HEADER VIRAL PROTEIN 28-MAY-20 6Z6E TITLE CRYSTAL STRUCTURE OF THE HK97 BACTERIOPHAGE SMALL TERMINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TERMINASE SMALL SUBUNIT; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE HK97; SOURCE 3 ORGANISM_TAXID: 37554; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GENOME PACKAGING, BACTERIOPHAGE, DNA BINDING, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.K.H.FUNG,M.CHECHIK,C.G.BAUMANN,A.A.ANTSON REVDAT 2 21-DEC-22 6Z6E 1 JRNL REVDAT 1 09-JUN-21 6Z6E 0 JRNL AUTH H.K.H.FUNG,S.GRIMES,A.HUET,R.L.DUDA,M.CHECHIK,J.GAULT, JRNL AUTH 2 C.V.ROBINSON,R.W.HENDRIX,P.J.JARDINE,J.F.CONWAY,C.G.BAUMANN, JRNL AUTH 3 A.A.ANTSON JRNL TITL STRUCTURAL BASIS OF DNA PACKAGING BY A RING-TYPE ATPASE FROM JRNL TITL 2 AN ARCHETYPAL VIRAL SYSTEM. JRNL REF NUCLEIC ACIDS RES. V. 50 8719 2022 JRNL REFN ESSN 1362-4962 JRNL PMID 35947691 JRNL DOI 10.1093/NAR/GKAC647 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 82402 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4469 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5644 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 327 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2465 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 338 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.60000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : 1.95000 REMARK 3 B12 (A**2) : -0.30000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.045 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.045 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.981 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2516 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2400 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3408 ; 1.443 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5546 ; 0.985 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 310 ; 4.767 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;30.303 ;23.543 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 466 ;10.811 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;14.635 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 389 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2779 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 498 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): 7 ;19.950 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2 ;19.469 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 23 123 B 23 123 6580 0.040 0.050 REMARK 3 2 A 24 123 C 24 123 6518 0.040 0.050 REMARK 3 3 B 24 123 C 24 123 6604 0.040 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6Z6E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1292108974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS OCT 15, 2015 REMARK 200 DATA SCALING SOFTWARE : XDS OCT 15, 2015 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86871 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 44.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.70700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD 2013/2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9% (W/V) PEG 3350, 0.1 M SUCCINIC REMARK 280 ACID, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 61.64050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.58816 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.33033 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 61.64050 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 35.58816 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.33033 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 61.64050 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 35.58816 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.33033 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 71.17632 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 52.66067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 71.17632 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 52.66067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 71.17632 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 52.66067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: NONAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 LYS A 4 REMARK 465 ARG A 5 REMARK 465 ILE A 6 REMARK 465 ARG A 7 REMARK 465 SER A 8 REMARK 465 ASP A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 VAL A 15 REMARK 465 GLN A 16 REMARK 465 ALA A 17 REMARK 465 MET A 18 REMARK 465 LYS A 19 REMARK 465 ASN A 20 REMARK 465 GLY A 125 REMARK 465 GLU A 126 REMARK 465 SER A 127 REMARK 465 ARG A 128 REMARK 465 ASP A 129 REMARK 465 GLN A 130 REMARK 465 LYS A 131 REMARK 465 LYS A 132 REMARK 465 ARG A 133 REMARK 465 ASN A 134 REMARK 465 GLN A 135 REMARK 465 ASN A 136 REMARK 465 ASP A 137 REMARK 465 ARG A 138 REMARK 465 ASP A 139 REMARK 465 ALA A 140 REMARK 465 ARG A 141 REMARK 465 ASN A 142 REMARK 465 THR A 143 REMARK 465 LYS A 144 REMARK 465 ASN A 145 REMARK 465 GLU A 146 REMARK 465 HIS A 147 REMARK 465 GLN A 148 REMARK 465 ASP A 149 REMARK 465 GLN A 150 REMARK 465 ASP A 151 REMARK 465 ASP A 152 REMARK 465 ASN A 153 REMARK 465 LEU A 154 REMARK 465 ILE A 155 REMARK 465 ALA A 156 REMARK 465 PHE A 157 REMARK 465 PRO A 158 REMARK 465 LYS A 159 REMARK 465 HIS A 160 REMARK 465 GLY A 161 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 LYS B 4 REMARK 465 ARG B 5 REMARK 465 ILE B 6 REMARK 465 ARG B 7 REMARK 465 SER B 8 REMARK 465 ASP B 9 REMARK 465 SER B 10 REMARK 465 SER B 11 REMARK 465 ALA B 12 REMARK 465 ALA B 13 REMARK 465 ALA B 14 REMARK 465 VAL B 15 REMARK 465 GLN B 16 REMARK 465 ALA B 17 REMARK 465 MET B 18 REMARK 465 LYS B 19 REMARK 465 ASN B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 22 REMARK 465 GLY B 125 REMARK 465 GLU B 126 REMARK 465 SER B 127 REMARK 465 ARG B 128 REMARK 465 ASP B 129 REMARK 465 GLN B 130 REMARK 465 LYS B 131 REMARK 465 LYS B 132 REMARK 465 ARG B 133 REMARK 465 ASN B 134 REMARK 465 GLN B 135 REMARK 465 ASN B 136 REMARK 465 ASP B 137 REMARK 465 ARG B 138 REMARK 465 ASP B 139 REMARK 465 ALA B 140 REMARK 465 ARG B 141 REMARK 465 ASN B 142 REMARK 465 THR B 143 REMARK 465 LYS B 144 REMARK 465 ASN B 145 REMARK 465 GLU B 146 REMARK 465 HIS B 147 REMARK 465 GLN B 148 REMARK 465 ASP B 149 REMARK 465 GLN B 150 REMARK 465 ASP B 151 REMARK 465 ASP B 152 REMARK 465 ASN B 153 REMARK 465 LEU B 154 REMARK 465 ILE B 155 REMARK 465 ALA B 156 REMARK 465 PHE B 157 REMARK 465 PRO B 158 REMARK 465 LYS B 159 REMARK 465 HIS B 160 REMARK 465 GLY B 161 REMARK 465 ALA C 2 REMARK 465 ASP C 3 REMARK 465 LYS C 4 REMARK 465 ARG C 5 REMARK 465 ILE C 6 REMARK 465 ARG C 7 REMARK 465 SER C 8 REMARK 465 ASP C 9 REMARK 465 SER C 10 REMARK 465 SER C 11 REMARK 465 ALA C 12 REMARK 465 ALA C 13 REMARK 465 ALA C 14 REMARK 465 VAL C 15 REMARK 465 GLN C 16 REMARK 465 ALA C 17 REMARK 465 MET C 18 REMARK 465 LYS C 19 REMARK 465 ASN C 20 REMARK 465 ALA C 21 REMARK 465 ALA C 22 REMARK 465 VAL C 23 REMARK 465 GLY C 125 REMARK 465 GLU C 126 REMARK 465 SER C 127 REMARK 465 ARG C 128 REMARK 465 ASP C 129 REMARK 465 GLN C 130 REMARK 465 LYS C 131 REMARK 465 LYS C 132 REMARK 465 ARG C 133 REMARK 465 ASN C 134 REMARK 465 GLN C 135 REMARK 465 ASN C 136 REMARK 465 ASP C 137 REMARK 465 ARG C 138 REMARK 465 ASP C 139 REMARK 465 ALA C 140 REMARK 465 ARG C 141 REMARK 465 ASN C 142 REMARK 465 THR C 143 REMARK 465 LYS C 144 REMARK 465 ASN C 145 REMARK 465 GLU C 146 REMARK 465 HIS C 147 REMARK 465 GLN C 148 REMARK 465 ASP C 149 REMARK 465 GLN C 150 REMARK 465 ASP C 151 REMARK 465 ASP C 152 REMARK 465 ASN C 153 REMARK 465 LEU C 154 REMARK 465 ILE C 155 REMARK 465 ALA C 156 REMARK 465 PHE C 157 REMARK 465 PRO C 158 REMARK 465 LYS C 159 REMARK 465 HIS C 160 REMARK 465 GLY C 161 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 84 CD NE CZ NH1 NH2 REMARK 470 GLU A 88 CG CD OE1 OE2 REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 LYS A 100 CE NZ REMARK 470 VAL B 23 CG1 CG2 REMARK 470 LYS B 36 CE NZ REMARK 470 GLU B 88 CG CD OE1 OE2 REMARK 470 GLU B 89 OE1 OE2 REMARK 470 ASP C 24 CG OD1 OD2 REMARK 470 LYS C 36 CD CE NZ REMARK 470 LYS C 77 CE NZ REMARK 470 GLU C 88 CG CD OE1 OE2 REMARK 470 ASN C 124 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 76 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 84 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 76 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 412 DISTANCE = 6.37 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD C 201 DBREF 6Z6E A 2 161 UNP Q9MBW4 Q9MBW4_BPHK7 2 161 DBREF 6Z6E B 2 161 UNP Q9MBW4 Q9MBW4_BPHK7 2 161 DBREF 6Z6E C 2 161 UNP Q9MBW4 Q9MBW4_BPHK7 2 161 SEQRES 1 A 160 ALA ASP LYS ARG ILE ARG SER ASP SER SER ALA ALA ALA SEQRES 2 A 160 VAL GLN ALA MET LYS ASN ALA ALA VAL ASP THR ILE ASP SEQRES 3 A 160 PRO PRO SER HIS ALA GLY LEU GLU LYS LYS ALA GLU PRO SEQRES 4 A 160 PHE TRP HIS ASP ASN ILE ARG SER LYS ALA LEU ASP SER SEQRES 5 A 160 TRP THR PRO ALA ASP LEU LEU ALA ALA VAL GLU LEU ALA SEQRES 6 A 160 ASN ASN GLN LEU TYR ILE THR VAL LEU ARG LYS ASP LEU SEQRES 7 A 160 ARG LYS GLU GLU ARG ILE ARG GLY GLU GLU ARG ASP GLU SEQRES 8 A 160 GLY LEU ILE LYS ASP LEU ARG LYS GLN ILE VAL GLU LEU SEQRES 9 A 160 GLN ARG THR ILE LEU ALA GLN ARG ARG ASP LEU GLN ILE SEQRES 10 A 160 HIS SER HIS ALA THR ASN GLY GLU SER ARG ASP GLN LYS SEQRES 11 A 160 LYS ARG ASN GLN ASN ASP ARG ASP ALA ARG ASN THR LYS SEQRES 12 A 160 ASN GLU HIS GLN ASP GLN ASP ASP ASN LEU ILE ALA PHE SEQRES 13 A 160 PRO LYS HIS GLY SEQRES 1 B 160 ALA ASP LYS ARG ILE ARG SER ASP SER SER ALA ALA ALA SEQRES 2 B 160 VAL GLN ALA MET LYS ASN ALA ALA VAL ASP THR ILE ASP SEQRES 3 B 160 PRO PRO SER HIS ALA GLY LEU GLU LYS LYS ALA GLU PRO SEQRES 4 B 160 PHE TRP HIS ASP ASN ILE ARG SER LYS ALA LEU ASP SER SEQRES 5 B 160 TRP THR PRO ALA ASP LEU LEU ALA ALA VAL GLU LEU ALA SEQRES 6 B 160 ASN ASN GLN LEU TYR ILE THR VAL LEU ARG LYS ASP LEU SEQRES 7 B 160 ARG LYS GLU GLU ARG ILE ARG GLY GLU GLU ARG ASP GLU SEQRES 8 B 160 GLY LEU ILE LYS ASP LEU ARG LYS GLN ILE VAL GLU LEU SEQRES 9 B 160 GLN ARG THR ILE LEU ALA GLN ARG ARG ASP LEU GLN ILE SEQRES 10 B 160 HIS SER HIS ALA THR ASN GLY GLU SER ARG ASP GLN LYS SEQRES 11 B 160 LYS ARG ASN GLN ASN ASP ARG ASP ALA ARG ASN THR LYS SEQRES 12 B 160 ASN GLU HIS GLN ASP GLN ASP ASP ASN LEU ILE ALA PHE SEQRES 13 B 160 PRO LYS HIS GLY SEQRES 1 C 160 ALA ASP LYS ARG ILE ARG SER ASP SER SER ALA ALA ALA SEQRES 2 C 160 VAL GLN ALA MET LYS ASN ALA ALA VAL ASP THR ILE ASP SEQRES 3 C 160 PRO PRO SER HIS ALA GLY LEU GLU LYS LYS ALA GLU PRO SEQRES 4 C 160 PHE TRP HIS ASP ASN ILE ARG SER LYS ALA LEU ASP SER SEQRES 5 C 160 TRP THR PRO ALA ASP LEU LEU ALA ALA VAL GLU LEU ALA SEQRES 6 C 160 ASN ASN GLN LEU TYR ILE THR VAL LEU ARG LYS ASP LEU SEQRES 7 C 160 ARG LYS GLU GLU ARG ILE ARG GLY GLU GLU ARG ASP GLU SEQRES 8 C 160 GLY LEU ILE LYS ASP LEU ARG LYS GLN ILE VAL GLU LEU SEQRES 9 C 160 GLN ARG THR ILE LEU ALA GLN ARG ARG ASP LEU GLN ILE SEQRES 10 C 160 HIS SER HIS ALA THR ASN GLY GLU SER ARG ASP GLN LYS SEQRES 11 C 160 LYS ARG ASN GLN ASN ASP ARG ASP ALA ARG ASN THR LYS SEQRES 12 C 160 ASN GLU HIS GLN ASP GLN ASP ASP ASN LEU ILE ALA PHE SEQRES 13 C 160 PRO LYS HIS GLY HET IOD A 201 1 HET IOD A 202 1 HET IOD A 203 1 HET IOD B 201 1 HET IOD B 202 1 HET IOD B 203 1 HET IOD C 201 1 HET IOD C 202 1 HET IOD C 203 1 HETNAM IOD IODIDE ION FORMUL 4 IOD 9(I 1-) FORMUL 13 HOH *338(H2 O) HELIX 1 AA1 PRO A 29 GLY A 33 5 5 HELIX 2 AA2 GLU A 35 LYS A 37 5 3 HELIX 3 AA3 ALA A 38 ARG A 47 1 10 HELIX 4 AA4 SER A 48 LYS A 49 5 2 HELIX 5 AA5 ALA A 50 TRP A 54 5 5 HELIX 6 AA6 THR A 55 ILE A 85 1 31 HELIX 7 AA7 ASP A 91 LEU A 116 1 26 HELIX 8 AA8 HIS A 119 ASN A 124 1 6 HELIX 9 AA9 PRO B 29 GLY B 33 5 5 HELIX 10 AB1 GLU B 35 LYS B 37 5 3 HELIX 11 AB2 ALA B 38 ARG B 47 1 10 HELIX 12 AB3 SER B 48 LYS B 49 5 2 HELIX 13 AB4 ALA B 50 TRP B 54 5 5 HELIX 14 AB5 THR B 55 ILE B 85 1 31 HELIX 15 AB6 ASP B 91 LEU B 116 1 26 HELIX 16 AB7 HIS B 119 ASN B 124 1 6 HELIX 17 AB8 PRO C 29 GLY C 33 5 5 HELIX 18 AB9 GLU C 35 LYS C 37 5 3 HELIX 19 AC1 ALA C 38 ARG C 47 1 10 HELIX 20 AC2 SER C 48 LYS C 49 5 2 HELIX 21 AC3 ALA C 50 TRP C 54 5 5 HELIX 22 AC4 THR C 55 ILE C 85 1 31 HELIX 23 AC5 ASP C 91 LEU C 116 1 26 HELIX 24 AC6 HIS C 119 ASN C 124 1 6 SITE 1 AC1 2 ARG A 107 HOH A 408 SITE 1 AC2 1 HOH A 401 SITE 1 AC3 2 ARG B 107 HOH B 405 SITE 1 AC4 2 ARG C 107 HOH C 413 CRYST1 123.281 123.281 78.991 90.00 90.00 120.00 H 3 27 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008112 0.004683 0.000000 0.00000 SCALE2 0.000000 0.009366 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012660 0.00000