HEADER VIRAL PROTEIN 25-MAY-20 6Z4U TITLE X-RAY CRYSTALLOGRAPHIC STRUCTURE OF ORF9B FROM SARS-COV-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN 9B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ACCESSORY PROTEIN 9B,ORF-9B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: T7 EXPRESS KEYWDS ORF9B, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.D.WEEKS,S.DE GRAEF,A.MUNAWAR REVDAT 2 24-JAN-24 6Z4U 1 REMARK REVDAT 1 17-JUN-20 6Z4U 0 JRNL AUTH S.D.WEEKS,S.DE GRAEF,A.MUNAWAR JRNL TITL X-RAY CRYSTALLOGRAPHIC STRUCTURE OF ORF9B FROM SARS-COV-2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 12363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 639 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 896 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.2720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1249 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : 2.13000 REMARK 3 B33 (A**2) : -2.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.017 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1282 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1744 ; 1.704 ; 1.656 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 162 ; 8.277 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 43 ;34.830 ;22.558 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 221 ;16.957 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;17.032 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 188 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 904 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2629 3.4733 -5.4267 REMARK 3 T TENSOR REMARK 3 T11: 0.0945 T22: 0.0685 REMARK 3 T33: 0.1238 T12: -0.0094 REMARK 3 T13: 0.0214 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.0672 L22: 1.5394 REMARK 3 L33: 0.8167 L12: -0.2815 REMARK 3 L13: -0.1446 L23: 0.7805 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: 0.0120 S13: 0.0468 REMARK 3 S21: -0.0825 S22: -0.0859 S23: -0.0564 REMARK 3 S31: 0.0567 S32: -0.0901 S33: 0.0526 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 97 REMARK 3 ORIGIN FOR THE GROUP (A): 9.7455 -5.5155 -2.9489 REMARK 3 T TENSOR REMARK 3 T11: 0.1894 T22: 0.0055 REMARK 3 T33: 0.0432 T12: -0.0127 REMARK 3 T13: 0.0261 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.5925 L22: 2.5652 REMARK 3 L33: 2.3811 L12: -1.2299 REMARK 3 L13: -0.4210 L23: 1.0157 REMARK 3 S TENSOR REMARK 3 S11: -0.0811 S12: -0.0178 S13: 0.0596 REMARK 3 S21: 0.1647 S22: 0.0259 S23: -0.1132 REMARK 3 S31: 0.4617 S32: -0.0461 S33: 0.0552 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6Z4U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108885. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979329 REMARK 200 MONOCHROMATOR : SI 111 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 2.2.4-G04DE204B4-RELEASE REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13064 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 36.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.78300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.7.02 REMARK 200 STARTING MODEL: 2CME REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 8.3 MG/ML IN 20 MM TRIS PH REMARK 280 7.0 150 MM NACL, 1MM DTT WAS MIXED IN A 3:2 RATIO WITH THE REMARK 280 MORPHEUS CRYSTALLIZATION SCREEN CONDITION E4 (TUBE 2-4; 0.12 M REMARK 280 ETHYLENE GLYCOLS 0.1 M BUFFER SYSTEM 1 PH 6.5 37.5 % V/V REMARK 280 PRECIPITANT MIX 4), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.01500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.76800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.28550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.76800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.01500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.28550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 26 REMARK 465 GLU A 27 REMARK 465 ASN A 28 REMARK 465 ALA A 29 REMARK 465 VAL A 30 REMARK 465 GLY A 31 REMARK 465 ARG A 32 REMARK 465 ASP A 33 REMARK 465 GLN A 34 REMARK 465 ASN A 35 REMARK 465 ASN A 36 REMARK 465 VAL A 37 REMARK 465 GLY A 38 REMARK 465 MET B 1 REMARK 465 ARG B 25 REMARK 465 MET B 26 REMARK 465 GLU B 27 REMARK 465 ASN B 28 REMARK 465 ALA B 29 REMARK 465 VAL B 30 REMARK 465 GLY B 31 REMARK 465 ARG B 32 REMARK 465 ASP B 33 REMARK 465 GLN B 34 REMARK 465 ASN B 35 REMARK 465 ASN B 36 REMARK 465 VAL B 37 REMARK 465 GLY B 38 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 62 CG OD1 ND2 REMARK 470 LEU A 64 CG CD1 CD2 REMARK 470 GLU A 65 CG CD OE1 OE2 REMARK 470 GLN A 77 CG CD OE1 NE2 REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 LYS B 40 CG CD CE NZ REMARK 470 LEU B 61 CG CD1 CD2 REMARK 470 GLU B 65 CG CD OE1 OE2 REMARK 470 ASP B 66 CG OD1 OD2 REMARK 470 GLU B 85 CG CD OE1 OE2 REMARK 470 LYS B 97 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 7 49.58 -140.99 REMARK 500 ASP A 16 122.09 -31.66 REMARK 500 SER A 63 117.34 -166.91 REMARK 500 GLU B 7 -16.97 174.28 REMARK 500 ASP B 16 114.61 -27.25 REMARK 500 PRO B 17 2.23 -66.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 15P B 100 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 15P B 100 DBREF 6Z4U A 1 97 UNP P0DTD2 ORF9B_SARS2 1 97 DBREF 6Z4U B 1 97 UNP P0DTD2 ORF9B_SARS2 1 97 SEQRES 1 A 97 MET ASP PRO LYS ILE SER GLU MET HIS PRO ALA LEU ARG SEQRES 2 A 97 LEU VAL ASP PRO GLN ILE GLN LEU ALA VAL THR ARG MET SEQRES 3 A 97 GLU ASN ALA VAL GLY ARG ASP GLN ASN ASN VAL GLY PRO SEQRES 4 A 97 LYS VAL TYR PRO ILE ILE LEU ARG LEU GLY SER PRO LEU SEQRES 5 A 97 SER LEU ASN MET ALA ARG LYS THR LEU ASN SER LEU GLU SEQRES 6 A 97 ASP LYS ALA PHE GLN LEU THR PRO ILE ALA VAL GLN MET SEQRES 7 A 97 THR LYS LEU ALA THR THR GLU GLU LEU PRO ASP GLU PHE SEQRES 8 A 97 VAL VAL VAL THR VAL LYS SEQRES 1 B 97 MET ASP PRO LYS ILE SER GLU MET HIS PRO ALA LEU ARG SEQRES 2 B 97 LEU VAL ASP PRO GLN ILE GLN LEU ALA VAL THR ARG MET SEQRES 3 B 97 GLU ASN ALA VAL GLY ARG ASP GLN ASN ASN VAL GLY PRO SEQRES 4 B 97 LYS VAL TYR PRO ILE ILE LEU ARG LEU GLY SER PRO LEU SEQRES 5 B 97 SER LEU ASN MET ALA ARG LYS THR LEU ASN SER LEU GLU SEQRES 6 B 97 ASP LYS ALA PHE GLN LEU THR PRO ILE ALA VAL GLN MET SEQRES 7 B 97 THR LYS LEU ALA THR THR GLU GLU LEU PRO ASP GLU PHE SEQRES 8 B 97 VAL VAL VAL THR VAL LYS HET 15P B 100 14 HETNAM 15P POLYETHYLENE GLYCOL (N=34) HETSYN 15P PEG 1500 FORMUL 3 15P C69 H140 O35 FORMUL 4 HOH *49(H2 O) HELIX 1 AA1 LYS A 4 MET A 8 5 5 HELIX 2 AA2 THR A 83 LEU A 87 5 5 HELIX 3 AA3 THR B 83 LEU B 87 5 5 SHEET 1 AA1 6 MET A 78 THR A 79 0 SHEET 2 AA1 6 LEU A 12 VAL A 15 -1 N LEU A 14 O THR A 79 SHEET 3 AA1 6 ILE A 44 LEU A 48 -1 O LEU A 46 N ARG A 13 SHEET 4 AA1 6 GLU A 90 VAL A 96 1 O VAL A 94 N ILE A 45 SHEET 5 AA1 6 LEU B 52 ASN B 62 -1 O ALA B 57 N PHE A 91 SHEET 6 AA1 6 LYS B 67 ILE B 74 -1 O GLN B 70 N ARG B 58 SHEET 1 AA2 7 LYS A 40 TYR A 42 0 SHEET 2 AA2 7 ILE A 19 VAL A 23 -1 N VAL A 23 O LYS A 40 SHEET 3 AA2 7 ILE B 19 VAL B 23 -1 O GLN B 20 N ALA A 22 SHEET 4 AA2 7 LYS B 40 LEU B 48 -1 O LYS B 40 N VAL B 23 SHEET 5 AA2 7 GLU B 90 VAL B 96 1 O VAL B 94 N ILE B 45 SHEET 6 AA2 7 LEU A 52 LEU A 61 -1 N ALA A 57 O PHE B 91 SHEET 7 AA2 7 ALA A 68 ILE A 74 -1 O THR A 72 N MET A 56 SHEET 1 AA3 6 LYS A 40 TYR A 42 0 SHEET 2 AA3 6 ILE A 19 VAL A 23 -1 N VAL A 23 O LYS A 40 SHEET 3 AA3 6 ILE B 19 VAL B 23 -1 O GLN B 20 N ALA A 22 SHEET 4 AA3 6 LYS B 40 LEU B 48 -1 O LYS B 40 N VAL B 23 SHEET 5 AA3 6 ARG B 13 VAL B 15 -1 N ARG B 13 O LEU B 46 SHEET 6 AA3 6 MET B 78 LYS B 80 -1 O THR B 79 N LEU B 14 CISPEP 1 HIS A 9 PRO A 10 0 2.07 CISPEP 2 HIS B 9 PRO B 10 0 -16.93 SITE 1 AC1 3 LEU B 52 MET B 78 HOH B 201 CRYST1 36.030 64.571 73.536 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027755 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015487 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013599 0.00000