HEADER MEMBRANE PROTEIN 02-JUN-20 6Z8A TITLE OUTER MEMBRANE FOXA IN COMPLEX WITH NOCARDAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERRIOXAMINE RECEPTOR FOXA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 GENE: FOXA, PA2466; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TONB-DEPENDENT TRANSPORTER OUTER MEMBRANE TRANSPORTER SIDEROPHORE KEYWDS 2 UPTAKE TRANSPORTER, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.JOSTS,H.TIDOW REVDAT 2 24-JAN-24 6Z8A 1 REMARK REVDAT 1 25-NOV-20 6Z8A 0 JRNL AUTH V.NORMANT,I.JOSTS,L.KUHN,Q.PERRAUD,S.FRITSCH,P.HAMMANN, JRNL AUTH 2 G.L.A.MISLIN,H.TIDOW,I.J.SCHALK JRNL TITL NOCARDAMINE-DEPENDENT IRON UPTAKE IN PSEUDOMONAS AERUGINOSA JRNL TITL 2 : EXCLUSIVE INVOLVEMENT OF THE FOXA OUTER MEMBRANE JRNL TITL 3 TRANSPORTER. JRNL REF ACS CHEM.BIOL. V. 15 2741 2020 JRNL REFN ESSN 1554-8937 JRNL PMID 32902248 JRNL DOI 10.1021/ACSCHEMBIO.0C00535 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 82.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 73.5 REMARK 3 NUMBER OF REFLECTIONS : 14274 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 709 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 388 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 27.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.3430 REMARK 3 BIN FREE R VALUE SET COUNT : 17 REMARK 3 BIN FREE R VALUE : 0.4420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5325 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : 0.09000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.552 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.347 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 41.287 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.854 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.816 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5509 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4815 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7471 ; 2.056 ; 1.653 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11183 ; 1.434 ; 1.595 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 676 ; 9.378 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 315 ;36.591 ;22.571 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 858 ;18.526 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;18.960 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 687 ; 0.156 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6288 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1221 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 1301 REMARK 3 ORIGIN FOR THE GROUP (A): -35.8652 5.2978 -11.5532 REMARK 3 T TENSOR REMARK 3 T11: 0.1532 T22: 0.0539 REMARK 3 T33: 0.0649 T12: -0.0090 REMARK 3 T13: 0.0160 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.3583 L22: 1.7902 REMARK 3 L33: 1.7514 L12: 0.3834 REMARK 3 L13: -0.8124 L23: -0.4686 REMARK 3 S TENSOR REMARK 3 S11: -0.0921 S12: 0.1638 S13: -0.2576 REMARK 3 S21: -0.0303 S22: -0.1189 S23: -0.2301 REMARK 3 S31: 0.2161 S32: 0.0647 S33: 0.2110 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6Z8A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292108890. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14984 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 82.465 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6I98 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULFATE, 0.1M HEPES, REMARK 280 0.3% OCTYL GLUCOPYRANOSIDE, PH 7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 119.10067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.55033 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 59.55033 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 119.10067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 45 REMARK 465 SER A 46 REMARK 465 ALA A 47 REMARK 465 ALA A 48 REMARK 465 GLU A 49 REMARK 465 ALA A 50 REMARK 465 ALA A 51 REMARK 465 ALA A 52 REMARK 465 GLU A 53 REMARK 465 GLN A 54 REMARK 465 ALA A 55 REMARK 465 ARG A 56 REMARK 465 PRO A 57 REMARK 465 TYR A 58 REMARK 465 ALA A 59 REMARK 465 ILE A 60 REMARK 465 PRO A 61 REMARK 465 ALA A 62 REMARK 465 GLY A 63 REMARK 465 GLN A 64 REMARK 465 LEU A 65 REMARK 465 GLY A 66 REMARK 465 ASP A 67 REMARK 465 VAL A 68 REMARK 465 LEU A 69 REMARK 465 ASN A 70 REMARK 465 ARG A 71 REMARK 465 PHE A 72 REMARK 465 ALA A 73 REMARK 465 ARG A 74 REMARK 465 GLU A 75 REMARK 465 ALA A 76 REMARK 465 GLY A 77 REMARK 465 ILE A 78 REMARK 465 THR A 79 REMARK 465 LEU A 80 REMARK 465 SER A 81 REMARK 465 ALA A 82 REMARK 465 THR A 83 REMARK 465 PRO A 84 REMARK 465 ALA A 85 REMARK 465 GLN A 86 REMARK 465 THR A 87 REMARK 465 GLY A 88 REMARK 465 GLY A 89 REMARK 465 TYR A 90 REMARK 465 SER A 91 REMARK 465 SER A 92 REMARK 465 GLN A 93 REMARK 465 GLY A 94 REMARK 465 LEU A 95 REMARK 465 ARG A 96 REMARK 465 GLY A 97 REMARK 465 SER A 98 REMARK 465 PHE A 99 REMARK 465 THR A 100 REMARK 465 VAL A 101 REMARK 465 GLN A 102 REMARK 465 GLN A 103 REMARK 465 GLY A 104 REMARK 465 LEU A 105 REMARK 465 ALA A 106 REMARK 465 ARG A 107 REMARK 465 LEU A 108 REMARK 465 LEU A 109 REMARK 465 ALA A 110 REMARK 465 ASP A 111 REMARK 465 THR A 112 REMARK 465 PRO A 113 REMARK 465 LEU A 114 REMARK 465 GLU A 115 REMARK 465 ALA A 116 REMARK 465 GLU A 117 REMARK 465 ASP A 118 REMARK 465 GLN A 119 REMARK 465 GLY A 120 REMARK 465 ASP A 121 REMARK 465 GLY A 122 REMARK 465 SER A 123 REMARK 465 PHE A 124 REMARK 465 VAL A 125 REMARK 465 LEU A 126 REMARK 465 ARG A 127 REMARK 465 GLU A 128 REMARK 465 ALA A 129 REMARK 465 PRO A 130 REMARK 465 ALA A 131 REMARK 465 LYS A 132 REMARK 465 ASP A 133 REMARK 465 GLY A 134 REMARK 465 ASP A 135 REMARK 465 VAL A 136 REMARK 465 LEU A 137 REMARK 465 ASN A 138 REMARK 465 MET A 139 REMARK 465 GLN A 140 REMARK 465 ALA A 141 REMARK 465 VAL A 142 REMARK 465 GLU A 143 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA ASN A 707 CD2 HIS A 710 1.63 REMARK 500 ND2 ASN A 609 O ALA A 620 1.96 REMARK 500 C ASN A 707 CD2 HIS A 710 2.10 REMARK 500 OE1 GLN A 415 NH2 ARG A 427 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 377 C PRO A 378 N 0.164 REMARK 500 PRO A 608 N PRO A 608 CA 0.200 REMARK 500 ALA A 620 C PRO A 621 N 0.161 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 378 C - N - CA ANGL. DEV. = 13.5 DEGREES REMARK 500 PRO A 378 C - N - CD ANGL. DEV. = -13.1 DEGREES REMARK 500 ALA A 513 CB - CA - C ANGL. DEV. = -14.3 DEGREES REMARK 500 PRO A 608 C - N - CA ANGL. DEV. = 16.1 DEGREES REMARK 500 PRO A 608 CA - N - CD ANGL. DEV. = -9.2 DEGREES REMARK 500 PRO A 608 N - CA - C ANGL. DEV. = -15.6 DEGREES REMARK 500 PRO A 621 C - N - CA ANGL. DEV. = 15.2 DEGREES REMARK 500 PRO A 621 C - N - CD ANGL. DEV. = -15.2 DEGREES REMARK 500 VAL A 667 CB - CA - C ANGL. DEV. = 12.0 DEGREES REMARK 500 VAL A 667 N - CA - C ANGL. DEV. = -32.5 DEGREES REMARK 500 GLY A 668 N - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 GLY A 773 C - N - CA ANGL. DEV. = 14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 145 -90.94 79.24 REMARK 500 SER A 162 148.62 -172.18 REMARK 500 THR A 166 -31.30 -139.24 REMARK 500 LYS A 167 17.84 53.23 REMARK 500 SER A 176 38.81 -90.11 REMARK 500 ALA A 212 49.38 -81.12 REMARK 500 ASN A 227 9.77 92.48 REMARK 500 ASN A 231 -10.41 -143.78 REMARK 500 MET A 240 44.60 80.10 REMARK 500 ARG A 272 118.00 -37.68 REMARK 500 TYR A 288 31.99 -91.12 REMARK 500 HIS A 374 4.76 -153.13 REMARK 500 THR A 382 -58.68 -139.94 REMARK 500 HIS A 390 69.51 -154.63 REMARK 500 ILE A 391 148.92 59.46 REMARK 500 SER A 440 93.31 -163.47 REMARK 500 ASP A 512 98.34 -68.50 REMARK 500 ASN A 515 76.65 54.97 REMARK 500 ASP A 521 19.56 -144.46 REMARK 500 ASP A 549 -120.09 52.86 REMARK 500 ASP A 613 36.42 -88.80 REMARK 500 ALA A 614 7.35 54.11 REMARK 500 ASN A 639 52.52 -114.44 REMARK 500 ASN A 653 32.99 70.52 REMARK 500 SER A 666 79.10 -109.46 REMARK 500 LEU A 683 -72.48 -112.43 REMARK 500 SER A 703 117.66 -163.79 REMARK 500 ALA A 715 77.61 -161.72 REMARK 500 ASN A 754 43.00 71.85 REMARK 500 THR A 762 107.78 -162.58 REMARK 500 ASP A 791 65.53 19.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 376 10.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 905 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 6L0 A 904 NBO REMARK 620 2 6L0 A 904 OAH 28.5 REMARK 620 3 6L0 A 904 OAE 51.8 78.1 REMARK 620 4 6L0 A 904 NBN 104.0 82.9 114.8 REMARK 620 5 6L0 A 904 OAG 113.3 85.0 148.6 36.0 REMARK 620 6 6L0 A 904 OAD 131.7 134.3 90.0 62.3 83.0 REMARK 620 7 6L0 A 904 NBP 116.2 116.8 119.1 125.2 92.1 107.6 REMARK 620 8 6L0 A 904 OAF 73.0 58.2 119.0 100.6 71.3 150.9 61.3 REMARK 620 9 6L0 A 904 OAI 103.2 121.2 85.3 152.5 126.1 101.2 34.9 83.9 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6L0 A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 906 DBREF 6Z8A A 45 820 UNP Q9I116 Q9I116_PSEAE 45 820 SEQRES 1 A 776 ALA SER ALA ALA GLU ALA ALA ALA GLU GLN ALA ARG PRO SEQRES 2 A 776 TYR ALA ILE PRO ALA GLY GLN LEU GLY ASP VAL LEU ASN SEQRES 3 A 776 ARG PHE ALA ARG GLU ALA GLY ILE THR LEU SER ALA THR SEQRES 4 A 776 PRO ALA GLN THR GLY GLY TYR SER SER GLN GLY LEU ARG SEQRES 5 A 776 GLY SER PHE THR VAL GLN GLN GLY LEU ALA ARG LEU LEU SEQRES 6 A 776 ALA ASP THR PRO LEU GLU ALA GLU ASP GLN GLY ASP GLY SEQRES 7 A 776 SER PHE VAL LEU ARG GLU ALA PRO ALA LYS ASP GLY ASP SEQRES 8 A 776 VAL LEU ASN MET GLN ALA VAL GLU VAL PHE ALA LEU GLY SEQRES 9 A 776 ASN ASN LEU GLY SER THR ASP GLY TYR LEU ALA THR HIS SEQRES 10 A 776 SER GLN ILE ALA THR LYS THR SER LYS PRO LEU LEU GLU SEQRES 11 A 776 THR SER GLN THR VAL SER VAL ILE THR ARG GLU GLN ILE SEQRES 12 A 776 ASP ASP THR ALA SER LYS THR VAL GLN GLN ALA MET ARG SEQRES 13 A 776 TYR THR PRO GLY ILE PHE THR GLY GLN VAL GLY ALA SER SEQRES 14 A 776 ASN ARG TYR ASP TYR VAL VAL MET ARG GLY PHE ALA ASP SEQRES 15 A 776 ASN SER VAL ASP ASN ILE TYR LEU ASP GLY LEU LYS ALA SEQRES 16 A 776 MET GLY ASP SER GLY THR PHE SER SER MET GLN VAL ASP SEQRES 17 A 776 PRO TYR PHE LEU GLU ARG ILE ASP VAL LEU LYS GLY PRO SEQRES 18 A 776 SER SER VAL LEU TYR GLY ARG SER LEU PRO GLY GLY LEU SEQRES 19 A 776 VAL ALA LEU THR SER LYS LYS PRO LEU TYR GLU ASP TYR SEQRES 20 A 776 ARG GLN ILE THR GLY SER ILE GLY ASN MET GLY GLN LYS SEQRES 21 A 776 GLU MET GLY PHE ASP PHE SER GLY PRO LEU ASP GLU GLU SEQRES 22 A 776 LYS ARG ILE ALA TYR ARG LEU ILE GLY LEU GLY LYS GLY SEQRES 23 A 776 SER ASP THR GLN PHE ASP HIS VAL LYS GLU GLU ARG TYR SEQRES 24 A 776 ALA ILE ALA PRO THR LEU ALA ILE ASP PHE SER ASP ASP SEQRES 25 A 776 THR THR LEU THR LEU GLN GLY TYR LEU GLN HIS ASP PRO SEQRES 26 A 776 ASN GLY GLY TYR HIS GLY GLY VAL PRO ALA ASP GLY THR SEQRES 27 A 776 LEU SER HIS HIS ASN GLY ARG HIS ILE SER ARG GLU PHE SEQRES 28 A 776 PHE ASP GLY GLU PRO SER LYS ASP ASP PHE ASP ARG THR SEQRES 29 A 776 GLN ARG MET PHE GLY TYR GLN LEU GLU HIS ARG ILE ASP SEQRES 30 A 776 ASP VAL TRP SER ALA ARG GLN ASN PHE ARG TYR LEU ASP SEQRES 31 A 776 SER ASP VAL ASP LEU SER GLN VAL TYR ALA TYR GLY TRP SEQRES 32 A 776 SER ALA SER GLU PRO ASN LYS LEU ASN ARG TYR PHE SER SEQRES 33 A 776 GLY ALA ARG GLU HIS LEU GLN ALA TYR ILE VAL ASP ASN SEQRES 34 A 776 MET LEU GLN ALA GLU PHE ALA THR GLY ALA ALA ARG HIS SEQRES 35 A 776 THR LEU LEU THR GLY LEU ASP TYR GLN ARG ARG ARG THR SEQRES 36 A 776 VAL VAL ASP TRP ARG SER GLY SER ALA SER ALA LEU ASP SEQRES 37 A 776 ALA PHE ASN PRO VAL TYR GLY ASP ASP ALA ILE SER TYR SEQRES 38 A 776 PHE PRO ASP ASP ASN HIS THR ARG ARG LEU GLU GLN THR SEQRES 39 A 776 GLY VAL TYR LEU GLN ASP LEU ILE ASP ILE ASP GLN TRP SEQRES 40 A 776 ARG PHE SER LEU GLY LEU ARG GLN ASP TRP VAL SER VAL SEQRES 41 A 776 THR ASP LYS ASN ARG SER THR GLY SER LYS ALA ASP ASP SEQRES 42 A 776 ASP TRP GLU LYS PHE THR GLY ARG ILE GLY ALA LEU TYR SEQRES 43 A 776 LEU PHE ASP ASN GLY LEU ALA PRO TYR VAL SER TYR SER SEQRES 44 A 776 GLU SER PHE ASN PRO ASN ALA TYR SER ASP ALA SER GLY SEQRES 45 A 776 THR PRO LEU ALA PRO THR GLU GLY LYS GLN TRP GLU LEU SEQRES 46 A 776 GLY LEU LYS PHE GLN ALA PRO GLY SER ASN SER PHE TYR SEQRES 47 A 776 THR ALA SER LEU PHE HIS ILE THR GLN GLU ASN VAL ALA SEQRES 48 A 776 SER LYS GLU PRO GLN ASP ASN PHE TYR THR SER VAL GLY SEQRES 49 A 776 GLU VAL ARG SER GLN GLY LEU GLU LEU GLU ALA HIS THR SEQRES 50 A 776 GLN LEU SER ASP ASN LEU LYS LEU LEU GLY SER TYR THR SEQRES 51 A 776 TYR THR ASP ILE THR TYR THR LYS SER LEU ASP GLY ASN SEQRES 52 A 776 GLN GLY HIS THR PRO ASN GLN ALA PRO LYS HIS MET ALA SEQRES 53 A 776 SER LEU TRP ALA ASP TYR ALA PHE ASP ALA GLY PRO LEU SEQRES 54 A 776 SER GLY LEU SER ILE GLY GLY GLY ALA ARG TYR VAL GLY SEQRES 55 A 776 GLU THR TRP ALA ASP LYS GLU ASN THR LEU ARG VAL PRO SEQRES 56 A 776 ASP TYR THR LEU VAL ASP ALA ARG ILE GLY TYR ASP LEU SEQRES 57 A 776 GLY LYS LEU GLY LEU LYS GLY LEU ASP VAL SER LEU ASN SEQRES 58 A 776 ALA ASN ASN LEU LEU ASP LYS ASP TYR VAL ALA SER CYS SEQRES 59 A 776 TYR SER LEU ASP PHE CYS TYR PHE GLY GLU LYS ARG ASN SEQRES 60 A 776 VAL THR ALA THR VAL ASN TYR GLN PHE HET SO4 A 901 5 HET SO4 A 902 5 HET DMS A 903 4 HET 6L0 A 904 42 HET FE A 905 1 HET SO4 A 906 5 HETNAM SO4 SULFATE ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM 6L0 (8E)-6,17,28-TRIHYDROXY-1,6,12,17,23,28- HETNAM 2 6L0 HEXAAZACYCLOTRITRIACONT-8-ENE-2,5,13,16,24,27-HEXONE HETNAM FE FE (III) ION FORMUL 2 SO4 3(O4 S 2-) FORMUL 4 DMS C2 H6 O S FORMUL 5 6L0 C27 H46 N6 O9 FORMUL 6 FE FE 3+ FORMUL 8 HOH *8(H2 O) HELIX 1 AA1 LEU A 173 THR A 175 5 3 HELIX 2 AA2 ARG A 184 ALA A 191 1 8 HELIX 3 AA3 THR A 194 MET A 199 1 6 HELIX 4 AA4 ARG A 200 THR A 202 5 3 HELIX 5 AA5 ASP A 252 TYR A 254 5 3 HELIX 6 AA6 SER A 266 GLY A 271 1 6 HELIX 7 AA7 GLU A 399 ASP A 403 5 5 SHEET 1 AA1 2 HIS A 161 SER A 162 0 SHEET 2 AA1 2 LYS A 170 PRO A 171 -1 O LYS A 170 N SER A 162 SHEET 1 AA2 5 VAL A 179 THR A 183 0 SHEET 2 AA2 5 LEU A 256 LYS A 263 -1 O ILE A 259 N ILE A 182 SHEET 3 AA2 5 GLY A 277 SER A 283 -1 O ALA A 280 N ASP A 260 SHEET 4 AA2 5 ILE A 232 LEU A 234 1 N TYR A 233 O LEU A 281 SHEET 5 AA2 5 LEU A 237 LYS A 238 -1 O LEU A 237 N LEU A 234 SHEET 1 AA3 2 ILE A 205 PHE A 206 0 SHEET 2 AA3 2 VAL A 220 MET A 221 -1 O VAL A 220 N PHE A 206 SHEET 1 AA424 SER A 524 TYR A 525 0 SHEET 2 AA424 ALA A 484 ASP A 512 -1 N SER A 507 O SER A 524 SHEET 3 AA424 ASP A 529 ILE A 548 -1 O GLN A 543 N LEU A 489 SHEET 4 AA424 TRP A 551 ASN A 568 -1 O GLN A 559 N VAL A 540 SHEET 5 AA424 LYS A 574 LEU A 589 -1 O GLY A 587 N SER A 554 SHEET 6 AA424 LEU A 596 ASN A 607 -1 O TYR A 602 N ILE A 586 SHEET 7 AA424 THR A 622 PHE A 633 -1 O LYS A 632 N ALA A 597 SHEET 8 AA424 PHE A 641 GLU A 652 -1 O LEU A 646 N LEU A 629 SHEET 9 AA424 GLU A 669 GLN A 682 -1 O GLU A 676 N SER A 645 SHEET 10 AA424 LYS A 688 LYS A 702 -1 O ASP A 697 N GLN A 673 SHEET 11 AA424 MET A 719 TYR A 726 -1 O MET A 719 N THR A 694 SHEET 12 AA424 LEU A 736 VAL A 745 -1 O GLY A 740 N ALA A 724 SHEET 13 AA424 THR A 762 TYR A 770 -1 O GLY A 769 N SER A 737 SHEET 14 AA424 LEU A 780 ASN A 787 -1 O ALA A 786 N ALA A 766 SHEET 15 AA424 ASN A 811 PHE A 820 -1 O THR A 813 N ASN A 785 SHEET 16 AA424 TYR A 291 GLY A 299 -1 N ILE A 298 O ALA A 814 SHEET 17 AA424 GLN A 303 PRO A 313 -1 O GLY A 307 N THR A 295 SHEET 18 AA424 ILE A 320 ASP A 332 -1 O LEU A 324 N PHE A 310 SHEET 19 AA424 LYS A 339 ASP A 352 -1 O GLU A 340 N SER A 331 SHEET 20 AA424 THR A 357 ASP A 368 -1 O LEU A 361 N LEU A 349 SHEET 21 AA424 ASP A 404 ARG A 419 -1 O GLN A 409 N GLN A 366 SHEET 22 AA424 TRP A 424 TRP A 447 -1 O ASP A 436 N THR A 408 SHEET 23 AA424 LYS A 454 THR A 481 -1 O ILE A 470 N ARG A 431 SHEET 24 AA424 ALA A 484 ASP A 512 -1 O LEU A 492 N ASN A 473 SHEET 1 AA5 2 THR A 748 TRP A 749 0 SHEET 2 AA5 2 ARG A 757 VAL A 758 -1 O VAL A 758 N THR A 748 SHEET 1 AA6 2 VAL A 795 CYS A 798 0 SHEET 2 AA6 2 CYS A 804 PHE A 806 -1 O TYR A 805 N ALA A 796 SSBOND 1 CYS A 798 CYS A 804 1555 1555 2.00 LINK NBO 6L0 A 904 FE FE A 905 1555 1555 2.76 LINK OAH 6L0 A 904 FE FE A 905 1555 1555 2.15 LINK OAE 6L0 A 904 FE FE A 905 1555 1555 2.16 LINK NBN 6L0 A 904 FE FE A 905 1555 1555 2.20 LINK OAG 6L0 A 904 FE FE A 905 1555 1555 2.15 LINK OAD 6L0 A 904 FE FE A 905 1555 1555 2.13 LINK NBP 6L0 A 904 FE FE A 905 1555 1555 2.31 LINK OAF 6L0 A 904 FE FE A 905 1555 1555 2.13 LINK OAI 6L0 A 904 FE FE A 905 1555 1555 2.15 SITE 1 AC1 5 ASN A 149 ASN A 150 LEU A 151 THR A 282 SITE 2 AC1 5 SO4 A 902 SITE 1 AC2 6 GLY A 148 ASP A 235 THR A 282 LYS A 285 SITE 2 AC2 6 GLN A 415 SO4 A 901 SITE 1 AC3 1 TYR A 525 SITE 1 AC4 11 VAL A 210 TYR A 218 THR A 245 PHE A 246 SITE 2 AC4 11 HIS A 374 GLY A 375 GLN A 441 SER A 460 SITE 3 AC4 11 TYR A 799 TYR A 805 FE A 905 SITE 1 AC5 1 6L0 A 904 SITE 1 AC6 6 LEU A 158 VAL A 179 SER A 180 VAL A 181 SITE 2 AC6 6 GLU A 678 HIS A 680 CRYST1 95.222 95.222 178.651 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010502 0.006063 0.000000 0.00000 SCALE2 0.000000 0.012126 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005598 0.00000