HEADER HYDROLASE 28-MAY-20 6Z68 TITLE A NOVEL METAGENOMIC ALPHA/BETA-FOLD ESTERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYL ESTERASE/LIPASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDONOCARDIA THERMOPHILA; SOURCE 3 ORGANISM_TAXID: 1848; SOURCE 4 GENE: SAMN05443637_118146; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/BETA-FOLD HYDROLASE; ESTERASE; METAGENOME; INHIBITOR-BOUND; KEYWDS 2 SUBSTRATE PROMISCUITY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BOLLINGER,S.THIES,A.HOEPPNER,S.KOBUS,K.-E.JAEGER,S.H.J.SMITS REVDAT 3 15-MAY-24 6Z68 1 REMARK REVDAT 2 16-JUN-21 6Z68 1 JRNL REVDAT 1 30-DEC-20 6Z68 0 JRNL AUTH A.HOPPNER,A.BOLLINGER,S.KOBUS,S.THIES,C.COSCOLIN,M.FERRER, JRNL AUTH 2 K.E.JAEGER,S.H.J.SMITS JRNL TITL CRYSTAL STRUCTURES OF A NOVEL FAMILY IV ESTERASE IN FREE AND JRNL TITL 2 SUBSTRATE-BOUND FORM. JRNL REF FEBS J. V. 288 3570 2021 JRNL REFN ISSN 1742-464X JRNL PMID 33342083 JRNL DOI 10.1111/FEBS.15680 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 153608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6671 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 57.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5429 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 936 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.99000 REMARK 3 B22 (A**2) : 1.85000 REMARK 3 B33 (A**2) : 1.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.052 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.086 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5702 ; 0.017 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5307 ; 0.005 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7776 ; 2.006 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12254 ; 1.617 ; 1.571 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 746 ; 6.234 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 316 ;27.600 ;20.095 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 837 ;12.673 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 59 ;17.858 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 717 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6577 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1252 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 11009 ; 7.916 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6Z68 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108901. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976246 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 155980 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 55.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: XXXX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25 M MAGNESIUM CHLORIDE, 0.1 M TRIS REMARK 280 PH 8.5 AND 35 % (W/V) PEG 4000 WITH 0.01 M TCEP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 29.35500 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.25500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 29.35500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.25500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 SER A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 THR A 8 REMARK 465 GLU A 9 REMARK 465 THR A 10 REMARK 465 GLY A 11 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 THR B 4 REMARK 465 SER B 5 REMARK 465 ASN B 6 REMARK 465 SER B 7 REMARK 465 THR B 8 REMARK 465 GLU B 9 REMARK 465 THR B 10 REMARK 465 GLY B 11 REMARK 465 LEU B 369 REMARK 465 GLU B 370 REMARK 465 HIS B 371 REMARK 465 HIS B 372 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 465 HIS B 375 REMARK 465 HIS B 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 12 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 310 CD2 REMARK 470 HIS A 374 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 12 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 528 O HOH B 890 1.79 REMARK 500 O HOH A 929 O HOH B 890 1.82 REMARK 500 O HOH A 893 O HOH B 573 1.83 REMARK 500 O HOH A 893 O HOH B 945 1.92 REMARK 500 O HOH B 872 O HOH B 954 1.97 REMARK 500 O HOH A 538 O HOH A 893 1.99 REMARK 500 O HOH B 513 O HOH B 558 2.04 REMARK 500 O HOH A 559 O HOH A 694 2.05 REMARK 500 OD1 ASP B 312 O HOH B 501 2.06 REMARK 500 O HOH B 872 O HOH B 922 2.07 REMARK 500 O HOH A 884 O HOH A 918 2.08 REMARK 500 O HOH B 587 O HOH B 872 2.08 REMARK 500 O HOH B 558 O HOH B 890 2.09 REMARK 500 O HOH A 765 O HOH A 918 2.09 REMARK 500 OE1 GLU A 94 O HOH A 501 2.10 REMARK 500 O HOH B 752 O HOH B 755 2.11 REMARK 500 O HOH A 795 O HOH A 918 2.12 REMARK 500 O HOH A 918 O HOH B 925 2.14 REMARK 500 O HOH B 872 O HOH B 898 2.14 REMARK 500 O HOH A 776 O HOH A 918 2.15 REMARK 500 O HOH A 743 O HOH A 893 2.16 REMARK 500 O HOH A 513 O HOH A 646 2.17 REMARK 500 O HOH B 766 O HOH B 832 2.18 REMARK 500 O HOH A 745 O HOH A 844 2.18 REMARK 500 O HOH B 890 O HOH B 915 2.19 REMARK 500 NH2 ARG B 319 O HOH B 502 2.19 REMARK 500 O HOH B 836 O HOH B 872 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 13 C PRO A 14 N 0.125 REMARK 500 GLU A 243 CD GLU A 243 OE1 0.115 REMARK 500 GLU A 243 CD GLU A 243 OE2 0.206 REMARK 500 GLU A 270 CD GLU A 270 OE1 0.122 REMARK 500 PRO A 274 N PRO A 274 CA 0.192 REMARK 500 ARG A 329 CZ ARG A 329 NH2 0.089 REMARK 500 GLU B 63 CD GLU B 63 OE1 0.072 REMARK 500 GLU B 63 CD GLU B 63 OE2 0.104 REMARK 500 GLU B 73 CD GLU B 73 OE2 0.082 REMARK 500 GLU B 243 CD GLU B 243 OE1 0.083 REMARK 500 GLU B 243 CD GLU B 243 OE2 0.139 REMARK 500 PRO B 274 C GLY B 275 N 0.150 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 13 CG - CD - NE ANGL. DEV. = -17.8 DEGREES REMARK 500 ARG A 13 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 92 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 TYR A 258 CB - CG - CD1 ANGL. DEV. = 4.0 DEGREES REMARK 500 PRO A 274 C - N - CA ANGL. DEV. = 11.4 DEGREES REMARK 500 ASP A 312 CB - CG - OD2 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG B 29 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 GLU B 73 CG - CD - OE1 ANGL. DEV. = 12.8 DEGREES REMARK 500 ARG B 92 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP B 144 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 TYR B 258 CB - CG - CD1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B 311 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 329 CG - CD - NE ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG B 329 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 329 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 329 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 132 152.40 81.08 REMARK 500 SER A 194 -93.62 -92.36 REMARK 500 SER A 202 -119.58 62.48 REMARK 500 VAL A 231 53.93 34.31 REMARK 500 PHE A 259 -52.90 76.29 REMARK 500 PHE A 344 52.68 -100.40 REMARK 500 HIS A 373 131.71 -38.98 REMARK 500 LEU B 132 152.94 84.23 REMARK 500 SER B 194 -87.04 -92.39 REMARK 500 SER B 202 -118.92 67.11 REMARK 500 VAL B 231 53.10 33.11 REMARK 500 PHE B 259 -55.40 76.99 REMARK 500 VAL B 307 41.00 -109.91 REMARK 500 PHE B 344 50.38 -97.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 971 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 972 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 973 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A 974 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 975 DISTANCE = 6.75 ANGSTROMS REMARK 525 HOH A 976 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH A 977 DISTANCE = 8.19 ANGSTROMS REMARK 525 HOH B 957 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH B 958 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH B 959 DISTANCE = 6.70 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 403 DBREF1 6Z68 A 1 368 UNP A0A1M6Y2K1_PSETH DBREF2 6Z68 A A0A1M6Y2K1 1 368 DBREF1 6Z68 B 1 368 UNP A0A1M6Y2K1_PSETH DBREF2 6Z68 B A0A1M6Y2K1 1 368 SEQADV 6Z68 VAL A 271 UNP A0A1M6Y2K LEU 271 CONFLICT SEQADV 6Z68 LEU A 369 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z68 GLU A 370 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z68 HIS A 371 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z68 HIS A 372 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z68 HIS A 373 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z68 HIS A 374 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z68 HIS A 375 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z68 HIS A 376 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z68 VAL B 271 UNP A0A1M6Y2K LEU 271 CONFLICT SEQADV 6Z68 LEU B 369 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z68 GLU B 370 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z68 HIS B 371 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z68 HIS B 372 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z68 HIS B 373 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z68 HIS B 374 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z68 HIS B 375 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z68 HIS B 376 UNP A0A1M6Y2K EXPRESSION TAG SEQRES 1 A 376 MET THR THR THR SER ASN SER THR GLU THR GLY ARG ARG SEQRES 2 A 376 PRO GLY ARG LEU GLY ASP PRO ASP ARG CYS LEU ARG THR SEQRES 3 A 376 ASP PRO ARG THR ASP PRO ARG THR VAL GLU ALA LEU ALA SEQRES 4 A 376 PRO PHE GLY LEU ASP VAL ASN ALA ALA PRO ALA PRO ILE SEQRES 5 A 376 GLY PRO ASP ALA PRO ARG GLU GLN GLN LEU GLU TYR ALA SEQRES 6 A 376 MET GLY ALA GLU ALA ALA PHE GLU GLY VAL PHE ALA ALA SEQRES 7 A 376 LEU MET ASP GLY LEU ASP PRO VAL PRO GLY ILE GLU ARG SEQRES 8 A 376 ARG THR GLU THR ILE SER GLY PRO ALA GLY ASN GLU ILE SEQRES 9 A 376 LYS LEU TYR VAL HIS ARG PRO ALA GLY ALA VAL GLY PRO SEQRES 10 A 376 LEU PRO GLY ILE PHE HIS ILE HIS GLY GLY GLY MET VAL SEQRES 11 A 376 ILE LEU GLN ALA ALA GLY PRO VAL TYR VAL ARG PHE ARG SEQRES 12 A 376 ASP GLU LEU ALA ALA THR GLY THR VAL VAL VAL GLY VAL SEQRES 13 A 376 GLU TYR ARG ASN GLY ALA GLY VAL LEU GLY PRO HIS PRO SEQRES 14 A 376 PHE PRO ALA GLY LEU HIS ASP CYS ALA VAL ALA LEU ASP SEQRES 15 A 376 TRP VAL HIS ALA ARG ARG ALA GLU LEU GLY ILE SER THR SEQRES 16 A 376 LEU THR VAL ALA GLY GLU SER GLY GLY GLY ASN LEU THR SEQRES 17 A 376 LEU ALA THR ALA ILE ARG ALA LYS ARG GLU GLY ARG LEU SEQRES 18 A 376 ASP ALA ILE ASP GLY VAL TYR ALA LEU VAL PRO TYR ILE SEQRES 19 A 376 SER GLY MET TYR GLY ARG SER ARG GLU GLU ARG GLU ALA SEQRES 20 A 376 GLU LEU PRO SER LEU VAL GLU CYS ASP GLY TYR PHE ILE SEQRES 21 A 376 SER CYS ASP LEU CYS ALA VAL PHE VAL GLU VAL TYR ASP SEQRES 22 A 376 PRO GLY THR ALA HIS LEU THR ASP PRO LEU ALA TRP PRO SEQRES 23 A 376 TYR HIS ALA ALA ARG GLU ASP LEU VAL GLY LEU PRO PRO SEQRES 24 A 376 HIS VAL ILE SER VAL ASN GLU VAL ASP PRO LEU ARG ASP SEQRES 25 A 376 GLU GLY LEU ALA TYR TYR ARG LYS LEU VAL GLU ALA GLY SEQRES 26 A 376 VAL GLU ALA ARG SER ARG VAL VAL PRO GLY ALA CYS HIS SEQRES 27 A 376 ALA ALA ASP MET MET PHE ARG LYS ALA ALA PRO ASP MET SEQRES 28 A 376 TYR GLU ALA THR VAL GLN ASP ILE HIS ASP PHE VAL THR SEQRES 29 A 376 SER LEU HIS ARG LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 376 MET THR THR THR SER ASN SER THR GLU THR GLY ARG ARG SEQRES 2 B 376 PRO GLY ARG LEU GLY ASP PRO ASP ARG CYS LEU ARG THR SEQRES 3 B 376 ASP PRO ARG THR ASP PRO ARG THR VAL GLU ALA LEU ALA SEQRES 4 B 376 PRO PHE GLY LEU ASP VAL ASN ALA ALA PRO ALA PRO ILE SEQRES 5 B 376 GLY PRO ASP ALA PRO ARG GLU GLN GLN LEU GLU TYR ALA SEQRES 6 B 376 MET GLY ALA GLU ALA ALA PHE GLU GLY VAL PHE ALA ALA SEQRES 7 B 376 LEU MET ASP GLY LEU ASP PRO VAL PRO GLY ILE GLU ARG SEQRES 8 B 376 ARG THR GLU THR ILE SER GLY PRO ALA GLY ASN GLU ILE SEQRES 9 B 376 LYS LEU TYR VAL HIS ARG PRO ALA GLY ALA VAL GLY PRO SEQRES 10 B 376 LEU PRO GLY ILE PHE HIS ILE HIS GLY GLY GLY MET VAL SEQRES 11 B 376 ILE LEU GLN ALA ALA GLY PRO VAL TYR VAL ARG PHE ARG SEQRES 12 B 376 ASP GLU LEU ALA ALA THR GLY THR VAL VAL VAL GLY VAL SEQRES 13 B 376 GLU TYR ARG ASN GLY ALA GLY VAL LEU GLY PRO HIS PRO SEQRES 14 B 376 PHE PRO ALA GLY LEU HIS ASP CYS ALA VAL ALA LEU ASP SEQRES 15 B 376 TRP VAL HIS ALA ARG ARG ALA GLU LEU GLY ILE SER THR SEQRES 16 B 376 LEU THR VAL ALA GLY GLU SER GLY GLY GLY ASN LEU THR SEQRES 17 B 376 LEU ALA THR ALA ILE ARG ALA LYS ARG GLU GLY ARG LEU SEQRES 18 B 376 ASP ALA ILE ASP GLY VAL TYR ALA LEU VAL PRO TYR ILE SEQRES 19 B 376 SER GLY MET TYR GLY ARG SER ARG GLU GLU ARG GLU ALA SEQRES 20 B 376 GLU LEU PRO SER LEU VAL GLU CYS ASP GLY TYR PHE ILE SEQRES 21 B 376 SER CYS ASP LEU CYS ALA VAL PHE VAL GLU VAL TYR ASP SEQRES 22 B 376 PRO GLY THR ALA HIS LEU THR ASP PRO LEU ALA TRP PRO SEQRES 23 B 376 TYR HIS ALA ALA ARG GLU ASP LEU VAL GLY LEU PRO PRO SEQRES 24 B 376 HIS VAL ILE SER VAL ASN GLU VAL ASP PRO LEU ARG ASP SEQRES 25 B 376 GLU GLY LEU ALA TYR TYR ARG LYS LEU VAL GLU ALA GLY SEQRES 26 B 376 VAL GLU ALA ARG SER ARG VAL VAL PRO GLY ALA CYS HIS SEQRES 27 B 376 ALA ALA ASP MET MET PHE ARG LYS ALA ALA PRO ASP MET SEQRES 28 B 376 TYR GLU ALA THR VAL GLN ASP ILE HIS ASP PHE VAL THR SEQRES 29 B 376 SER LEU HIS ARG LEU GLU HIS HIS HIS HIS HIS HIS HET PEG A 401 7 HET PG4 A 402 13 HET PEG B 401 7 HET PG4 B 402 13 HET MG B 403 1 HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM MG MAGNESIUM ION FORMUL 3 PEG 2(C4 H10 O3) FORMUL 4 PG4 2(C8 H18 O5) FORMUL 7 MG MG 2+ FORMUL 8 HOH *936(H2 O) HELIX 1 AA1 PRO A 14 ASP A 19 1 6 HELIX 2 AA2 CYS A 23 ASP A 27 5 5 HELIX 3 AA3 ASP A 31 ALA A 39 1 9 HELIX 4 AA4 PRO A 40 GLY A 42 5 3 HELIX 5 AA5 PRO A 57 ASP A 81 1 25 HELIX 6 AA6 GLY A 136 THR A 149 1 14 HELIX 7 AA7 PRO A 171 ARG A 187 1 17 HELIX 8 AA8 ARG A 187 GLY A 192 1 6 HELIX 9 AA9 SER A 202 GLY A 219 1 18 HELIX 10 AB1 ARG A 220 ILE A 224 5 5 HELIX 11 AB2 SER A 241 LEU A 249 1 9 HELIX 12 AB3 PRO A 250 CYS A 255 1 6 HELIX 13 AB4 SER A 261 ASP A 273 1 13 HELIX 14 AB5 TRP A 285 ALA A 289 5 5 HELIX 15 AB6 ALA A 290 VAL A 295 1 6 HELIX 16 AB7 LEU A 310 ALA A 324 1 15 HELIX 17 AB8 ALA A 339 PHE A 344 1 6 HELIX 18 AB9 ALA A 348 LEU A 366 1 19 HELIX 19 AC1 ARG A 368 HIS A 372 5 5 HELIX 20 AC2 PRO B 14 ASP B 19 1 6 HELIX 21 AC3 ASP B 31 ALA B 39 1 9 HELIX 22 AC4 PRO B 40 GLY B 42 5 3 HELIX 23 AC5 PRO B 57 ASP B 81 1 25 HELIX 24 AC6 GLY B 136 THR B 149 1 14 HELIX 25 AC7 PRO B 171 ARG B 187 1 17 HELIX 26 AC8 ARG B 187 GLY B 192 1 6 HELIX 27 AC9 SER B 202 GLY B 219 1 18 HELIX 28 AD1 ARG B 220 ILE B 224 5 5 HELIX 29 AD2 SER B 241 LEU B 249 1 9 HELIX 30 AD3 PRO B 250 CYS B 255 1 6 HELIX 31 AD4 SER B 261 ASP B 273 1 13 HELIX 32 AD5 TRP B 285 ALA B 289 5 5 HELIX 33 AD6 ALA B 290 VAL B 295 1 6 HELIX 34 AD7 LEU B 310 ALA B 324 1 15 HELIX 35 AD8 ALA B 339 PHE B 344 1 6 HELIX 36 AD9 ALA B 348 LEU B 366 1 19 SHEET 1 AA116 ILE A 89 SER A 97 0 SHEET 2 AA116 GLU A 103 PRO A 111 -1 O VAL A 108 N ARG A 92 SHEET 3 AA116 VAL A 152 GLU A 157 -1 O GLY A 155 N TYR A 107 SHEET 4 AA116 LEU A 118 ILE A 124 1 N ILE A 121 O VAL A 154 SHEET 5 AA116 ILE A 193 GLU A 201 1 O THR A 195 N GLY A 120 SHEET 6 AA116 GLY A 226 LEU A 230 1 O TYR A 228 N VAL A 198 SHEET 7 AA116 HIS A 300 ASN A 305 1 O VAL A 301 N ALA A 229 SHEET 8 AA116 ALA A 328 VAL A 333 1 O ARG A 331 N VAL A 304 SHEET 9 AA116 ALA B 328 VAL B 333 -1 O SER B 330 N SER A 330 SHEET 10 AA116 HIS B 300 ASN B 305 1 N VAL B 304 O ARG B 331 SHEET 11 AA116 GLY B 226 LEU B 230 1 N ALA B 229 O VAL B 301 SHEET 12 AA116 ILE B 193 GLU B 201 1 N VAL B 198 O TYR B 228 SHEET 13 AA116 LEU B 118 ILE B 124 1 N PHE B 122 O THR B 197 SHEET 14 AA116 VAL B 152 GLU B 157 1 O VAL B 154 N ILE B 121 SHEET 15 AA116 GLU B 103 PRO B 111 -1 N TYR B 107 O GLY B 155 SHEET 16 AA116 ILE B 89 SER B 97 -1 N ARG B 92 O VAL B 108 CISPEP 1 GLY A 166 PRO A 167 0 1.57 CISPEP 2 PHE A 170 PRO A 171 0 5.08 CISPEP 3 GLY B 166 PRO B 167 0 -2.92 CISPEP 4 PHE B 170 PRO B 171 0 7.15 SITE 1 AC1 7 GLY A 126 GLY A 127 TYR A 139 GLU A 201 SITE 2 AC1 7 SER A 202 HOH A 515 HOH A 867 SITE 1 AC2 7 PHE A 41 ALA A 68 ALA A 71 PHE A 72 SITE 2 AC2 7 HOH A 692 HOH A 721 HOH A 778 SITE 1 AC3 4 PHE B 76 TYR B 139 ALA B 339 HOH B 674 SITE 1 AC4 5 PHE B 41 ALA B 68 PHE B 72 HOH B 593 SITE 2 AC4 5 HOH B 750 SITE 1 AC5 3 ARG A 58 HOH A 816 ARG B 58 CRYST1 58.710 77.190 162.510 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017033 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006153 0.00000