HEADER METAL BINDING PROTEIN 27-MAY-20 6Z5Y TITLE STRUCTURE OF A NOVEL LPMO FROM PHYTOPHTHORA INFESTANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYTIC POLYSACCHARIDE MONOOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: C-TERMINUS STREP TAG SEQUENCE: WSHPQFEK SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHYTOPHTHORA INFESTANS (STRAIN T30-4); SOURCE 3 ORGANISM_COMMON: POTATO LATE BLIGHT FUNGUS; SOURCE 4 ORGANISM_TAXID: 403677; SOURCE 5 GENE: PITG_04949; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LYTIC POLYSACCHARIDE MONOOXYGENASE, COPPER, LPMO, METAL BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.URRESTI,G.J.DAVIES REVDAT 2 29-SEP-21 6Z5Y 1 JRNL REMARK REVDAT 1 11-AUG-21 6Z5Y 0 JRNL AUTH F.SABBADIN,S.URRESTI,B.HENRISSAT,A.O.AVROVA,L.R.J.WELSH, JRNL AUTH 2 P.J.LINDLEY,M.CSUKAI,J.N.SQUIRES,P.H.WALTON,G.J.DAVIES, JRNL AUTH 3 N.C.BRUCE,S.C.WHISSON,S.J.MCQUEEN-MASON JRNL TITL SECRETED PECTIN MONOOXYGENASES DRIVE PLANT INFECTION BY JRNL TITL 2 PATHOGENIC OOMYCETES. JRNL REF SCIENCE V. 373 774 2021 JRNL REFN ESSN 1095-9203 JRNL PMID 34385392 JRNL DOI 10.1126/SCIENCE.ABJ1342 REMARK 2 REMARK 2 RESOLUTION. 1.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 148984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 7636 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9929 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 556 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2683 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 351 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : -0.07000 REMARK 3 B13 (A**2) : 0.29000 REMARK 3 B23 (A**2) : -0.15000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.025 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.025 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.018 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.791 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2980 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2594 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4104 ; 1.957 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6097 ; 1.602 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 410 ; 7.409 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;35.508 ;24.478 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 454 ;11.436 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;15.647 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 381 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3453 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 603 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5574 ; 2.716 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REMARK 3 REFINED INDIVIDUALLY REMARK 3 RESIDUES 139-142 AND 172-177 (CHAINS A AND B) SHOW POOR DENSITY REMARK 3 AND THEREFORE LOW OCCUPANCY. C-TERMINAL RESIDUES (172-177) REMARK 3 CORRESPOND TO A NON CLEAVED STREP TAG, AND SOME HAVE BEEN BUILT REMARK 3 WITH NO SIDE CHAINS. REMARK 4 REMARK 4 6Z5Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108530. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.916 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 156702 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.010 REMARK 200 RESOLUTION RANGE LOW (A) : 28.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: FRAGON REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: HOLLOW RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM TRIS PH 7.0, 22% POLYETHYLENE REMARK 280 GLYCOL (PEG) 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 178 REMARK 465 GLU A 179 REMARK 465 LYS A 180 REMARK 465 PHE B 178 REMARK 465 GLU B 179 REMARK 465 LYS B 180 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 LYS A 35 CD CE NZ REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 LYS A 54 CE NZ REMARK 470 LYS A 158 CD CE NZ REMARK 470 TRP A 173 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 173 CZ3 CH2 REMARK 470 HIS A 175 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 177 CG CD OE1 NE2 REMARK 470 LYS B 28 CG CD CE NZ REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 LYS B 50 CD CE NZ REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 LYS B 107 CE NZ REMARK 470 LYS B 131 CE NZ REMARK 470 LYS B 156 CB CG CD CE NZ REMARK 470 LYS B 158 CD CE NZ REMARK 470 TRP B 173 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 173 CZ3 CH2 REMARK 470 HIS B 175 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 6 O HOH B 301 1.73 REMARK 500 O LEU B 47 ND2 ASN B 51 1.97 REMARK 500 OE2 GLU A 24 O HOH A 303 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 24 CD GLU A 24 OE2 -0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 13 -90.81 -140.23 REMARK 500 CYS A 70 -0.03 71.57 REMARK 500 ASP A 105 -128.82 47.64 REMARK 500 ASP A 114 87.89 -150.35 REMARK 500 ALA B 13 -104.12 -131.34 REMARK 500 ASP B 105 -128.28 45.48 REMARK 500 ASP B 114 89.72 -151.15 REMARK 500 LYS B 156 53.89 37.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU B 41 11.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 481 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 482 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH A 483 DISTANCE = 7.68 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PGE A 202 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 1 N REMARK 620 2 HIS A 1 ND1 92.9 REMARK 620 3 HIS A 96 NE2 99.3 167.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 177 O REMARK 620 2 HIS B 1 N 148.0 REMARK 620 3 HIS B 1 ND1 89.0 91.4 REMARK 620 4 HIS B 96 NE2 87.0 97.9 168.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU B 201 DBREF 6Z5Y A 1 172 UNP D0N2F7 D0N2F7_PHYIT 24 195 DBREF 6Z5Y B 1 172 UNP D0N2F7 D0N2F7_PHYIT 24 195 SEQADV 6Z5Y TRP A 173 UNP D0N2F7 EXPRESSION TAG SEQADV 6Z5Y SER A 174 UNP D0N2F7 EXPRESSION TAG SEQADV 6Z5Y HIS A 175 UNP D0N2F7 EXPRESSION TAG SEQADV 6Z5Y PRO A 176 UNP D0N2F7 EXPRESSION TAG SEQADV 6Z5Y GLN A 177 UNP D0N2F7 EXPRESSION TAG SEQADV 6Z5Y PHE A 178 UNP D0N2F7 EXPRESSION TAG SEQADV 6Z5Y GLU A 179 UNP D0N2F7 EXPRESSION TAG SEQADV 6Z5Y LYS A 180 UNP D0N2F7 EXPRESSION TAG SEQADV 6Z5Y TRP B 173 UNP D0N2F7 EXPRESSION TAG SEQADV 6Z5Y SER B 174 UNP D0N2F7 EXPRESSION TAG SEQADV 6Z5Y HIS B 175 UNP D0N2F7 EXPRESSION TAG SEQADV 6Z5Y PRO B 176 UNP D0N2F7 EXPRESSION TAG SEQADV 6Z5Y GLN B 177 UNP D0N2F7 EXPRESSION TAG SEQADV 6Z5Y PHE B 178 UNP D0N2F7 EXPRESSION TAG SEQADV 6Z5Y GLU B 179 UNP D0N2F7 EXPRESSION TAG SEQADV 6Z5Y LYS B 180 UNP D0N2F7 EXPRESSION TAG SEQRES 1 A 180 HIS GLY TYR ILE ALA LYS PRO ALA PRO SER TRP LYS ALA SEQRES 2 A 180 SER LYS THR ASN ASN TRP VAL VAL GLU ILE GLU PRO GLN SEQRES 3 A 180 TRP LYS GLY GLY TRP ASP GLU SER LYS GLY ASP GLU GLY SEQRES 4 A 180 LEU LEU ALA THR PHE LYS GLU LEU ALA PRO LYS ASN ASN SEQRES 5 A 180 PHE LYS ASP VAL ARG SER LEU MET ASP GLY ASN PRO VAL SEQRES 6 A 180 PHE GLY GLU GLU CYS GLY PHE THR ASP PRO LYS GLY LYS SEQRES 7 A 180 PRO SER GLU PRO PRO SER ASP GLY THR ALA THR PHE SER SEQRES 8 A 180 ARG GLY ILE VAL HIS ALA GLY PRO CYS GLU ILE TRP LEU SEQRES 9 A 180 ASP ASP LYS MET VAL LEU GLN ASN ASP ASP CYS GLN SER SEQRES 10 A 180 ALA TYR GLY ASP GLY THR GLN GLN THR ILE ALA VAL PHE SEQRES 11 A 180 LYS PRO VAL ASP TYR SER SER CYS ALA ALA GLY GLY CYS SEQRES 12 A 180 MET LEU ARG PHE TYR TRP LEU ALA LEU GLN ARG LEU LYS SEQRES 13 A 180 GLY LYS THR VAL TRP GLN ALA TYR LYS ASN CYS ILE PRO SEQRES 14 A 180 LEU THR GLY TRP SER HIS PRO GLN PHE GLU LYS SEQRES 1 B 180 HIS GLY TYR ILE ALA LYS PRO ALA PRO SER TRP LYS ALA SEQRES 2 B 180 SER LYS THR ASN ASN TRP VAL VAL GLU ILE GLU PRO GLN SEQRES 3 B 180 TRP LYS GLY GLY TRP ASP GLU SER LYS GLY ASP GLU GLY SEQRES 4 B 180 LEU LEU ALA THR PHE LYS GLU LEU ALA PRO LYS ASN ASN SEQRES 5 B 180 PHE LYS ASP VAL ARG SER LEU MET ASP GLY ASN PRO VAL SEQRES 6 B 180 PHE GLY GLU GLU CYS GLY PHE THR ASP PRO LYS GLY LYS SEQRES 7 B 180 PRO SER GLU PRO PRO SER ASP GLY THR ALA THR PHE SER SEQRES 8 B 180 ARG GLY ILE VAL HIS ALA GLY PRO CYS GLU ILE TRP LEU SEQRES 9 B 180 ASP ASP LYS MET VAL LEU GLN ASN ASP ASP CYS GLN SER SEQRES 10 B 180 ALA TYR GLY ASP GLY THR GLN GLN THR ILE ALA VAL PHE SEQRES 11 B 180 LYS PRO VAL ASP TYR SER SER CYS ALA ALA GLY GLY CYS SEQRES 12 B 180 MET LEU ARG PHE TYR TRP LEU ALA LEU GLN ARG LEU LYS SEQRES 13 B 180 GLY LYS THR VAL TRP GLN ALA TYR LYS ASN CYS ILE PRO SEQRES 14 B 180 LEU THR GLY TRP SER HIS PRO GLN PHE GLU LYS HET CU A 201 1 HET PGE A 202 7 HET CU B 201 1 HETNAM CU COPPER (II) ION HETNAM PGE TRIETHYLENE GLYCOL FORMUL 3 CU 2(CU 2+) FORMUL 4 PGE C6 H14 O4 FORMUL 6 HOH *351(H2 O) HELIX 1 AA1 GLY A 30 SER A 34 5 5 HELIX 2 AA2 LYS A 35 ALA A 48 1 14 HELIX 3 AA3 PRO A 49 ASN A 52 5 4 HELIX 4 AA4 ASP A 55 ASP A 61 1 7 HELIX 5 AA5 ASN A 63 GLY A 67 5 5 HELIX 6 AA6 ASP A 114 GLY A 120 1 7 HELIX 7 AA7 TYR A 135 ALA A 140 5 6 HELIX 8 AA8 LYS B 35 ASN B 51 1 17 HELIX 9 AA9 ASP B 55 ASP B 61 1 7 HELIX 10 AB1 ASN B 63 GLY B 67 5 5 HELIX 11 AB2 ASP B 114 GLY B 120 1 7 HELIX 12 AB3 TYR B 135 ALA B 139 5 5 SHEET 1 AA1 3 ILE A 4 LYS A 6 0 SHEET 2 AA1 3 ALA A 88 PHE A 90 -1 O THR A 89 N LYS A 6 SHEET 3 AA1 3 VAL A 129 PHE A 130 -1 O PHE A 130 N ALA A 88 SHEET 1 AA2 5 VAL A 21 ILE A 23 0 SHEET 2 AA2 5 LYS A 158 LEU A 170 -1 O TRP A 161 N ILE A 23 SHEET 3 AA2 5 CYS A 143 LEU A 155 -1 N GLN A 153 O VAL A 160 SHEET 4 AA2 5 CYS A 100 LEU A 104 -1 N TRP A 103 O ARG A 146 SHEET 5 AA2 5 LYS A 107 ASN A 112 -1 O LYS A 107 N LEU A 104 SHEET 1 AA3 3 ILE B 4 LYS B 6 0 SHEET 2 AA3 3 ALA B 88 PHE B 90 -1 O THR B 89 N ALA B 5 SHEET 3 AA3 3 VAL B 129 PHE B 130 -1 O PHE B 130 N ALA B 88 SHEET 1 AA4 5 VAL B 21 ILE B 23 0 SHEET 2 AA4 5 LYS B 158 LEU B 170 -1 O TRP B 161 N ILE B 23 SHEET 3 AA4 5 CYS B 143 LEU B 155 -1 N CYS B 143 O LEU B 170 SHEET 4 AA4 5 CYS B 100 LEU B 104 -1 N TRP B 103 O ARG B 146 SHEET 5 AA4 5 LYS B 107 ASN B 112 -1 O LYS B 107 N LEU B 104 SSBOND 1 CYS A 70 CYS A 167 1555 1555 2.04 SSBOND 2 CYS A 100 CYS A 115 1555 1555 2.07 SSBOND 3 CYS A 138 CYS A 143 1555 1555 2.07 SSBOND 4 CYS B 70 CYS B 167 1555 1555 2.09 SSBOND 5 CYS B 100 CYS B 115 1555 1555 2.03 SSBOND 6 CYS B 138 CYS B 143 1555 1555 2.17 LINK N HIS A 1 CU CU A 201 1555 1555 2.20 LINK ND1 HIS A 1 CU CU A 201 1555 1555 1.91 LINK NE2 HIS A 96 CU CU A 201 1555 1555 1.92 LINK O GLN A 177 CU CU B 201 1555 1555 2.43 LINK N HIS B 1 CU CU B 201 1555 1555 2.20 LINK ND1 HIS B 1 CU CU B 201 1555 1555 1.89 LINK NE2 HIS B 96 CU CU B 201 1555 1555 1.93 CISPEP 1 LYS A 6 PRO A 7 0 -0.97 CISPEP 2 LYS A 6 PRO A 7 0 -0.43 CISPEP 3 LYS A 131 PRO A 132 0 -7.14 CISPEP 4 LYS B 6 PRO B 7 0 0.52 CISPEP 5 LYS B 6 PRO B 7 0 4.55 CISPEP 6 LYS B 131 PRO B 132 0 -7.68 SITE 1 AC1 4 HIS A 1 HIS A 96 TYR A 164 GLN B 177 SITE 1 AC2 8 GLN A 26 TRP A 27 ASN A 51 LEU A 59 SITE 2 AC2 8 ASN A 63 HOH A 304 HOH A 307 HOH A 346 SITE 1 AC3 4 GLN A 177 HIS B 1 HIS B 96 TYR B 164 CRYST1 36.293 45.458 53.687 83.91 71.85 83.78 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027554 -0.003005 -0.008831 0.00000 SCALE2 0.000000 0.022129 -0.001699 0.00000 SCALE3 0.000000 0.000000 0.019660 0.00000