HEADER HYDROLASE 28-MAY-20 6Z69 TITLE A NOVEL METAGENOMIC ALPHA/BETA-FOLD ESTERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYL ESTERASE/LIPASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDONOCARDIA THERMOPHILA; SOURCE 3 ORGANISM_TAXID: 1848; SOURCE 4 GENE: SAMN05443637_118146; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA/BETA-FOLD HYDROLASE; ESTERASE; METAGENOME; INHIBITOR-BOUND; KEYWDS 2 SUBSTRATE PROMISCUITY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BOLLINGER,S.THIES,A.HOEPPNER,S.KOBUS,K.-E.JAEGER,S.H.J.SMITS REVDAT 4 13-NOV-24 6Z69 1 REMARK REVDAT 3 24-JAN-24 6Z69 1 REMARK REVDAT 2 16-JUN-21 6Z69 1 JRNL REVDAT 1 30-DEC-20 6Z69 0 JRNL AUTH A.HOPPNER,A.BOLLINGER,S.KOBUS,S.THIES,C.COSCOLIN,M.FERRER, JRNL AUTH 2 K.E.JAEGER,S.H.J.SMITS JRNL TITL CRYSTAL STRUCTURES OF A NOVEL FAMILY IV ESTERASE IN FREE AND JRNL TITL 2 SUBSTRATE-BOUND FORM. JRNL REF FEBS J. V. 288 3570 2021 JRNL REFN ISSN 1742-464X JRNL PMID 33342083 JRNL DOI 10.1111/FEBS.15680 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 59945 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3152 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4430 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 200 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5436 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 962 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.31000 REMARK 3 B22 (A**2) : 0.55000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.787 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5659 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5250 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7713 ; 1.648 ; 1.663 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12098 ; 1.442 ; 1.586 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 727 ; 6.094 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 313 ;27.424 ;19.968 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 819 ;13.541 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 60 ;18.474 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 709 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6513 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1249 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6Z69 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108905. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63348 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 43.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6Z68 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 0.1 M TRIS REMARK 280 PH 8.5, 30 % (W/V) PEG 4000, 2 MM METHYL 4-METHYLUMBELLIFERYL REMARK 280 HEXYLPHOSPHAT, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.20500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.05500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.05500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.20500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 SER A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 THR A 8 REMARK 465 GLU A 9 REMARK 465 THR A 10 REMARK 465 GLY A 11 REMARK 465 LEU A 369 REMARK 465 GLU A 370 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 THR B 4 REMARK 465 LEU B 369 REMARK 465 GLU B 370 REMARK 465 HIS B 371 REMARK 465 HIS B 372 REMARK 465 HIS B 373 REMARK 465 HIS B 374 REMARK 465 HIS B 375 REMARK 465 HIS B 376 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 801 O HOH A 815 2.02 REMARK 500 O HOH A 806 O HOH A 821 2.02 REMARK 500 O HOH B 861 O HOH B 933 2.07 REMARK 500 O HOH B 869 O HOH B 902 2.08 REMARK 500 O HOH A 521 O HOH A 658 2.09 REMARK 500 O HOH B 862 O HOH B 960 2.10 REMARK 500 NH1 ARG A 214 O HOH A 501 2.11 REMARK 500 O HOH B 881 O HOH B 886 2.13 REMARK 500 O HOH B 889 O HOH B 923 2.15 REMARK 500 O HOH B 831 O HOH B 933 2.16 REMARK 500 O HOH B 536 O HOH B 805 2.16 REMARK 500 O HOH A 597 O HOH B 960 2.16 REMARK 500 O HOH B 614 O HOH B 904 2.17 REMARK 500 O HOH A 928 O HOH A 939 2.18 REMARK 500 O HOH A 514 O HOH A 624 2.19 REMARK 500 NH1 ARG B 319 O HOH B 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 517 O HOH B 837 2454 1.94 REMARK 500 O HOH A 849 O HOH B 946 3554 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 329 CG - CD - NE ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG A 329 NE - CZ - NH2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASN B 6 CB - CA - C ANGL. DEV. = -15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 31 108.75 -56.76 REMARK 500 MET A 129 10.46 59.96 REMARK 500 LEU A 132 148.42 87.29 REMARK 500 SER A 194 -96.38 -86.47 REMARK 500 SER A 202 -118.73 60.82 REMARK 500 VAL A 231 54.86 38.47 REMARK 500 PHE A 259 -51.62 71.73 REMARK 500 ALA A 339 18.02 59.61 REMARK 500 PHE A 344 50.16 -99.71 REMARK 500 ASN B 6 -17.36 159.63 REMARK 500 LEU B 132 149.55 84.67 REMARK 500 SER B 194 -96.33 -93.24 REMARK 500 SER B 202 -119.50 59.52 REMARK 500 VAL B 231 55.71 35.97 REMARK 500 PHE B 259 -59.77 70.52 REMARK 500 THR B 276 45.05 38.56 REMARK 500 PHE B 344 49.88 -101.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 959 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 960 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 961 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH B 997 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B 998 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B 999 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH B1000 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH B1001 DISTANCE = 6.60 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 HEE A 401 REMARK 610 HEE A 402 REMARK 610 HEE B 401 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 577 O REMARK 620 2 HOH B 618 O 90.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4MU A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues HEE A 402 and 4MU A REMARK 800 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide HEE B 401 and SER B REMARK 800 202 DBREF1 6Z69 A 1 368 UNP A0A1M6Y2K1_PSETH DBREF2 6Z69 A A0A1M6Y2K1 1 368 DBREF1 6Z69 B 1 368 UNP A0A1M6Y2K1_PSETH DBREF2 6Z69 B A0A1M6Y2K1 1 368 SEQADV 6Z69 VAL A 271 UNP A0A1M6Y2K LEU 271 CONFLICT SEQADV 6Z69 LEU A 369 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z69 GLU A 370 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z69 HIS A 371 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z69 HIS A 372 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z69 HIS A 373 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z69 HIS A 374 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z69 HIS A 375 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z69 HIS A 376 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z69 VAL B 271 UNP A0A1M6Y2K LEU 271 CONFLICT SEQADV 6Z69 LEU B 369 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z69 GLU B 370 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z69 HIS B 371 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z69 HIS B 372 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z69 HIS B 373 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z69 HIS B 374 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z69 HIS B 375 UNP A0A1M6Y2K EXPRESSION TAG SEQADV 6Z69 HIS B 376 UNP A0A1M6Y2K EXPRESSION TAG SEQRES 1 A 376 MET THR THR THR SER ASN SER THR GLU THR GLY ARG ARG SEQRES 2 A 376 PRO GLY ARG LEU GLY ASP PRO ASP ARG CYS LEU ARG THR SEQRES 3 A 376 ASP PRO ARG THR ASP PRO ARG THR VAL GLU ALA LEU ALA SEQRES 4 A 376 PRO PHE GLY LEU ASP VAL ASN ALA ALA PRO ALA PRO ILE SEQRES 5 A 376 GLY PRO ASP ALA PRO ARG GLU GLN GLN LEU GLU TYR ALA SEQRES 6 A 376 MET GLY ALA GLU ALA ALA PHE GLU GLY VAL PHE ALA ALA SEQRES 7 A 376 LEU MET ASP GLY LEU ASP PRO VAL PRO GLY ILE GLU ARG SEQRES 8 A 376 ARG THR GLU THR ILE SER GLY PRO ALA GLY ASN GLU ILE SEQRES 9 A 376 LYS LEU TYR VAL HIS ARG PRO ALA GLY ALA VAL GLY PRO SEQRES 10 A 376 LEU PRO GLY ILE PHE HIS ILE HIS GLY GLY GLY MET VAL SEQRES 11 A 376 ILE LEU GLN ALA ALA GLY PRO VAL TYR VAL ARG PHE ARG SEQRES 12 A 376 ASP GLU LEU ALA ALA THR GLY THR VAL VAL VAL GLY VAL SEQRES 13 A 376 GLU TYR ARG ASN GLY ALA GLY VAL LEU GLY PRO HIS PRO SEQRES 14 A 376 PHE PRO ALA GLY LEU HIS ASP CYS ALA VAL ALA LEU ASP SEQRES 15 A 376 TRP VAL HIS ALA ARG ARG ALA GLU LEU GLY ILE SER THR SEQRES 16 A 376 LEU THR VAL ALA GLY GLU SER GLY GLY GLY ASN LEU THR SEQRES 17 A 376 LEU ALA THR ALA ILE ARG ALA LYS ARG GLU GLY ARG LEU SEQRES 18 A 376 ASP ALA ILE ASP GLY VAL TYR ALA LEU VAL PRO TYR ILE SEQRES 19 A 376 SER GLY MET TYR GLY ARG SER ARG GLU GLU ARG GLU ALA SEQRES 20 A 376 GLU LEU PRO SER LEU VAL GLU CYS ASP GLY TYR PHE ILE SEQRES 21 A 376 SER CYS ASP LEU CYS ALA VAL PHE VAL GLU VAL TYR ASP SEQRES 22 A 376 PRO GLY THR ALA HIS LEU THR ASP PRO LEU ALA TRP PRO SEQRES 23 A 376 TYR HIS ALA ALA ARG GLU ASP LEU VAL GLY LEU PRO PRO SEQRES 24 A 376 HIS VAL ILE SER VAL ASN GLU VAL ASP PRO LEU ARG ASP SEQRES 25 A 376 GLU GLY LEU ALA TYR TYR ARG LYS LEU VAL GLU ALA GLY SEQRES 26 A 376 VAL GLU ALA ARG SER ARG VAL VAL PRO GLY ALA CYS HIS SEQRES 27 A 376 ALA ALA ASP MET MET PHE ARG LYS ALA ALA PRO ASP MET SEQRES 28 A 376 TYR GLU ALA THR VAL GLN ASP ILE HIS ASP PHE VAL THR SEQRES 29 A 376 SER LEU HIS ARG LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 376 MET THR THR THR SER ASN SER THR GLU THR GLY ARG ARG SEQRES 2 B 376 PRO GLY ARG LEU GLY ASP PRO ASP ARG CYS LEU ARG THR SEQRES 3 B 376 ASP PRO ARG THR ASP PRO ARG THR VAL GLU ALA LEU ALA SEQRES 4 B 376 PRO PHE GLY LEU ASP VAL ASN ALA ALA PRO ALA PRO ILE SEQRES 5 B 376 GLY PRO ASP ALA PRO ARG GLU GLN GLN LEU GLU TYR ALA SEQRES 6 B 376 MET GLY ALA GLU ALA ALA PHE GLU GLY VAL PHE ALA ALA SEQRES 7 B 376 LEU MET ASP GLY LEU ASP PRO VAL PRO GLY ILE GLU ARG SEQRES 8 B 376 ARG THR GLU THR ILE SER GLY PRO ALA GLY ASN GLU ILE SEQRES 9 B 376 LYS LEU TYR VAL HIS ARG PRO ALA GLY ALA VAL GLY PRO SEQRES 10 B 376 LEU PRO GLY ILE PHE HIS ILE HIS GLY GLY GLY MET VAL SEQRES 11 B 376 ILE LEU GLN ALA ALA GLY PRO VAL TYR VAL ARG PHE ARG SEQRES 12 B 376 ASP GLU LEU ALA ALA THR GLY THR VAL VAL VAL GLY VAL SEQRES 13 B 376 GLU TYR ARG ASN GLY ALA GLY VAL LEU GLY PRO HIS PRO SEQRES 14 B 376 PHE PRO ALA GLY LEU HIS ASP CYS ALA VAL ALA LEU ASP SEQRES 15 B 376 TRP VAL HIS ALA ARG ARG ALA GLU LEU GLY ILE SER THR SEQRES 16 B 376 LEU THR VAL ALA GLY GLU SER GLY GLY GLY ASN LEU THR SEQRES 17 B 376 LEU ALA THR ALA ILE ARG ALA LYS ARG GLU GLY ARG LEU SEQRES 18 B 376 ASP ALA ILE ASP GLY VAL TYR ALA LEU VAL PRO TYR ILE SEQRES 19 B 376 SER GLY MET TYR GLY ARG SER ARG GLU GLU ARG GLU ALA SEQRES 20 B 376 GLU LEU PRO SER LEU VAL GLU CYS ASP GLY TYR PHE ILE SEQRES 21 B 376 SER CYS ASP LEU CYS ALA VAL PHE VAL GLU VAL TYR ASP SEQRES 22 B 376 PRO GLY THR ALA HIS LEU THR ASP PRO LEU ALA TRP PRO SEQRES 23 B 376 TYR HIS ALA ALA ARG GLU ASP LEU VAL GLY LEU PRO PRO SEQRES 24 B 376 HIS VAL ILE SER VAL ASN GLU VAL ASP PRO LEU ARG ASP SEQRES 25 B 376 GLU GLY LEU ALA TYR TYR ARG LYS LEU VAL GLU ALA GLY SEQRES 26 B 376 VAL GLU ALA ARG SER ARG VAL VAL PRO GLY ALA CYS HIS SEQRES 27 B 376 ALA ALA ASP MET MET PHE ARG LYS ALA ALA PRO ASP MET SEQRES 28 B 376 TYR GLU ALA THR VAL GLN ASP ILE HIS ASP PHE VAL THR SEQRES 29 B 376 SER LEU HIS ARG LEU GLU HIS HIS HIS HIS HIS HIS HET HEE A 401 10 HET HEE A 402 10 HET 4MU A 403 13 HET 4MU A 404 13 HET HEE B 401 11 HET MG B 402 1 HETNAM HEE N-HEXYLPHOSPHONATE ETHYL ESTER HETNAM 4MU 7-HYDROXY-4-METHYL-2H-CHROMEN-2-ONE HETNAM MG MAGNESIUM ION HETSYN 4MU 4-METHYLUMBELLIFERONE FORMUL 3 HEE 3(C8 H19 O3 P) FORMUL 5 4MU 2(C10 H8 O3) FORMUL 8 MG MG 2+ FORMUL 9 HOH *962(H2 O) HELIX 1 AA1 PRO A 14 ASP A 19 1 6 HELIX 2 AA2 ASP A 31 ALA A 39 1 9 HELIX 3 AA3 PRO A 40 GLY A 42 5 3 HELIX 4 AA4 PRO A 57 ASP A 81 1 25 HELIX 5 AA5 GLY A 136 THR A 149 1 14 HELIX 6 AA6 ALA A 162 GLY A 166 5 5 HELIX 7 AA7 PRO A 171 ARG A 187 1 17 HELIX 8 AA8 ARG A 187 GLY A 192 1 6 HELIX 9 AA9 SER A 202 GLU A 218 1 17 HELIX 10 AB1 ARG A 220 ILE A 224 5 5 HELIX 11 AB2 SER A 241 LEU A 249 1 9 HELIX 12 AB3 PRO A 250 CYS A 255 1 6 HELIX 13 AB4 SER A 261 ASP A 273 1 13 HELIX 14 AB5 TRP A 285 ALA A 289 5 5 HELIX 15 AB6 ALA A 290 VAL A 295 1 6 HELIX 16 AB7 LEU A 310 ALA A 324 1 15 HELIX 17 AB8 ALA A 339 PHE A 344 1 6 HELIX 18 AB9 ALA A 348 LEU A 366 1 19 HELIX 19 AC1 PRO B 14 ASP B 19 1 6 HELIX 20 AC2 ASP B 31 ALA B 39 1 9 HELIX 21 AC3 PRO B 40 GLY B 42 5 3 HELIX 22 AC4 PRO B 57 ASP B 81 1 25 HELIX 23 AC5 GLY B 136 THR B 149 1 14 HELIX 24 AC6 ALA B 162 GLY B 166 5 5 HELIX 25 AC7 PRO B 171 ARG B 187 1 17 HELIX 26 AC8 ARG B 187 GLY B 192 1 6 HELIX 27 AC9 SER B 202 GLU B 218 1 17 HELIX 28 AD1 ARG B 220 ILE B 224 5 5 HELIX 29 AD2 SER B 241 LEU B 249 1 9 HELIX 30 AD3 PRO B 250 CYS B 255 1 6 HELIX 31 AD4 SER B 261 ASP B 273 1 13 HELIX 32 AD5 TRP B 285 ALA B 289 5 5 HELIX 33 AD6 ALA B 290 VAL B 295 1 6 HELIX 34 AD7 LEU B 310 ALA B 324 1 15 HELIX 35 AD8 ALA B 339 PHE B 344 1 6 HELIX 36 AD9 ALA B 348 LEU B 366 1 19 SHEET 1 AA116 ILE A 89 SER A 97 0 SHEET 2 AA116 GLU A 103 PRO A 111 -1 O ILE A 104 N ILE A 96 SHEET 3 AA116 VAL A 152 GLU A 157 -1 O GLY A 155 N TYR A 107 SHEET 4 AA116 LEU A 118 ILE A 124 1 N ILE A 121 O VAL A 154 SHEET 5 AA116 ILE A 193 GLU A 201 1 O THR A 197 N PHE A 122 SHEET 6 AA116 GLY A 226 LEU A 230 1 O LEU A 230 N GLY A 200 SHEET 7 AA116 HIS A 300 ASN A 305 1 O VAL A 301 N ALA A 229 SHEET 8 AA116 ALA A 328 VAL A 333 1 O ARG A 331 N VAL A 304 SHEET 9 AA116 ALA B 328 VAL B 333 -1 O SER B 330 N SER A 330 SHEET 10 AA116 HIS B 300 ASN B 305 1 N VAL B 304 O VAL B 333 SHEET 11 AA116 GLY B 226 LEU B 230 1 N ALA B 229 O VAL B 301 SHEET 12 AA116 ILE B 193 GLU B 201 1 N VAL B 198 O TYR B 228 SHEET 13 AA116 LEU B 118 ILE B 124 1 N PHE B 122 O THR B 197 SHEET 14 AA116 VAL B 152 GLU B 157 1 O VAL B 154 N ILE B 121 SHEET 15 AA116 GLU B 103 PRO B 111 -1 N TYR B 107 O GLY B 155 SHEET 16 AA116 ILE B 89 SER B 97 -1 N ARG B 92 O VAL B 108 LINK OG SER A 202 P HEE A 401 1555 1555 1.51 LINK P HEE A 402 O1' 4MU A 404 1555 1555 1.48 LINK CB SER B 202 O3P HEE B 401 1555 1555 1.36 LINK MG MG B 402 O HOH B 577 1555 1555 2.98 LINK MG MG B 402 O HOH B 618 1555 1555 2.96 CISPEP 1 GLY A 166 PRO A 167 0 -7.37 CISPEP 2 PHE A 170 PRO A 171 0 1.14 CISPEP 3 GLY B 166 PRO B 167 0 -2.09 CISPEP 4 PHE B 170 PRO B 171 0 2.80 SITE 1 AC1 10 GLY A 127 GLY A 128 TYR A 139 GLU A 201 SITE 2 AC1 10 SER A 202 GLY A 203 TYR A 233 HIS A 338 SITE 3 AC1 10 ALA A 339 4MU A 403 SITE 1 AC2 10 PHE A 72 GLY A 127 GLY A 128 PHE A 259 SITE 2 AC2 10 ILE A 260 SER A 261 LEU A 264 PHE A 268 SITE 3 AC2 10 HEE A 401 HOH A 504 SITE 1 AC3 6 PHE B 76 GLY B 136 PRO B 137 VAL B 138 SITE 2 AC3 6 HOH B 577 HOH B 618 SITE 1 AC4 13 PHE A 41 TYR A 64 GLY A 67 ALA A 68 SITE 2 AC4 13 ALA A 71 PHE A 72 VAL A 75 HOH A 527 SITE 3 AC4 13 HOH A 680 TYR B 64 GLY B 67 ALA B 68 SITE 4 AC4 13 ALA B 71 SITE 1 AC5 11 GLY B 127 GLY B 128 GLU B 201 GLY B 203 SITE 2 AC5 11 GLY B 204 GLY B 205 ASN B 206 LEU B 230 SITE 3 AC5 11 VAL B 231 TYR B 233 HIS B 338 CRYST1 72.410 86.700 110.110 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013810 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011534 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009082 0.00000