HEADER TRANSFERASE 03-JUN-20 6Z93 TITLE [4FE-4S]-DEPENDENT THIOURACIL DESULFIDASE TUDS (DUF523VCZ) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUDS; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM; SOURCE 3 ORGANISM_TAXID: 77133; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS THIOURACIL, IRON-SULFUR CLUSTER, DESULFURATION, SULFURTRANSFERASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.PECQUEUR,J.ZHOU,M.FONTECAVE,B.GOLINELLI-PIMPANEAU REVDAT 3 24-JAN-24 6Z93 1 REMARK REVDAT 2 30-DEC-20 6Z93 1 JRNL REVDAT 1 30-SEP-20 6Z93 0 JRNL AUTH J.ZHOU,L.PECQUEUR,A.AUCYNAITE,J.FUCHS,R.RUTKIENE, JRNL AUTH 2 J.VAITEKUNAS,R.MESKYS,M.BOLL,M.FONTECAVE,J.URBONAVICIUS, JRNL AUTH 3 B.GOLINELLI-PIMPANEAU JRNL TITL STRUCTURAL EVIDENCE FOR A [4FE-5S] INTERMEDIATE IN THE JRNL TITL 2 NON-REDOX DESULFURATION OF THIOURACIL. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 60 424 2021 JRNL REFN ESSN 1521-3773 JRNL PMID 32929873 JRNL DOI 10.1002/ANIE.202011211 REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 60.0 REMARK 3 NUMBER OF REFLECTIONS : 42447 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2117 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.63 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 5.65 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2046 REMARK 3 BIN FREE R VALUE : 0.2108 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 43 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2227 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 299 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30130 REMARK 3 B22 (A**2) : -0.14610 REMARK 3 B33 (A**2) : -0.15520 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.03610 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.200 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.090 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.089 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.086 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.086 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2376 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3219 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 819 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 407 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2376 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 293 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : 7 ; 1.000 ; HARMONIC REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 2465 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.93 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.27 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.66 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6Z93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUN-20. REMARK 100 THE DEPOSITION ID IS D_1292107986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 31, 2020 (BUILT REMARK 200 20200131) REMARK 200 DATA SCALING SOFTWARE : STARANISO 2.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42459 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 72.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 1.14700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 6Z92 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM MGCL2, 0.1 M MES, PH 5.5, 7-9% REMARK 280 PEG 6000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.19050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.90600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.19050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.90600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 438 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 483 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ALA A 155 REMARK 465 ALA A 156 REMARK 465 GLY A 157 REMARK 465 SER A 158 REMARK 465 LEU A 159 REMARK 465 GLU A 160 REMARK 465 HIS A 161 REMARK 465 HIS A 162 REMARK 465 HIS A 163 REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 MET B 1 REMARK 465 ALA B 153 REMARK 465 THR B 154 REMARK 465 ALA B 155 REMARK 465 ALA B 156 REMARK 465 GLY B 157 REMARK 465 SER B 158 REMARK 465 LEU B 159 REMARK 465 GLU B 160 REMARK 465 HIS B 161 REMARK 465 HIS B 162 REMARK 465 HIS B 163 REMARK 465 HIS B 164 REMARK 465 HIS B 165 REMARK 465 HIS B 166 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 2 CE NZ REMARK 470 LYS B 23 CD CE NZ REMARK 470 ARG B 113 CZ NH1 NH2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 10 SG REMARK 620 2 SF4 A 301 S1 117.1 REMARK 620 3 SF4 A 301 S3 107.7 106.4 REMARK 620 4 SF4 A 301 S4 117.8 102.5 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 43 SG REMARK 620 2 SF4 A 301 S1 121.2 REMARK 620 3 SF4 A 301 S2 108.7 103.7 REMARK 620 4 SF4 A 301 S4 112.4 103.1 106.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 104 SG REMARK 620 2 SF4 A 301 S1 107.0 REMARK 620 3 SF4 A 301 S2 120.5 103.5 REMARK 620 4 SF4 A 301 S3 114.9 105.6 104.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 EDO A 302 O1 REMARK 620 2 SF4 A 301 S2 87.7 REMARK 620 3 SF4 A 301 S3 91.5 103.5 REMARK 620 4 SF4 A 301 S4 156.2 106.2 103.5 REMARK 620 5 EDO A 302 O2 71.6 129.8 121.7 84.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 10 SG REMARK 620 2 SF4 B 301 S1 115.1 REMARK 620 3 SF4 B 301 S3 107.8 106.5 REMARK 620 4 SF4 B 301 S4 118.0 102.9 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 43 SG REMARK 620 2 SF4 B 301 S1 119.3 REMARK 620 3 SF4 B 301 S2 108.7 104.9 REMARK 620 4 SF4 B 301 S4 114.2 102.2 106.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 104 SG REMARK 620 2 SF4 B 301 S1 109.5 REMARK 620 3 SF4 B 301 S2 120.0 103.1 REMARK 620 4 SF4 B 301 S3 113.8 105.7 103.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 EDO B 302 O1 REMARK 620 2 SF4 B 301 S2 128.4 REMARK 620 3 SF4 B 301 S3 124.3 103.2 REMARK 620 4 SF4 B 301 S4 83.4 105.5 103.7 REMARK 620 5 EDO B 302 O2 71.5 89.7 91.6 154.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6Z92 RELATED DB: PDB DBREF1 6Z93 A 1 158 UNP A0A2H4Z949_9BACT DBREF2 6Z93 A A0A2H4Z949 1 158 DBREF1 6Z93 B 1 158 UNP A0A2H4Z949_9BACT DBREF2 6Z93 B A0A2H4Z949 1 158 SEQADV 6Z93 LEU A 159 UNP A0A2H4Z94 EXPRESSION TAG SEQADV 6Z93 GLU A 160 UNP A0A2H4Z94 EXPRESSION TAG SEQADV 6Z93 HIS A 161 UNP A0A2H4Z94 EXPRESSION TAG SEQADV 6Z93 HIS A 162 UNP A0A2H4Z94 EXPRESSION TAG SEQADV 6Z93 HIS A 163 UNP A0A2H4Z94 EXPRESSION TAG SEQADV 6Z93 HIS A 164 UNP A0A2H4Z94 EXPRESSION TAG SEQADV 6Z93 HIS A 165 UNP A0A2H4Z94 EXPRESSION TAG SEQADV 6Z93 HIS A 166 UNP A0A2H4Z94 EXPRESSION TAG SEQADV 6Z93 LEU B 159 UNP A0A2H4Z94 EXPRESSION TAG SEQADV 6Z93 GLU B 160 UNP A0A2H4Z94 EXPRESSION TAG SEQADV 6Z93 HIS B 161 UNP A0A2H4Z94 EXPRESSION TAG SEQADV 6Z93 HIS B 162 UNP A0A2H4Z94 EXPRESSION TAG SEQADV 6Z93 HIS B 163 UNP A0A2H4Z94 EXPRESSION TAG SEQADV 6Z93 HIS B 164 UNP A0A2H4Z94 EXPRESSION TAG SEQADV 6Z93 HIS B 165 UNP A0A2H4Z94 EXPRESSION TAG SEQADV 6Z93 HIS B 166 UNP A0A2H4Z94 EXPRESSION TAG SEQRES 1 A 166 MET LYS GLU LYS ILE ILE VAL SER ALA CYS LEU LEU GLY SEQRES 2 A 166 GLN PRO VAL ARG TYR ASP GLY GLN SER LYS GLY ILE VAL SEQRES 3 A 166 SER ASN TRP LEU ASP ALA LEU GLY ALA GLU GLY ARG ALA SEQRES 4 A 166 LEU ALA PHE CYS PRO GLU VAL ALA GLY GLY LEU PRO THR SEQRES 5 A 166 PRO ARG PRO PRO ALA GLU ARG GLN GLY GLU HIS VAL VAL SEQRES 6 A 166 THR GLU SER GLY LEU ASP VAL THR ALA GLU PHE ASP ARG SEQRES 7 A 166 GLY ALA GLU LEU ALA LEU GLY LEU CYS LEU ALA GLN GLY SEQRES 8 A 166 ILE ARG PHE ALA LEU LEU LYS GLU GLY SER PRO SER CYS SEQRES 9 A 166 GLY SER GLY ARG ILE TYR ASN GLY ARG PHE GLU GLY VAL SEQRES 10 A 166 SER MET ALA GLY GLU GLY LYS THR THR ALA LEU LEU ARG SEQRES 11 A 166 ARG HIS GLY ILE GLN VAL PHE SER GLU ASP GLN LEU PRO SEQRES 12 A 166 GLU LEU ALA LEU ALA LEU SER LEU VAL ALA THR ALA ALA SEQRES 13 A 166 GLY SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 166 MET LYS GLU LYS ILE ILE VAL SER ALA CYS LEU LEU GLY SEQRES 2 B 166 GLN PRO VAL ARG TYR ASP GLY GLN SER LYS GLY ILE VAL SEQRES 3 B 166 SER ASN TRP LEU ASP ALA LEU GLY ALA GLU GLY ARG ALA SEQRES 4 B 166 LEU ALA PHE CYS PRO GLU VAL ALA GLY GLY LEU PRO THR SEQRES 5 B 166 PRO ARG PRO PRO ALA GLU ARG GLN GLY GLU HIS VAL VAL SEQRES 6 B 166 THR GLU SER GLY LEU ASP VAL THR ALA GLU PHE ASP ARG SEQRES 7 B 166 GLY ALA GLU LEU ALA LEU GLY LEU CYS LEU ALA GLN GLY SEQRES 8 B 166 ILE ARG PHE ALA LEU LEU LYS GLU GLY SER PRO SER CYS SEQRES 9 B 166 GLY SER GLY ARG ILE TYR ASN GLY ARG PHE GLU GLY VAL SEQRES 10 B 166 SER MET ALA GLY GLU GLY LYS THR THR ALA LEU LEU ARG SEQRES 11 B 166 ARG HIS GLY ILE GLN VAL PHE SER GLU ASP GLN LEU PRO SEQRES 12 B 166 GLU LEU ALA LEU ALA LEU SER LEU VAL ALA THR ALA ALA SEQRES 13 B 166 GLY SER LEU GLU HIS HIS HIS HIS HIS HIS HET SF4 A 301 8 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET CL A 306 1 HET CL A 307 1 HET SF4 B 301 8 HET EDO B 302 4 HET EDO B 303 4 HET EDO B 304 4 HET EDO B 305 8 HET EDO B 306 4 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SF4 2(FE4 S4) FORMUL 4 EDO 9(C2 H6 O2) FORMUL 8 CL 2(CL 1-) FORMUL 16 HOH *299(H2 O) HELIX 1 AA1 CYS A 10 GLY A 13 5 4 HELIX 2 AA2 SER A 27 GLU A 36 1 10 HELIX 3 AA3 CYS A 43 GLY A 48 1 6 HELIX 4 AA4 VAL A 72 GLY A 91 1 20 HELIX 5 AA5 GLY A 123 HIS A 132 1 10 HELIX 6 AA6 SER A 138 ASP A 140 5 3 HELIX 7 AA7 GLN A 141 VAL A 152 1 12 HELIX 8 AA8 CYS B 10 GLY B 13 5 4 HELIX 9 AA9 SER B 27 GLU B 36 1 10 HELIX 10 AB1 CYS B 43 GLY B 48 1 6 HELIX 11 AB2 VAL B 72 GLY B 91 1 20 HELIX 12 AB3 GLY B 123 HIS B 132 1 10 HELIX 13 AB4 SER B 138 ASP B 140 5 3 HELIX 14 AB5 GLN B 141 VAL B 152 1 12 SHEET 1 AA1 4 ALA A 39 PHE A 42 0 SHEET 2 AA1 4 ILE A 5 SER A 8 1 N VAL A 7 O LEU A 40 SHEET 3 AA1 4 PHE A 94 LEU A 96 1 O LEU A 96 N ILE A 6 SHEET 4 AA1 4 GLN A 135 PHE A 137 1 O PHE A 137 N ALA A 95 SHEET 1 AA2 2 ALA A 57 GLN A 60 0 SHEET 2 AA2 2 HIS A 63 THR A 66 -1 O HIS A 63 N GLN A 60 SHEET 1 AA3 2 ARG A 108 TYR A 110 0 SHEET 2 AA3 2 SER A 118 ALA A 120 -1 O MET A 119 N ILE A 109 SHEET 1 AA4 4 ALA B 39 PHE B 42 0 SHEET 2 AA4 4 ILE B 5 SER B 8 1 N VAL B 7 O LEU B 40 SHEET 3 AA4 4 PHE B 94 LEU B 96 1 O LEU B 96 N ILE B 6 SHEET 4 AA4 4 GLN B 135 PHE B 137 1 O PHE B 137 N ALA B 95 SHEET 1 AA5 2 ALA B 57 GLN B 60 0 SHEET 2 AA5 2 HIS B 63 THR B 66 -1 O HIS B 63 N GLN B 60 SHEET 1 AA6 2 ARG B 108 TYR B 110 0 SHEET 2 AA6 2 SER B 118 ALA B 120 -1 O MET B 119 N ILE B 109 LINK SG CYS A 10 FE2 SF4 A 301 1555 1555 2.27 LINK SG CYS A 43 FE3 SF4 A 301 1555 1555 2.27 LINK SG CYS A 104 FE4 SF4 A 301 1555 1555 2.34 LINK FE1 SF4 A 301 O1 EDO A 302 1555 1555 2.48 LINK FE1 SF4 A 301 O2 EDO A 302 1555 1555 2.29 LINK SG CYS B 10 FE2 SF4 B 301 1555 1555 2.29 LINK SG CYS B 43 FE3 SF4 B 301 1555 1555 2.30 LINK SG CYS B 104 FE4 SF4 B 301 1555 1555 2.32 LINK FE1 SF4 B 301 O1 EDO B 302 1555 1555 2.45 LINK FE1 SF4 B 301 O2 EDO B 302 1555 1555 2.43 CISPEP 1 THR A 52 PRO A 53 0 5.21 CISPEP 2 THR B 52 PRO B 53 0 1.91 SITE 1 AC1 11 SER A 8 ALA A 9 CYS A 10 VAL A 16 SITE 2 AC1 11 ARG A 17 CYS A 43 GLU A 45 LYS A 98 SITE 3 AC1 11 SER A 101 CYS A 104 EDO A 302 SITE 1 AC2 6 ARG A 17 TYR A 18 GLU A 45 ARG A 54 SITE 2 AC2 6 SER A 101 SF4 A 301 SITE 1 AC3 6 GLN A 60 THR A 66 GLU A 67 GLY A 69 SITE 2 AC3 6 PHE A 114 HOH A 447 SITE 1 AC4 5 GLU A 45 ARG A 54 PRO A 55 ALA A 57 SITE 2 AC4 5 HOH A 455 SITE 1 AC5 4 ASP A 71 HOH A 424 HOH A 460 ASP B 71 SITE 1 AC6 2 ARG A 17 LYS A 23 SITE 1 AC7 12 SER B 8 ALA B 9 CYS B 10 VAL B 16 SITE 2 AC7 12 ARG B 17 CYS B 43 GLU B 45 ARG B 54 SITE 3 AC7 12 LYS B 98 SER B 101 CYS B 104 EDO B 302 SITE 1 AC8 7 ARG B 17 TYR B 18 GLU B 45 ARG B 54 SITE 2 AC8 7 SER B 101 SF4 B 301 EDO B 306 SITE 1 AC9 5 TRP B 29 ARG B 38 ALA B 146 LEU B 147 SITE 2 AC9 5 LEU B 149 SITE 1 AD1 4 ARG A 78 ALA B 35 GLU B 62 HOH B 456 SITE 1 AD2 3 ARG B 17 LYS B 98 ARG B 108 SITE 1 AD3 6 GLU B 45 ARG B 54 PRO B 55 ALA B 57 SITE 2 AD3 6 EDO B 302 HOH B 469 CRYST1 134.381 85.812 39.512 90.00 93.92 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007442 0.000000 0.000510 0.00000 SCALE2 0.000000 0.011653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025368 0.00000