 THAT ENABLES SHORT DURATION OF TARGET ENGAGEMENT FOR JRNL TITL 3 THE TREATMENT OF HEMATOLOGICAL MALIGNANCIES. JRNL REF J.MED.CHEM. V. 63 15564 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 33306391 JRNL DOI 10.1021/ACS.JMEDCHEM.0C01754 REMARK 2 REMARK 2 RESOLUTION. 3.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.6 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 15062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.920 REMARK 3 FREE R VALUE TEST SET COUNT : 591 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.37 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.60 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.69 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2721 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2291 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2608 REMARK 3 BIN R VALUE (WORKING SET) : 0.2283 REMARK 3 BIN FREE R VALUE : 0.2452 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.15 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 113 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4603 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 130.3 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 160.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 15.88680 REMARK 3 B22 (A**2) : 15.88680 REMARK 3 B33 (A**2) : -31.77370 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.373 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.334 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4751 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6447 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1679 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 121 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 681 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4751 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 605 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5425 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.09 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.06 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.86 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -39.5157 -31.9045 8.4079 REMARK 3 T TENSOR REMARK 3 T11: -0.0965 T22: -0.1413 REMARK 3 T33: -0.1390 T12: 0.2954 REMARK 3 T13: -0.0186 T23: -0.0751 REMARK 3 L TENSOR REMARK 3 L11: 2.8267 L22: 2.7602 REMARK 3 L33: 6.2681 L12: 0.4010 REMARK 3 L13: -0.3598 L23: -0.9542 REMARK 3 S TENSOR REMARK 3 S11: -0.3809 S12: -0.2880 S13: 0.4701 REMARK 3 S21: 0.5901 S22: 0.4470 S23: 0.2491 REMARK 3 S31: -0.5922 S32: -1.1512 S33: -0.0661 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -7.7213 -20.5351 -10.8656 REMARK 3 T TENSOR REMARK 3 T11: -0.1562 T22: -0.2874 REMARK 3 T33: -0.1337 T12: -0.0874 REMARK 3 T13: -0.0535 T23: 0.0550 REMARK 3 L TENSOR REMARK 3 L11: 4.8536 L22: 4.1416 REMARK 3 L33: 2.2703 L12: 2.3575 REMARK 3 L13: -0.0691 L23: 0.6432 REMARK 3 S TENSOR REMARK 3 S11: 0.1288 S12: 0.2660 S13: -0.6722 REMARK 3 S21: 0.2629 S22: -0.1138 S23: -0.7438 REMARK 3 S31: 0.1260 S32: 0.2757 S33: -0.0149 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Z45 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108856. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100.000 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15063 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.370 REMARK 200 RESOLUTION RANGE LOW (A) : 85.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: INTERNAL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG1000, 100 MM SODIUM POTASSIUM REMARK 280 PHOSPHATE, PH 6.2, 500 MM NACL, 4 MM TCEP, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 85.88000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.58284 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.59667 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 85.88000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 49.58284 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.59667 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 85.88000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 49.58284 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.59667 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 99.16568 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 65.19333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 99.16568 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 65.19333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 99.16568 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 65.19333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 GLN A 4 REMARK 465 ALA A 89 REMARK 465 SER A 90 REMARK 465 PRO A 91 REMARK 465 TYR A 92 REMARK 465 ASN A 93 REMARK 465 ARG A 94 REMARK 465 ALA A 177 REMARK 465 LYS A 178 REMARK 465 ASN A 179 REMARK 465 SER A 180 REMARK 465 SER A 329 REMARK 465 THR A 330 REMARK 465 GLU B 2 REMARK 465 GLY B 3 REMARK 465 GLU B 4 REMARK 465 ARG B 5 REMARK 465 LYS B 6 REMARK 465 ASN B 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 6 -44.52 69.53 REMARK 500 ASP A 7 48.44 -141.28 REMARK 500 CYS A 10 70.84 -151.33 REMARK 500 THR A 29 -37.88 65.96 REMARK 500 GLU A 53 -98.16 -49.94 REMARK 500 ASP A 149 38.76 -149.59 REMARK 500 ASP A 167 81.63 57.13 REMARK 500 ARG A 184 68.23 -119.36 REMARK 500 VAL A 190 135.99 76.68 REMARK 500 ASP A 205 67.10 -112.87 REMARK 500 ARG A 225 15.98 58.18 REMARK 500 GLN A 230 66.91 -102.44 REMARK 500 ASN A 255 11.96 81.85 REMARK 500 ASP A 257 72.17 -64.05 REMARK 500 ASN A 258 -37.83 -138.23 REMARK 500 GLU A 260 -127.07 -136.99 REMARK 500 LEU A 261 -46.28 69.14 REMARK 500 LYS A 264 -131.51 45.59 REMARK 500 GLU A 266 95.08 -51.64 REMARK 500 ARG A 284 -47.66 71.46 REMARK 500 LEU A 296 49.38 -85.44 REMARK 500 LYS A 325 -12.09 -141.76 REMARK 500 THR B 121 1.36 -60.62 REMARK 500 LEU B 163 24.89 -74.33 REMARK 500 VAL B 164 -10.43 -142.37 REMARK 500 ASN B 250 -7.20 72.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q6E A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 302 DBREF 6Z45 A 1 330 UNP P50750 CDK9_HUMAN 1 330 DBREF 6Z45 B 2 259 UNP O60563 CCNT1_HUMAN 2 259 SEQADV 6Z45 ASP A 7 UNP P50750 SER 7 CONFLICT SEQADV 6Z45 ASN A 8 UNP P50750 VAL 8 CONFLICT SEQADV 6Z45 ARG A 44 UNP P50750 LYS 44 CONFLICT SEQADV 6Z45 PHE A 138 UNP P50750 TYR 138 CONFLICT SEQADV 6Z45 ASN A 181 UNP P50750 GLN 181 CONFLICT SEQADV 6Z45 ALA A 280 UNP P50750 LYS 280 CONFLICT SEQADV 6Z45 GLU A 307 UNP P50750 ASP 307 CONFLICT SEQADV 6Z45 GLU A 311 UNP P50750 ASN 311 CONFLICT SEQADV 6Z45 ALA B 26 UNP O60563 ARG 26 CONFLICT SEQADV 6Z45 ARG B 77 UNP O60563 GLN 77 CONFLICT SEQADV 6Z45 GLY B 96 UNP O60563 GLU 96 CONFLICT SEQADV 6Z45 ARG B 106 UNP O60563 LYS 106 CONFLICT SEQADV 6Z45 LEU B 241 UNP O60563 PHE 241 CONFLICT SEQRES 1 A 330 MET ALA LYS GLN TYR ASP ASP ASN GLU CYS PRO PHE CYS SEQRES 2 A 330 ASP GLU VAL SER LYS TYR GLU LYS LEU ALA LYS ILE GLY SEQRES 3 A 330 GLN GLY THR PHE GLY GLU VAL PHE LYS ALA ARG HIS ARG SEQRES 4 A 330 LYS THR GLY GLN ARG VAL ALA LEU LYS LYS VAL LEU MET SEQRES 5 A 330 GLU ASN GLU LYS GLU GLY PHE PRO ILE THR ALA LEU ARG SEQRES 6 A 330 GLU ILE LYS ILE LEU GLN LEU LEU LYS HIS GLU ASN VAL SEQRES 7 A 330 VAL ASN LEU ILE GLU ILE CYS ARG THR LYS ALA SER PRO SEQRES 8 A 330 TYR ASN ARG CYS LYS GLY SER ILE TYR LEU VAL PHE ASP SEQRES 9 A 330 PHE CYS GLU HIS ASP LEU ALA GLY LEU LEU SER ASN VAL SEQRES 10 A 330 LEU VAL LYS PHE THR LEU SER GLU ILE LYS ARG VAL MET SEQRES 11 A 330 GLN MET LEU LEU ASN GLY LEU PHE TYR ILE HIS ARG ASN SEQRES 12 A 330 LYS ILE LEU HIS ARG ASP MET LYS ALA ALA ASN VAL LEU SEQRES 13 A 330 ILE THR ARG ASP GLY VAL LEU LYS LEU ALA ASP PHE GLY SEQRES 14 A 330 LEU ALA ARG ALA PHE SER LEU ALA LYS ASN SER ASN PRO SEQRES 15 A 330 ASN ARG TYR TPO ASN ARG VAL VAL THR LEU TRP TYR ARG SEQRES 16 A 330 PRO PRO GLU LEU LEU LEU GLY GLU ARG ASP TYR GLY PRO SEQRES 17 A 330 PRO ILE ASP LEU TRP GLY ALA GLY CYS ILE MET ALA GLU SEQRES 18 A 330 MET TRP THR ARG SER PRO ILE MET GLN GLY ASN THR GLU SEQRES 19 A 330 GLN HIS GLN LEU ALA LEU ILE SER GLN LEU CYS GLY SER SEQRES 20 A 330 ILE THR PRO GLU VAL TRP PRO ASN VAL ASP ASN TYR GLU SEQRES 21 A 330 LEU TYR GLU LYS LEU GLU LEU VAL LYS GLY GLN LYS ARG SEQRES 22 A 330 LYS VAL LYS ASP ARG LEU ALA ALA TYR VAL ARG ASP PRO SEQRES 23 A 330 TYR ALA LEU ASP LEU ILE ASP LYS LEU LEU VAL LEU ASP SEQRES 24 A 330 PRO ALA GLN ARG ILE ASP SER GLU ASP ALA LEU GLU HIS SEQRES 25 A 330 ASP PHE PHE TRP SER ASP PRO MET PRO SER ASP LEU LYS SEQRES 26 A 330 GLY MET LEU SER THR SEQRES 1 B 258 GLU GLY GLU ARG LYS ASN ASN ASN LYS ARG TRP TYR PHE SEQRES 2 B 258 THR ARG GLU GLN LEU GLU ASN SER PRO SER ARG ALA PHE SEQRES 3 B 258 GLY VAL ASP PRO ASP LYS GLU LEU SER TYR ARG GLN GLN SEQRES 4 B 258 ALA ALA ASN LEU LEU GLN ASP MET GLY GLN ARG LEU ASN SEQRES 5 B 258 VAL SER GLN LEU THR ILE ASN THR ALA ILE VAL TYR MET SEQRES 6 B 258 HIS ARG PHE TYR MET ILE GLN SER PHE THR ARG PHE PRO SEQRES 7 B 258 GLY ASN SER VAL ALA PRO ALA ALA LEU PHE LEU ALA ALA SEQRES 8 B 258 LYS VAL GLU GLY GLN PRO LYS LYS LEU GLU HIS VAL ILE SEQRES 9 B 258 ARG VAL ALA HIS THR CYS LEU HIS PRO GLN GLU SER LEU SEQRES 10 B 258 PRO ASP THR ARG SER GLU ALA TYR LEU GLN GLN VAL GLN SEQRES 11 B 258 ASP LEU VAL ILE LEU GLU SER ILE ILE LEU GLN THR LEU SEQRES 12 B 258 GLY PHE GLU LEU THR ILE ASP HIS PRO HIS THR HIS VAL SEQRES 13 B 258 VAL LYS CYS THR GLN LEU VAL ARG ALA SER LYS ASP LEU SEQRES 14 B 258 ALA GLN THR SER TYR PHE MET ALA THR ASN SER LEU HIS SEQRES 15 B 258 LEU THR THR PHE SER LEU GLN TYR THR PRO PRO VAL VAL SEQRES 16 B 258 ALA CYS VAL CYS ILE HIS LEU ALA CYS LYS TRP SER ASN SEQRES 17 B 258 TRP GLU ILE PRO VAL SER THR ASP GLY LYS HIS TRP TRP SEQRES 18 B 258 GLU TYR VAL ASP ALA THR VAL THR LEU GLU LEU LEU ASP SEQRES 19 B 258 GLU LEU THR HIS GLU LEU LEU GLN ILE LEU GLU LYS THR SEQRES 20 B 258 PRO ASN ARG LEU LYS ARG ILE TRP ASN TRP ARG MODRES 6Z45 TPO A 186 THR MODIFIED RESIDUE HET TPO A 186 11 HET Q6E A 401 30 HET TRS B 301 8 HET PO4 B 302 5 HETNAM TPO PHOSPHOTHREONINE HETNAM Q6E (1~{S},3~{R})-3-ACETAMIDO-~{N}-[5-CHLORANYL-4-(5,5- HETNAM 2 Q6E DIMETHYL-4,6-DIHYDROPYRROLO[1,2-B]PYRAZOL-3-YL) HETNAM 3 Q6E PYRIDIN-2-YL]CYCLOHEXANE-1-CARBOXAMIDE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM PO4 PHOSPHATE ION HETSYN TPO PHOSPHONOTHREONINE HETSYN TRS TRIS BUFFER FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 Q6E C22 H28 CL N5 O2 FORMUL 4 TRS C4 H12 N O3 1+ FORMUL 5 PO4 O4 P 3- HELIX 1 AA1 PRO A 60 LEU A 73 1 14 HELIX 2 AA2 LEU A 110 SER A 115 1 6 HELIX 3 AA3 THR A 122 ASN A 143 1 22 HELIX 4 AA4 LYS A 151 ALA A 153 5 3 HELIX 5 AA5 THR A 191 ARG A 195 5 5 HELIX 6 AA6 PRO A 196 LEU A 201 1 6 HELIX 7 AA7 PRO A 208 ARG A 225 1 18 HELIX 8 AA8 THR A 233 GLY A 246 1 14 HELIX 9 AA9 LYS A 274 ARG A 284 1 11 HELIX 10 AB1 ASP A 285 LEU A 296 1 12 HELIX 11 AB2 ASP A 305 HIS A 312 1 8 HELIX 12 AB3 ASP A 313 TRP A 316 5 4 HELIX 13 AB4 THR B 15 ASN B 21 1 7 HELIX 14 AB5 SER B 22 PHE B 27 1 6 HELIX 15 AB6 ASP B 30 ASN B 53 1 24 HELIX 16 AB7 SER B 55 TYR B 70 1 16 HELIX 17 AB8 PRO B 79 GLU B 95 1 17 HELIX 18 AB9 LYS B 100 HIS B 113 1 14 HELIX 19 AC1 SER B 123 LEU B 144 1 22 HELIX 20 AC2 PRO B 153 LEU B 163 1 11 HELIX 21 AC3 SER B 167 THR B 185 1 19 HELIX 22 AC4 THR B 186 GLN B 190 5 5 HELIX 23 AC5 THR B 192 ASN B 209 1 18 HELIX 24 AC6 HIS B 220 VAL B 225 5 6 HELIX 25 AC7 THR B 230 THR B 248 1 19 HELIX 26 AC8 ARG B 251 TRP B 256 5 6 SHEET 1 AA1 6 ASP A 14 GLU A 15 0 SHEET 2 AA1 6 LEU A 81 ARG A 86 1 O ARG A 86 N ASP A 14 SHEET 3 AA1 6 ILE A 99 ASP A 104 -1 O TYR A 100 N CYS A 85 SHEET 4 AA1 6 ARG A 44 LYS A 49 -1 N LYS A 48 O LEU A 101 SHEET 5 AA1 6 VAL A 33 HIS A 38 -1 N PHE A 34 O LEU A 47 SHEET 6 AA1 6 TYR A 19 GLY A 26 -1 N ALA A 23 O LYS A 35 SHEET 1 AA2 3 HIS A 108 ASP A 109 0 SHEET 2 AA2 3 VAL A 155 ILE A 157 -1 O ILE A 157 N HIS A 108 SHEET 3 AA2 3 LEU A 163 LEU A 165 -1 O LYS A 164 N LEU A 156 SHEET 1 AA3 2 ILE A 145 LEU A 146 0 SHEET 2 AA3 2 ARG A 172 ALA A 173 -1 O ARG A 172 N LEU A 146 LINK C TYR A 185 N TPO A 186 1555 1555 1.34 LINK C TPO A 186 N ASN A 187 1555 1555 1.36 CISPEP 1 ASP A 318 PRO A 319 0 -1.57 CISPEP 2 GLY A 326 MET A 327 0 4.03 CISPEP 3 MET A 327 LEU A 328 0 6.14 SITE 1 AC1 12 ILE A 25 VAL A 33 ALA A 46 VAL A 79 SITE 2 AC1 12 PHE A 103 ASP A 104 PHE A 105 CYS A 106 SITE 3 AC1 12 GLU A 107 ASP A 109 ASN A 154 LEU A 156 SITE 1 AC2 8 GLN B 46 GLN B 56 PHE B 176 THR B 179 SITE 2 AC2 8 ASN B 180 HIS B 183 ARG B 251 ARG B 254 SITE 1 AC3 4 PRO B 98 LYS B 99 LYS B 100 HIS B 103 CRYST1 171.760 171.760 97.790 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005822 0.003361 0.000000 0.00000 SCALE2 0.000000 0.006723 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010226 0.00000